niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- niwrap_afni/afni/__init__.py +601 -18
- niwrap_afni/afni/abids_json_info_py.py +35 -51
- niwrap_afni/afni/abids_json_tool_py.py +48 -59
- niwrap_afni/afni/{abids_tool.py → abids_tool_py.py} +60 -78
- niwrap_afni/afni/adjunct_apqc_tsnr_general.py +83 -84
- niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +31 -50
- niwrap_afni/afni/adjunct_calc_mont_dims_py.py +20 -43
- niwrap_afni/afni/adjunct_combine_str_py.py +29 -51
- niwrap_afni/afni/adjunct_is_label_py.py +22 -44
- niwrap_afni/afni/adjunct_make_script_and_rst_py.py +35 -55
- niwrap_afni/afni/adjunct_select_str_py.py +24 -45
- niwrap_afni/afni/{adjunct_simplify_cost.py → adjunct_simplify_cost_py.py} +49 -70
- niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +36 -55
- niwrap_afni/afni/adjunct_suma_fs_roi_info.py +28 -48
- niwrap_afni/afni/adjunct_tort_plot_dp_align.py +38 -58
- niwrap_afni/afni/adwarp.py +43 -59
- niwrap_afni/afni/afni.py +77 -77
- niwrap_afni/afni/afni_batch_r.py +28 -47
- niwrap_afni/afni/afni_check_omp.py +21 -44
- niwrap_afni/afni/afni_history.py +72 -75
- niwrap_afni/afni/afni_open.py +49 -58
- niwrap_afni/afni/afni_proc_py.py +50 -64
- niwrap_afni/afni/afni_run_r.py +22 -44
- niwrap_afni/afni/afni_system_check_py.py +43 -57
- niwrap_afni/afni/aiv.py +33 -51
- niwrap_afni/afni/{align_epi_anat.py → align_epi_anat_py.py} +84 -92
- niwrap_afni/afni/analyze_trace.py +48 -61
- niwrap_afni/afni/{ap_run_simple_rest.py → ap_run_simple_rest_tcsh.py} +72 -90
- niwrap_afni/afni/{apqc_make_html.py → apqc_make_html_py.py} +45 -68
- niwrap_afni/afni/apqc_make_tcsh_py.py +34 -53
- niwrap_afni/afni/apsearch.py +26 -48
- niwrap_afni/afni/auto_warp_py.py +98 -89
- niwrap_afni/afni/balloon.py +33 -51
- niwrap_afni/afni/bayes_view.py +29 -50
- niwrap_afni/afni/bayesian_group_ana_py.py +57 -68
- niwrap_afni/afni/brain_skin.py +64 -76
- niwrap_afni/afni/build_afni_py.py +62 -71
- niwrap_afni/afni/cat_matvec.py +26 -46
- niwrap_afni/afni/ccalc.py +23 -45
- niwrap_afni/afni/cifti_tool.py +42 -58
- niwrap_afni/afni/cjpeg.py +34 -52
- niwrap_afni/afni/clust_exp_hist_table_py.py +33 -54
- niwrap_afni/afni/clust_exp_stat_parse_py.py +57 -69
- niwrap_afni/afni/column_cat.py +32 -54
- niwrap_afni/afni/compare_surfaces.py +58 -68
- niwrap_afni/afni/{convert_cdiflist_to_grads.py → convert_cdiflist_to_grads_py.py} +60 -78
- niwrap_afni/afni/convert_dset.py +73 -77
- niwrap_afni/afni/convert_surface.py +47 -62
- niwrap_afni/afni/convex_hull.py +68 -77
- niwrap_afni/afni/count.py +56 -66
- niwrap_afni/afni/create_icosahedron.py +44 -58
- niwrap_afni/afni/dcm2niix_afni.py +102 -98
- niwrap_afni/afni/dicom_hdr.py +39 -53
- niwrap_afni/afni/dicom_hinfo.py +31 -49
- niwrap_afni/afni/dicom_to_raw.py +21 -45
- niwrap_afni/afni/dimon.py +45 -64
- niwrap_afni/afni/djpeg.py +34 -52
- niwrap_afni/afni/drive_suma.py +99 -92
- niwrap_afni/afni/dsetstat2p.py +30 -49
- niwrap_afni/afni/dtistudio_fiberto_segments.py +26 -48
- niwrap_afni/afni/{epi_b0_correct.py → epi_b0_correct_py.py} +110 -111
- niwrap_afni/afni/examine_xmat.py +45 -62
- niwrap_afni/afni/fat_mat2d_plot_py.py +88 -86
- niwrap_afni/afni/fat_mat_sel_py.py +87 -89
- niwrap_afni/afni/{fat_mat_tableize.py → fat_mat_tableize_py.py} +72 -87
- niwrap_afni/afni/fat_mvm_gridconv_py.py +24 -51
- niwrap_afni/afni/{fat_mvm_prep.py → fat_mvm_prep_py.py} +61 -79
- niwrap_afni/afni/fat_mvm_scripter_py.py +53 -65
- niwrap_afni/afni/fat_proc_align_anat_pair.py +50 -63
- niwrap_afni/afni/fat_proc_axialize_anat.py +76 -79
- niwrap_afni/afni/fat_proc_connec_vis.py +56 -70
- niwrap_afni/afni/fat_proc_convert_dcm_anat.py +44 -59
- niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +74 -79
- niwrap_afni/afni/fat_proc_decmap.py +51 -65
- niwrap_afni/afni/fat_proc_dwi_to_dt.py +94 -93
- niwrap_afni/afni/fat_proc_filter_dwis.py +47 -61
- niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +41 -62
- niwrap_afni/afni/fat_proc_map_to_dti.py +53 -65
- niwrap_afni/afni/fat_proc_select_vols.py +38 -55
- niwrap_afni/afni/{fat_roi_row.py → fat_roi_row_py.py} +58 -79
- niwrap_afni/afni/fatcat_matplot.py +22 -44
- niwrap_afni/afni/fdrval.py +34 -51
- niwrap_afni/afni/fftest.py +26 -46
- niwrap_afni/afni/file_tool.py +111 -94
- niwrap_afni/afni/fim2.py +85 -87
- niwrap_afni/afni/{find_variance_lines.py → find_variance_lines_tcsh.py} +90 -109
- niwrap_afni/afni/firdesign.py +33 -51
- niwrap_afni/afni/float_scan.py +27 -48
- niwrap_afni/afni/from3d.py +42 -60
- niwrap_afni/afni/fsread_annot.py +52 -66
- niwrap_afni/afni/gen_epi_review_py.py +47 -61
- niwrap_afni/afni/{gen_group_command.py → gen_group_command_py.py} +82 -95
- niwrap_afni/afni/{gen_ss_review_scripts.py → gen_ss_review_scripts_py.py} +100 -106
- niwrap_afni/afni/gen_ss_review_table_py.py +55 -66
- niwrap_afni/afni/get_afni_model_prf.py +26 -46
- niwrap_afni/afni/get_afni_model_prf_6.py +32 -49
- niwrap_afni/afni/get_afni_model_prf_6_bad.py +30 -48
- niwrap_afni/afni/gifti_tool.py +77 -80
- niwrap_afni/afni/gltsymtest.py +28 -49
- niwrap_afni/afni/help_format.py +20 -44
- niwrap_afni/afni/im2niml.py +24 -48
- niwrap_afni/afni/images_equal.py +24 -46
- niwrap_afni/afni/imand.py +30 -52
- niwrap_afni/afni/imaver.py +32 -54
- niwrap_afni/afni/imcalc.py +30 -51
- niwrap_afni/afni/imcat.py +89 -87
- niwrap_afni/afni/imcutup.py +35 -55
- niwrap_afni/afni/imdump.py +20 -44
- niwrap_afni/afni/immask.py +35 -53
- niwrap_afni/afni/imreg.py +70 -75
- niwrap_afni/afni/imrotate.py +33 -51
- niwrap_afni/afni/imstack.py +28 -50
- niwrap_afni/afni/imstat.py +29 -50
- niwrap_afni/afni/imupsam.py +27 -48
- niwrap_afni/afni/init_user_dotfiles_py.py +59 -66
- niwrap_afni/afni/inspec.py +37 -54
- niwrap_afni/afni/iso_surface.py +56 -67
- niwrap_afni/afni/make_color_map.py +77 -82
- niwrap_afni/afni/make_pq_script_py.py +27 -48
- niwrap_afni/afni/make_random_timing_py.py +85 -88
- niwrap_afni/afni/make_stim_times_py.py +49 -62
- niwrap_afni/afni/map_icosahedron.py +51 -62
- niwrap_afni/afni/map_track_id.py +35 -52
- niwrap_afni/afni/mba.py +62 -72
- niwrap_afni/afni/meica_py.py +38 -55
- niwrap_afni/afni/myget.py +26 -48
- niwrap_afni/afni/neuro_deconvolve_py.py +51 -66
- niwrap_afni/afni/nicat.py +27 -47
- niwrap_afni/afni/niccc.py +50 -63
- niwrap_afni/afni/nifti_tool.py +52 -65
- niwrap_afni/afni/niml_feedme.py +36 -53
- niwrap_afni/afni/nsize.py +23 -46
- niwrap_afni/afni/p2dsetstat.py +34 -51
- niwrap_afni/afni/parse_fs_lt_log_py.py +29 -48
- niwrap_afni/afni/plugout_drive.py +56 -65
- niwrap_afni/afni/plugout_ijk.py +46 -59
- niwrap_afni/afni/plugout_tt.py +48 -60
- niwrap_afni/afni/plugout_tta.py +49 -63
- niwrap_afni/afni/prompt_popup.py +35 -53
- niwrap_afni/afni/prompt_user.py +26 -47
- niwrap_afni/afni/pta.py +44 -61
- niwrap_afni/afni/qdelaunay.py +100 -91
- niwrap_afni/afni/qhull.py +63 -67
- niwrap_afni/afni/quick_alpha_vals_py.py +23 -46
- niwrap_afni/afni/quickspec.py +41 -59
- niwrap_afni/afni/quickspec_sl.py +46 -63
- niwrap_afni/afni/quotize.py +25 -47
- niwrap_afni/afni/r_pkgs_install.py +30 -50
- niwrap_afni/afni/rba.py +93 -92
- niwrap_afni/afni/rbox.py +68 -71
- niwrap_afni/afni/read_matlab_files_py.py +32 -51
- niwrap_afni/afni/{realtime_receiver.py → realtime_receiver_py.py} +76 -88
- niwrap_afni/afni/retro_ts_py.py +84 -84
- niwrap_afni/afni/rmz.py +27 -47
- niwrap_afni/afni/roi2dataset.py +47 -60
- niwrap_afni/afni/roigrow.py +38 -55
- niwrap_afni/afni/rotcom.py +27 -50
- niwrap_afni/afni/rsfgen.py +53 -65
- niwrap_afni/afni/rtfeedme.py +47 -60
- niwrap_afni/afni/samp_bias.py +42 -60
- niwrap_afni/afni/scale_to_map.py +98 -90
- niwrap_afni/afni/serial_helper.py +48 -60
- niwrap_afni/afni/sfim.py +31 -54
- niwrap_afni/afni/slow_surf_clustsim_py.py +44 -57
- niwrap_afni/afni/spharm_deco.py +47 -68
- niwrap_afni/afni/spharm_reco.py +38 -54
- niwrap_afni/afni/stimband.py +34 -53
- niwrap_afni/afni/strblast.py +38 -55
- niwrap_afni/afni/suma_change_spec.py +34 -53
- niwrap_afni/afni/suma_glxdino.py +24 -47
- niwrap_afni/afni/surf2_vol_coord.py +46 -60
- niwrap_afni/afni/surf_clust.py +113 -99
- niwrap_afni/afni/surf_dist.py +37 -54
- niwrap_afni/afni/surf_dset_info.py +59 -64
- niwrap_afni/afni/surf_extrema.py +43 -60
- niwrap_afni/afni/surf_fwhm.py +59 -70
- niwrap_afni/afni/surf_info.py +67 -72
- niwrap_afni/afni/surf_layers.py +49 -70
- niwrap_afni/afni/surf_localstat.py +33 -52
- niwrap_afni/afni/surf_measures.py +64 -71
- niwrap_afni/afni/surf_mesh.py +37 -54
- niwrap_afni/afni/surf_patch.py +68 -72
- niwrap_afni/afni/surf_qual.py +38 -57
- niwrap_afni/afni/surf_retino_map.py +32 -52
- niwrap_afni/afni/surf_smooth.py +63 -72
- niwrap_afni/afni/surf_to_surf.py +55 -67
- niwrap_afni/afni/surface_metrics.py +68 -69
- niwrap_afni/afni/tedana_wrapper_py.py +51 -63
- niwrap_afni/afni/tfim.py +39 -57
- niwrap_afni/afni/timing_tool_py.py +72 -78
- niwrap_afni/afni/to3d.py +125 -110
- niwrap_afni/afni/tokens.py +24 -46
- niwrap_afni/afni/trr.py +70 -77
- niwrap_afni/afni/uber_align_test_py.py +41 -55
- niwrap_afni/afni/uber_proc_py.py +21 -44
- niwrap_afni/afni/{uber_skel.py → uber_skel_py.py} +72 -85
- niwrap_afni/afni/uber_subject_py.py +143 -124
- niwrap_afni/afni/un_warp_epi_py.py +34 -50
- niwrap_afni/afni/uniq_images.py +26 -50
- niwrap_afni/afni/v_1d_apar2mat.py +42 -54
- niwrap_afni/afni/v_1d_astrip.py +20 -44
- niwrap_afni/afni/v_1d_bandpass.py +34 -51
- niwrap_afni/afni/v_1d_bport.py +47 -60
- niwrap_afni/afni/v_1d_correlate.py +42 -57
- niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +72 -76
- niwrap_afni/afni/v_1d_flag_motion.py +30 -52
- niwrap_afni/afni/v_1d_marry.py +25 -47
- niwrap_afni/afni/v_1d_nlfit.py +29 -49
- niwrap_afni/afni/v_1d_rplot.py +72 -78
- niwrap_afni/afni/v_1d_sem.py +60 -69
- niwrap_afni/afni/v_1d_tool_py.py +53 -65
- niwrap_afni/afni/v_1d_tsort.py +31 -49
- niwrap_afni/afni/v_1d_upsample.py +24 -46
- niwrap_afni/afni/v_1dcat.py +38 -54
- niwrap_afni/afni/v_1ddot.py +34 -51
- niwrap_afni/afni/v_1deval.py +44 -61
- niwrap_afni/afni/v_1dfft.py +40 -56
- niwrap_afni/afni/v_1dgen_arma11.py +57 -70
- niwrap_afni/afni/v_1dgrayplot.py +38 -53
- niwrap_afni/afni/v_1dmatcalc.py +25 -49
- niwrap_afni/afni/v_1dnorm.py +31 -50
- niwrap_afni/afni/v_1dplot.py +191 -155
- niwrap_afni/afni/v_1dplot_py.py +110 -103
- niwrap_afni/afni/v_1dsound.py +44 -58
- niwrap_afni/afni/v_1dsum.py +36 -53
- niwrap_afni/afni/v_1dsvd.py +45 -59
- niwrap_afni/afni/v_1dtranspose.py +24 -47
- niwrap_afni/afni/v_24swap.py +25 -46
- niwrap_afni/afni/v_2d_im_reg.py +55 -68
- niwrap_afni/afni/v_2dcat.py +86 -86
- niwrap_afni/afni/v_2perm.py +35 -54
- niwrap_afni/afni/v_2swap.py +22 -44
- niwrap_afni/afni/v_3d_aboverlap.py +32 -51
- niwrap_afni/afni/v_3d_acost.py +28 -49
- niwrap_afni/afni/v_3d_afnito3_d.py +28 -49
- niwrap_afni/afni/v_3d_afnito_analyze.py +31 -52
- niwrap_afni/afni/v_3d_afnito_nifti.py +36 -53
- niwrap_afni/afni/v_3d_afnito_niml.py +27 -47
- niwrap_afni/afni/v_3d_afnito_raw.py +25 -46
- niwrap_afni/afni/v_3d_allineate.py +63 -74
- niwrap_afni/afni/v_3d_amp_to_rsfc.py +39 -58
- niwrap_afni/afni/v_3d_anhist.py +41 -56
- niwrap_afni/afni/v_3d_anova.py +64 -75
- niwrap_afni/afni/v_3d_anova2.py +101 -100
- niwrap_afni/afni/v_3d_anova3.py +138 -126
- niwrap_afni/afni/v_3d_attribute.py +40 -55
- niwrap_afni/afni/v_3d_auto_tcorrelate.py +52 -64
- niwrap_afni/afni/v_3d_autobox.py +56 -66
- niwrap_afni/afni/v_3d_automask.py +40 -58
- niwrap_afni/afni/v_3d_ball_match.py +38 -56
- niwrap_afni/afni/v_3d_bandpass.py +66 -74
- niwrap_afni/afni/v_3d_blur_in_mask.py +45 -59
- niwrap_afni/afni/v_3d_blur_to_fwhm.py +41 -58
- niwrap_afni/afni/v_3d_brain_sync.py +40 -58
- niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +52 -63
- niwrap_afni/afni/v_3d_brick_stat.py +83 -78
- niwrap_afni/afni/v_3d_clip_level.py +32 -52
- niwrap_afni/afni/v_3d_clust_count.py +30 -51
- niwrap_afni/afni/v_3d_clust_sim.py +85 -88
- niwrap_afni/afni/v_3d_clusterize.py +81 -82
- niwrap_afni/afni/v_3d_cm.py +43 -59
- niwrap_afni/afni/v_3d_compare_affine.py +31 -53
- niwrap_afni/afni/v_3d_conformist.py +24 -46
- niwrap_afni/afni/v_3d_convolve.py +26 -48
- niwrap_afni/afni/v_3d_cruiseto_afni.py +48 -60
- niwrap_afni/afni/v_3d_deconvolve.py +68 -78
- niwrap_afni/afni/v_3d_degree_centrality.py +49 -66
- niwrap_afni/afni/v_3d_depth_map.py +53 -65
- niwrap_afni/afni/v_3d_despike.py +28 -51
- niwrap_afni/afni/v_3d_detrend.py +24 -47
- niwrap_afni/afni/v_3d_dft.py +40 -58
- niwrap_afni/afni/v_3d_diff.py +37 -54
- niwrap_afni/afni/v_3d_dteig.py +35 -55
- niwrap_afni/afni/v_3d_dtto_dwi.py +37 -54
- niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +45 -60
- niwrap_afni/afni/v_3d_dwito_dt.py +84 -86
- niwrap_afni/afni/v_3d_dwuncert.py +43 -59
- niwrap_afni/afni/v_3d_ecm.py +65 -73
- niwrap_afni/afni/v_3d_edu_01_scale.py +28 -53
- niwrap_afni/afni/v_3d_eigs_to_dt.py +38 -55
- niwrap_afni/afni/v_3d_empty.py +31 -52
- niwrap_afni/afni/v_3d_entropy.py +22 -44
- niwrap_afni/afni/v_3d_errts_cormat.py +39 -58
- niwrap_afni/afni/v_3d_exchange.py +30 -50
- niwrap_afni/afni/v_3d_extract_group_in_corr.py +28 -51
- niwrap_afni/afni/v_3d_extrema.py +67 -72
- niwrap_afni/afni/v_3d_fdr.py +54 -65
- niwrap_afni/afni/v_3d_fft.py +52 -65
- niwrap_afni/afni/v_3d_friedman.py +30 -53
- niwrap_afni/afni/v_3d_fwhmx.py +51 -63
- niwrap_afni/afni/v_3d_gen_feature_dist.py +50 -63
- niwrap_afni/afni/v_3d_gen_priors.py +87 -86
- niwrap_afni/afni/v_3d_getrow.py +34 -54
- niwrap_afni/afni/v_3d_grayplot.py +58 -69
- niwrap_afni/afni/v_3d_group_in_corr.py +87 -84
- niwrap_afni/afni/v_3d_hist.py +74 -78
- niwrap_afni/afni/v_3d_icc.py +55 -66
- niwrap_afni/afni/v_3d_intracranial.py +41 -57
- niwrap_afni/afni/v_3d_inv_fmri.py +48 -62
- niwrap_afni/afni/v_3d_isc.py +43 -59
- niwrap_afni/afni/v_3d_kruskal_wallis.py +31 -51
- niwrap_afni/afni/v_3d_lfcd.py +47 -63
- niwrap_afni/afni/v_3d_lme.py +97 -92
- niwrap_afni/afni/v_3d_lmer.py +77 -80
- niwrap_afni/afni/v_3d_local_acf.py +35 -55
- niwrap_afni/afni/v_3d_local_bistat.py +50 -63
- niwrap_afni/afni/v_3d_local_histog.py +46 -61
- niwrap_afni/afni/v_3d_local_pv.py +50 -64
- niwrap_afni/afni/v_3d_local_svd.py +38 -54
- niwrap_afni/afni/v_3d_local_unifize.py +46 -62
- niwrap_afni/afni/v_3d_localstat.py +76 -81
- niwrap_afni/afni/v_3d_lomb_scargle.py +42 -59
- niwrap_afni/afni/v_3d_lrflip.py +35 -55
- niwrap_afni/afni/v_3d_lss.py +39 -56
- niwrap_afni/afni/v_3d_mann_whitney.py +30 -54
- niwrap_afni/afni/v_3d_mask_to_ascii.py +25 -47
- niwrap_afni/afni/v_3d_match.py +49 -65
- niwrap_afni/afni/v_3d_mean.py +64 -70
- niwrap_afni/afni/v_3d_median_filter.py +39 -58
- niwrap_afni/afni/v_3d_mema.py +89 -87
- niwrap_afni/afni/v_3d_mepfm.py +43 -63
- niwrap_afni/afni/v_3d_mse.py +44 -60
- niwrap_afni/afni/v_3d_mss.py +66 -73
- niwrap_afni/afni/v_3d_multi_thresh.py +47 -61
- niwrap_afni/afni/v_3d_mvm.py +62 -72
- niwrap_afni/afni/v_3d_mvm_validator.py +23 -49
- niwrap_afni/afni/v_3d_net_corr.py +67 -72
- niwrap_afni/afni/v_3d_nlfim.py +134 -122
- niwrap_afni/afni/v_3d_normality_test.py +27 -48
- niwrap_afni/afni/v_3d_notes.py +36 -53
- niwrap_afni/afni/v_3d_nwarp_adjust.py +34 -56
- niwrap_afni/afni/v_3d_nwarp_apply.py +59 -73
- niwrap_afni/afni/v_3d_nwarp_cat.py +42 -58
- niwrap_afni/afni/v_3d_nwarp_funcs.py +35 -54
- niwrap_afni/afni/v_3d_nwarp_xyz.py +31 -52
- niwrap_afni/afni/v_3d_overlap.py +27 -49
- niwrap_afni/afni/{v_3d_par2_afni.py → v_3d_par2_afni_pl.py} +65 -80
- niwrap_afni/afni/v_3d_periodogram.py +35 -56
- niwrap_afni/afni/v_3d_pfm.py +62 -72
- niwrap_afni/afni/v_3d_polyfit.py +62 -73
- niwrap_afni/afni/v_3d_pval.py +32 -51
- niwrap_afni/afni/v_3d_pvmap.py +31 -52
- niwrap_afni/afni/v_3d_qwarp.py +64 -67
- niwrap_afni/afni/v_3d_rank.py +30 -51
- niwrap_afni/afni/v_3d_rankizer.py +37 -56
- niwrap_afni/afni/v_3d_re_ho.py +65 -76
- niwrap_afni/afni/v_3d_reg_ana.py +58 -68
- niwrap_afni/afni/v_3d_remlfit.py +64 -74
- niwrap_afni/afni/v_3d_retino_phase.py +71 -80
- niwrap_afni/afni/{v_3_droimaker.py → v_3d_roimaker.py} +100 -105
- niwrap_afni/afni/v_3d_roistats.py +52 -62
- niwrap_afni/afni/v_3d_row_fillin.py +33 -53
- niwrap_afni/afni/v_3d_rprog_demo.py +43 -57
- niwrap_afni/afni/v_3d_rsfc.py +78 -79
- niwrap_afni/afni/v_3d_seg.py +80 -86
- niwrap_afni/afni/v_3d_setup_group_in_corr.py +46 -60
- niwrap_afni/afni/v_3d_sharpen.py +30 -52
- niwrap_afni/afni/v_3d_signatures.py +33 -52
- niwrap_afni/afni/v_3d_skull_strip.py +27 -49
- niwrap_afni/afni/v_3d_slice_ndice.py +36 -54
- niwrap_afni/afni/v_3d_space_time_corr.py +36 -54
- niwrap_afni/afni/v_3d_spat_norm.py +40 -56
- niwrap_afni/afni/v_3d_stat_clust.py +44 -60
- niwrap_afni/afni/v_3d_surf2_vol.py +84 -87
- niwrap_afni/afni/v_3d_surf_mask.py +44 -60
- niwrap_afni/afni/v_3d_synthesize.py +34 -51
- niwrap_afni/afni/v_3d_tagalign.py +54 -64
- niwrap_afni/afni/v_3d_tcat.py +34 -53
- niwrap_afni/afni/v_3d_tcorr1_d.py +40 -57
- niwrap_afni/afni/v_3d_tcorr_map.py +66 -73
- niwrap_afni/afni/v_3d_tcorrelate.py +59 -68
- niwrap_afni/afni/v_3d_tfilter.py +29 -51
- niwrap_afni/afni/v_3d_tfitter.py +71 -78
- niwrap_afni/afni/v_3d_threeto_rgb.py +41 -58
- niwrap_afni/afni/v_3d_tnorm.py +37 -54
- niwrap_afni/afni/v_3d_tortoiseto_here.py +36 -55
- niwrap_afni/afni/v_3d_toutcount.py +44 -59
- niwrap_afni/afni/v_3d_toy_prog.py +54 -62
- niwrap_afni/afni/v_3d_tproject.py +77 -83
- niwrap_afni/afni/v_3d_tqual.py +36 -53
- niwrap_afni/afni/v_3d_track_id.py +139 -120
- niwrap_afni/afni/v_3d_trfix.py +33 -53
- niwrap_afni/afni/v_3d_tsgen.py +55 -66
- niwrap_afni/afni/v_3d_tshift.py +59 -71
- niwrap_afni/afni/v_3d_tsmooth.py +58 -69
- niwrap_afni/afni/v_3d_tsort.py +43 -57
- niwrap_afni/afni/v_3d_tsplit4_d.py +27 -51
- niwrap_afni/afni/v_3d_tstat.py +151 -115
- niwrap_afni/afni/v_3d_tto1_d.py +34 -53
- niwrap_afni/afni/v_3d_twoto_complex.py +35 -54
- niwrap_afni/afni/v_3d_undump.py +65 -72
- niwrap_afni/afni/v_3d_unifize.py +56 -67
- niwrap_afni/afni/v_3d_upsample.py +34 -53
- niwrap_afni/afni/v_3d_vec_rgb_to_hsl.py +33 -54
- niwrap_afni/afni/v_3d_vol2_surf.py +125 -108
- niwrap_afni/afni/v_3d_warp.py +71 -73
- niwrap_afni/afni/v_3d_warp_drive.py +108 -95
- niwrap_afni/afni/v_3d_wilcoxon.py +35 -53
- niwrap_afni/afni/v_3d_winsor.py +45 -61
- niwrap_afni/afni/v_3d_xclust_sim.py +64 -74
- niwrap_afni/afni/v_3d_xyzcat.py +30 -51
- niwrap_afni/afni/v_3d_zcat.py +36 -54
- niwrap_afni/afni/v_3d_zcutup.py +27 -49
- niwrap_afni/afni/v_3d_zeropad.py +62 -72
- niwrap_afni/afni/v_3d_zipper_zapper.py +63 -72
- niwrap_afni/afni/v_3d_zregrid.py +36 -55
- niwrap_afni/afni/v_3danisosmooth.py +72 -75
- niwrap_afni/afni/v_3daxialize.py +41 -56
- niwrap_afni/afni/v_3dbucket.py +43 -57
- niwrap_afni/afni/v_3dcalc.py +46 -61
- niwrap_afni/afni/v_3dclust.py +64 -69
- niwrap_afni/afni/v_3dcopy.py +32 -49
- niwrap_afni/afni/v_3ddelay.py +83 -84
- niwrap_afni/afni/v_3ddot.py +50 -60
- niwrap_afni/afni/v_3ddot_beta.py +28 -49
- niwrap_afni/afni/v_3dedge3.py +40 -56
- niwrap_afni/afni/v_3dedgedog.py +59 -72
- niwrap_afni/afni/v_3dfim_.py +60 -73
- niwrap_afni/afni/v_3dfractionize.py +36 -54
- niwrap_afni/afni/v_3dhistog.py +63 -70
- niwrap_afni/afni/v_3dinfill.py +48 -63
- niwrap_afni/afni/v_3dinfo.py +250 -161
- niwrap_afni/afni/v_3dkmeans.py +73 -79
- niwrap_afni/afni/v_3dmask_svd.py +46 -62
- niwrap_afni/afni/v_3dmask_tool.py +53 -65
- niwrap_afni/afni/v_3dmaskave.py +36 -56
- niwrap_afni/afni/v_3dmaskdump.py +73 -78
- niwrap_afni/afni/v_3dmatcalc.py +29 -50
- niwrap_afni/afni/v_3dmatmult.py +31 -51
- niwrap_afni/afni/v_3dmaxdisp.py +30 -50
- niwrap_afni/afni/v_3dmaxima.py +68 -70
- niwrap_afni/afni/v_3dmerge.py +48 -61
- niwrap_afni/afni/v_3dnewid.py +37 -53
- niwrap_afni/afni/v_3dnvals.py +24 -45
- niwrap_afni/afni/v_3dpc.py +58 -68
- niwrap_afni/afni/v_3drefit.py +65 -73
- niwrap_afni/afni/v_3drename.py +22 -44
- niwrap_afni/afni/v_3dresample.py +38 -56
- niwrap_afni/afni/v_3dretroicor.py +51 -67
- niwrap_afni/afni/v_3drotate.py +83 -83
- niwrap_afni/afni/v_3dsvm.py +90 -88
- niwrap_afni/afni/v_3dsvm_linpredict.py +25 -47
- niwrap_afni/afni/v_3dto_xdataset.py +25 -47
- niwrap_afni/afni/v_3dttest__.py +77 -81
- niwrap_afni/afni/v_3dvolreg.py +60 -70
- niwrap_afni/afni/v_4swap.py +22 -44
- niwrap_afni/afni/v__1d_diff_mag.py +20 -44
- niwrap_afni/afni/v__2dwarper.py +20 -44
- niwrap_afni/afni/v__2dwarper_allin.py +28 -50
- niwrap_afni/afni/v__4_daverage.py +22 -44
- niwrap_afni/afni/v__add_edge.py +59 -69
- niwrap_afni/afni/v__afni_env.py +42 -56
- niwrap_afni/afni/v__afni_orient2_raimap.py +20 -43
- niwrap_afni/afni/v__afni_orient_sign.py +21 -45
- niwrap_afni/afni/v__afni_r_package_install.py +34 -52
- niwrap_afni/afni/v__afni_refacer_make_master.py +20 -44
- niwrap_afni/afni/v__afni_refacer_make_onebig_a12.py +21 -45
- niwrap_afni/afni/v__afni_refacer_run.py +55 -67
- niwrap_afni/afni/v__afni_run_me.py +24 -45
- niwrap_afni/afni/v__align_centers.py +57 -68
- niwrap_afni/afni/v__align_partial_oblique.py +42 -58
- niwrap_afni/afni/v__anaticor.py +50 -61
- niwrap_afni/afni/v__animal_warper.py +113 -104
- niwrap_afni/afni/v__atlasize.py +67 -74
- niwrap_afni/afni/v__auto_tlrc.py +119 -105
- niwrap_afni/afni/v__build_afni_xlib.py +30 -48
- niwrap_afni/afni/v__center_distance.py +22 -45
- niwrap_afni/afni/v__chauffeur_afni.py +68 -75
- niwrap_afni/afni/v__check_for_afni_dset.py +21 -45
- niwrap_afni/afni/v__clip_volume.py +71 -78
- niwrap_afni/afni/v__clust_exp_cat_lab.py +25 -47
- niwrap_afni/afni/v__clust_exp_run_shiny.py +22 -44
- niwrap_afni/afni/v__command_globb.py +27 -51
- niwrap_afni/afni/v__compute_gcor.py +38 -56
- niwrap_afni/afni/v__compute_oc_weights.py +47 -62
- niwrap_afni/afni/v__deblank_file_names.py +35 -51
- niwrap_afni/afni/v__demo_prompt.py +20 -44
- niwrap_afni/afni/v__dice_metric.py +48 -59
- niwrap_afni/afni/v__diff_files.py +47 -58
- niwrap_afni/afni/v__diff_tree.py +61 -67
- niwrap_afni/afni/v__djunct_4d_imager.py +37 -58
- niwrap_afni/afni/v__djunct_4d_slices_to_3d_vol.py +20 -44
- niwrap_afni/afni/v__djunct_anonymize.py +28 -48
- niwrap_afni/afni/v__djunct_dwi_selector_tcsh.py +170 -0
- niwrap_afni/afni/v__djunct_edgy_align_check.py +88 -86
- niwrap_afni/afni/v__djunct_modal_smoothing_with_rep.py +43 -60
- niwrap_afni/afni/v__djunct_montage_coordinator.py +36 -54
- niwrap_afni/afni/v__djunct_overlap_check.py +80 -80
- niwrap_afni/afni/v__djunct_ssw_intermed_edge_imgs.py +54 -63
- niwrap_afni/afni/v__do_examples.py +20 -44
- niwrap_afni/afni/v__electro_grid.py +35 -54
- niwrap_afni/afni/v__examine_gen_feat_dists.py +42 -57
- niwrap_afni/afni/v__extract_meica_ortvec.py +36 -55
- niwrap_afni/afni/v__fast_roi.py +41 -56
- niwrap_afni/afni/v__fat_tract_colorize.py +37 -55
- niwrap_afni/afni/v__find_afni_dset_path.py +30 -48
- niwrap_afni/afni/v__fix_fssphere.py +32 -51
- niwrap_afni/afni/v__float_fix.py +24 -47
- niwrap_afni/afni/v__from_rai.py +22 -44
- niwrap_afni/afni/v__fs_roi_label.py +45 -60
- niwrap_afni/afni/v__fslabel2dset.py +33 -52
- niwrap_afni/afni/v__get_afni_dims.py +20 -44
- niwrap_afni/afni/v__get_afni_id.py +20 -44
- niwrap_afni/afni/v__get_afni_orient.py +23 -46
- niwrap_afni/afni/v__get_afni_prefix.py +23 -45
- niwrap_afni/afni/v__get_afni_res.py +23 -45
- niwrap_afni/afni/v__get_afni_version.py +21 -45
- niwrap_afni/afni/v__get_afni_view.py +20 -44
- niwrap_afni/afni/v__grad_flip_test.py +58 -69
- niwrap_afni/afni/v__grayplot.py +33 -53
- niwrap_afni/afni/v__help_afni.py +31 -49
- niwrap_afni/afni/v__is_oblique.py +20 -44
- niwrap_afni/afni/v__iso_masks.py +23 -45
- niwrap_afni/afni/v__make_label_table.py +116 -106
- niwrap_afni/afni/v__make_plug_diff.py +32 -49
- niwrap_afni/afni/v__measure_bb_thick.py +59 -72
- niwrap_afni/afni/v__measure_erosion_thick.py +45 -60
- niwrap_afni/afni/v__measure_in2out.py +50 -63
- niwrap_afni/afni/v__move_to_series_dirs.py +41 -57
- niwrap_afni/afni/v__no_ext.py +23 -46
- niwrap_afni/afni/v__no_pound.py +20 -43
- niwrap_afni/afni/v__noisy_skull_strip.py +29 -51
- niwrap_afni/afni/v__np.py +28 -50
- niwrap_afni/afni/v__parse_afni_name.py +24 -48
- niwrap_afni/afni/v__purify_1_d.py +26 -47
- niwrap_afni/afni/v__quiet_talkers.py +38 -54
- niwrap_afni/afni/v__radial_correlate.py +74 -79
- niwrap_afni/afni/v__rename_panga.py +43 -58
- niwrap_afni/afni/v__reorder.py +38 -56
- niwrap_afni/afni/v__retino_proc.py +130 -114
- niwrap_afni/afni/v__roi_corr_mat.py +42 -57
- niwrap_afni/afni/v__roi_decluster.py +40 -57
- niwrap_afni/afni/v__roi_modal_grow.py +39 -56
- niwrap_afni/afni/v__scale_volume.py +38 -55
- niwrap_afni/afni/v__script_check.py +25 -47
- niwrap_afni/afni/v__shift_volume.py +36 -55
- niwrap_afni/afni/v__show_dynamic_range.py +26 -50
- niwrap_afni/afni/v__simulate_motion.py +58 -67
- niwrap_afni/afni/v__skull_strip_touch_up.py +36 -55
- niwrap_afni/afni/v__snapshot_volreg.py +29 -50
- niwrap_afni/afni/v__spharm_examples.py +31 -49
- niwrap_afni/afni/v__sswarper.py +89 -89
- niwrap_afni/afni/v__statauxcode.py +20 -44
- niwrap_afni/afni/v__suma_acknowledge.py +40 -58
- niwrap_afni/afni/v__suma_align_to_experiment.py +75 -78
- niwrap_afni/afni/v__suma_fsvol_to_brik.py +24 -47
- niwrap_afni/afni/v__suma_make_spec_caret.py +35 -54
- niwrap_afni/afni/v__suma_make_spec_fs.py +60 -69
- niwrap_afni/afni/v__suma_make_spec_sf.py +28 -50
- niwrap_afni/afni/v__suma_renumber_fs.py +29 -53
- niwrap_afni/afni/v__suma_reprefixize_spec.py +28 -51
- niwrap_afni/afni/v__surf_smooth_heat_07_examples.py +20 -43
- niwrap_afni/afni/v__surf_to_vol_spackle.py +57 -68
- niwrap_afni/afni/v__t1scale.py +50 -61
- niwrap_afni/afni/v__thickness_master.py +28 -50
- niwrap_afni/afni/v__time_diff.py +22 -44
- niwrap_afni/afni/v__to_mni_awarp.py +22 -48
- niwrap_afni/afni/v__to_mni_qwarpar.py +23 -46
- niwrap_afni/afni/v__to_rai.py +22 -44
- niwrap_afni/afni/v__update_afni_binaries.py +73 -73
- niwrap_afni/afni/v__vol_center.py +23 -45
- niwrap_afni/afni/v__xyz_to_ijk.py +30 -50
- niwrap_afni/afni/vecwarp.py +41 -59
- niwrap_afni/afni/waver.py +80 -83
- niwrap_afni/afni/whirlgif.py +42 -60
- niwrap_afni/afni/xmat_tool_py.py +66 -70
- niwrap_afni-0.7.0.dist-info/METADATA +8 -0
- niwrap_afni-0.7.0.dist-info/RECORD +569 -0
- niwrap_afni-0.7.0.dist-info/WHEEL +4 -0
- niwrap_afni/afni/v__djunct_dwi_selector.py +0 -192
- niwrap_afni-0.6.3.dist-info/METADATA +0 -8
- niwrap_afni-0.6.3.dist-info/RECORD +0 -569
- niwrap_afni-0.6.3.dist-info/WHEEL +0 -4
|
@@ -5,16 +5,29 @@ import typing
|
|
|
5
5
|
import pathlib
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
|
-
|
|
9
|
-
id="
|
|
10
|
-
name="ap_run_simple_rest",
|
|
8
|
+
AP_RUN_SIMPLE_REST_TCSH_METADATA = Metadata(
|
|
9
|
+
id="7e737e7c00ddc467814f6d863dc72a85ba7f5b1b.boutiques",
|
|
10
|
+
name="ap_run_simple_rest.tcsh",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
13
13
|
)
|
|
14
14
|
|
|
15
15
|
|
|
16
|
-
|
|
17
|
-
"
|
|
16
|
+
ApRunSimpleRestTcshParameters = typing.TypedDict('ApRunSimpleRestTcshParameters', {
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/ap_run_simple_rest.tcsh"]],
|
|
18
|
+
"anat": typing.NotRequired[InputPathType | None],
|
|
19
|
+
"epi": list[InputPathType],
|
|
20
|
+
"nt_rm": typing.NotRequired[float | None],
|
|
21
|
+
"run_ap": bool,
|
|
22
|
+
"run_proc": bool,
|
|
23
|
+
"subjid": typing.NotRequired[str | None],
|
|
24
|
+
"template": typing.NotRequired[InputPathType | None],
|
|
25
|
+
"compressor": typing.NotRequired[str | None],
|
|
26
|
+
"verb": typing.NotRequired[float | None],
|
|
27
|
+
"echo": bool,
|
|
28
|
+
})
|
|
29
|
+
ApRunSimpleRestTcshParametersTagged = typing.TypedDict('ApRunSimpleRestTcshParametersTagged', {
|
|
30
|
+
"@type": typing.Literal["afni/ap_run_simple_rest.tcsh"],
|
|
18
31
|
"anat": typing.NotRequired[InputPathType | None],
|
|
19
32
|
"epi": list[InputPathType],
|
|
20
33
|
"nt_rm": typing.NotRequired[float | None],
|
|
@@ -28,41 +41,9 @@ ApRunSimpleRestParameters = typing.TypedDict('ApRunSimpleRestParameters', {
|
|
|
28
41
|
})
|
|
29
42
|
|
|
30
43
|
|
|
31
|
-
|
|
32
|
-
t: str,
|
|
33
|
-
) -> typing.Any:
|
|
34
|
-
"""
|
|
35
|
-
Get build cargs function by command type.
|
|
36
|
-
|
|
37
|
-
Args:
|
|
38
|
-
t: Command type.
|
|
39
|
-
Returns:
|
|
40
|
-
Build cargs function.
|
|
41
|
-
"""
|
|
42
|
-
return {
|
|
43
|
-
"ap_run_simple_rest": ap_run_simple_rest_cargs,
|
|
44
|
-
}.get(t)
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
def dyn_outputs(
|
|
48
|
-
t: str,
|
|
49
|
-
) -> typing.Any:
|
|
50
|
-
"""
|
|
51
|
-
Get build outputs function by command type.
|
|
52
|
-
|
|
53
|
-
Args:
|
|
54
|
-
t: Command type.
|
|
55
|
-
Returns:
|
|
56
|
-
Build outputs function.
|
|
57
|
-
"""
|
|
58
|
-
return {
|
|
59
|
-
"ap_run_simple_rest": ap_run_simple_rest_outputs,
|
|
60
|
-
}.get(t)
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
class ApRunSimpleRestOutputs(typing.NamedTuple):
|
|
44
|
+
class ApRunSimpleRestTcshOutputs(typing.NamedTuple):
|
|
64
45
|
"""
|
|
65
|
-
Output object returned when calling `
|
|
46
|
+
Output object returned when calling `ApRunSimpleRestTcshParameters(...)`.
|
|
66
47
|
"""
|
|
67
48
|
root: OutputPathType
|
|
68
49
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -72,11 +53,9 @@ class ApRunSimpleRestOutputs(typing.NamedTuple):
|
|
|
72
53
|
"""proc script (if AP is run)"""
|
|
73
54
|
proc_results_dir: OutputPathType | None
|
|
74
55
|
"""proc results directory (if run)"""
|
|
75
|
-
text_output_files: OutputPathType
|
|
76
|
-
"""Text output files from AP and proc scripts"""
|
|
77
56
|
|
|
78
57
|
|
|
79
|
-
def
|
|
58
|
+
def ap_run_simple_rest_tcsh_params(
|
|
80
59
|
epi: list[InputPathType],
|
|
81
60
|
anat: InputPathType | None = None,
|
|
82
61
|
nt_rm: float | None = None,
|
|
@@ -87,7 +66,7 @@ def ap_run_simple_rest_params(
|
|
|
87
66
|
compressor: str | None = None,
|
|
88
67
|
verb: float | None = None,
|
|
89
68
|
echo: bool = False,
|
|
90
|
-
) ->
|
|
69
|
+
) -> ApRunSimpleRestTcshParametersTagged:
|
|
91
70
|
"""
|
|
92
71
|
Build parameters.
|
|
93
72
|
|
|
@@ -106,7 +85,7 @@ def ap_run_simple_rest_params(
|
|
|
106
85
|
Parameter dictionary
|
|
107
86
|
"""
|
|
108
87
|
params = {
|
|
109
|
-
"
|
|
88
|
+
"@type": "afni/ap_run_simple_rest.tcsh",
|
|
110
89
|
"epi": epi,
|
|
111
90
|
"run_ap": run_ap,
|
|
112
91
|
"run_proc": run_proc,
|
|
@@ -127,8 +106,8 @@ def ap_run_simple_rest_params(
|
|
|
127
106
|
return params
|
|
128
107
|
|
|
129
108
|
|
|
130
|
-
def
|
|
131
|
-
params:
|
|
109
|
+
def ap_run_simple_rest_tcsh_cargs(
|
|
110
|
+
params: ApRunSimpleRestTcshParameters,
|
|
132
111
|
execution: Execution,
|
|
133
112
|
) -> list[str]:
|
|
134
113
|
"""
|
|
@@ -142,53 +121,53 @@ def ap_run_simple_rest_cargs(
|
|
|
142
121
|
"""
|
|
143
122
|
cargs = []
|
|
144
123
|
cargs.append("ap_run_simple_rest.tcsh")
|
|
145
|
-
if params.get("anat") is not None:
|
|
124
|
+
if params.get("anat", None) is not None:
|
|
146
125
|
cargs.extend([
|
|
147
126
|
"-anat",
|
|
148
|
-
execution.input_file(params.get("anat"))
|
|
127
|
+
execution.input_file(params.get("anat", None))
|
|
149
128
|
])
|
|
150
129
|
cargs.extend([
|
|
151
130
|
"-epi",
|
|
152
|
-
*[execution.input_file(f) for f in params.get("epi")]
|
|
131
|
+
*[execution.input_file(f) for f in params.get("epi", None)]
|
|
153
132
|
])
|
|
154
|
-
if params.get("nt_rm") is not None:
|
|
133
|
+
if params.get("nt_rm", None) is not None:
|
|
155
134
|
cargs.extend([
|
|
156
135
|
"-nt_rm",
|
|
157
|
-
str(params.get("nt_rm"))
|
|
136
|
+
str(params.get("nt_rm", None))
|
|
158
137
|
])
|
|
159
|
-
if params.get("run_ap"):
|
|
138
|
+
if params.get("run_ap", False):
|
|
160
139
|
cargs.append("-run_ap")
|
|
161
|
-
if params.get("run_proc"):
|
|
140
|
+
if params.get("run_proc", False):
|
|
162
141
|
cargs.append("-run_proc")
|
|
163
|
-
if params.get("subjid") is not None:
|
|
142
|
+
if params.get("subjid", None) is not None:
|
|
164
143
|
cargs.extend([
|
|
165
144
|
"-subjid",
|
|
166
|
-
params.get("subjid")
|
|
145
|
+
params.get("subjid", None)
|
|
167
146
|
])
|
|
168
|
-
if params.get("template") is not None:
|
|
147
|
+
if params.get("template", None) is not None:
|
|
169
148
|
cargs.extend([
|
|
170
149
|
"-template",
|
|
171
|
-
execution.input_file(params.get("template"))
|
|
150
|
+
execution.input_file(params.get("template", None))
|
|
172
151
|
])
|
|
173
|
-
if params.get("compressor") is not None:
|
|
152
|
+
if params.get("compressor", None) is not None:
|
|
174
153
|
cargs.extend([
|
|
175
154
|
"-compressor",
|
|
176
|
-
params.get("compressor")
|
|
155
|
+
params.get("compressor", None)
|
|
177
156
|
])
|
|
178
|
-
if params.get("verb") is not None:
|
|
157
|
+
if params.get("verb", None) is not None:
|
|
179
158
|
cargs.extend([
|
|
180
159
|
"-verb",
|
|
181
|
-
str(params.get("verb"))
|
|
160
|
+
str(params.get("verb", None))
|
|
182
161
|
])
|
|
183
|
-
if params.get("echo"):
|
|
162
|
+
if params.get("echo", False):
|
|
184
163
|
cargs.append("-echo")
|
|
185
164
|
return cargs
|
|
186
165
|
|
|
187
166
|
|
|
188
|
-
def
|
|
189
|
-
params:
|
|
167
|
+
def ap_run_simple_rest_tcsh_outputs(
|
|
168
|
+
params: ApRunSimpleRestTcshParameters,
|
|
190
169
|
execution: Execution,
|
|
191
|
-
) ->
|
|
170
|
+
) -> ApRunSimpleRestTcshOutputs:
|
|
192
171
|
"""
|
|
193
172
|
Build outputs object containing output file paths and possibly stdout/stderr.
|
|
194
173
|
|
|
@@ -198,21 +177,22 @@ def ap_run_simple_rest_outputs(
|
|
|
198
177
|
Returns:
|
|
199
178
|
Outputs object.
|
|
200
179
|
"""
|
|
201
|
-
ret =
|
|
180
|
+
ret = ApRunSimpleRestTcshOutputs(
|
|
202
181
|
root=execution.output_file("."),
|
|
203
|
-
run_ap_script=execution.output_file("run_ap_" + params.get("subjid")) if (params.get("subjid") is not None) else None,
|
|
204
|
-
proc_script=execution.output_file("proc." + params.get("subjid")) if (params.get("subjid") is not None) else None,
|
|
205
|
-
proc_results_dir=execution.output_file(params.get("subjid") + ".results") if (params.get("subjid") is not None) else None,
|
|
206
|
-
text_output_files=execution.output_file("out.*"),
|
|
182
|
+
run_ap_script=execution.output_file("run_ap_" + params.get("subjid", None)) if (params.get("subjid") is not None) else None,
|
|
183
|
+
proc_script=execution.output_file("proc." + params.get("subjid", None)) if (params.get("subjid") is not None) else None,
|
|
184
|
+
proc_results_dir=execution.output_file(params.get("subjid", None) + ".results") if (params.get("subjid") is not None) else None,
|
|
207
185
|
)
|
|
208
186
|
return ret
|
|
209
187
|
|
|
210
188
|
|
|
211
|
-
def
|
|
212
|
-
params:
|
|
213
|
-
|
|
214
|
-
) ->
|
|
189
|
+
def ap_run_simple_rest_tcsh_execute(
|
|
190
|
+
params: ApRunSimpleRestTcshParameters,
|
|
191
|
+
runner: Runner | None = None,
|
|
192
|
+
) -> ApRunSimpleRestTcshOutputs:
|
|
215
193
|
"""
|
|
194
|
+
ap_run_simple_rest.tcsh
|
|
195
|
+
|
|
216
196
|
Run a quick afni_proc.py analysis for QC.
|
|
217
197
|
|
|
218
198
|
Author: AFNI Developers
|
|
@@ -221,18 +201,20 @@ def ap_run_simple_rest_execute(
|
|
|
221
201
|
|
|
222
202
|
Args:
|
|
223
203
|
params: The parameters.
|
|
224
|
-
|
|
204
|
+
runner: Command runner.
|
|
225
205
|
Returns:
|
|
226
|
-
NamedTuple of outputs (described in `
|
|
206
|
+
NamedTuple of outputs (described in `ApRunSimpleRestTcshOutputs`).
|
|
227
207
|
"""
|
|
208
|
+
runner = runner or get_global_runner()
|
|
209
|
+
execution = runner.start_execution(AP_RUN_SIMPLE_REST_TCSH_METADATA)
|
|
228
210
|
params = execution.params(params)
|
|
229
|
-
cargs =
|
|
230
|
-
ret =
|
|
211
|
+
cargs = ap_run_simple_rest_tcsh_cargs(params, execution)
|
|
212
|
+
ret = ap_run_simple_rest_tcsh_outputs(params, execution)
|
|
231
213
|
execution.run(cargs)
|
|
232
214
|
return ret
|
|
233
215
|
|
|
234
216
|
|
|
235
|
-
def
|
|
217
|
+
def ap_run_simple_rest_tcsh(
|
|
236
218
|
epi: list[InputPathType],
|
|
237
219
|
anat: InputPathType | None = None,
|
|
238
220
|
nt_rm: float | None = None,
|
|
@@ -244,8 +226,10 @@ def ap_run_simple_rest(
|
|
|
244
226
|
verb: float | None = None,
|
|
245
227
|
echo: bool = False,
|
|
246
228
|
runner: Runner | None = None,
|
|
247
|
-
) ->
|
|
229
|
+
) -> ApRunSimpleRestTcshOutputs:
|
|
248
230
|
"""
|
|
231
|
+
ap_run_simple_rest.tcsh
|
|
232
|
+
|
|
249
233
|
Run a quick afni_proc.py analysis for QC.
|
|
250
234
|
|
|
251
235
|
Author: AFNI Developers
|
|
@@ -265,11 +249,9 @@ def ap_run_simple_rest(
|
|
|
265
249
|
echo: Same as verbosity level 3.
|
|
266
250
|
runner: Command runner.
|
|
267
251
|
Returns:
|
|
268
|
-
NamedTuple of outputs (described in `
|
|
252
|
+
NamedTuple of outputs (described in `ApRunSimpleRestTcshOutputs`).
|
|
269
253
|
"""
|
|
270
|
-
|
|
271
|
-
execution = runner.start_execution(AP_RUN_SIMPLE_REST_METADATA)
|
|
272
|
-
params = ap_run_simple_rest_params(
|
|
254
|
+
params = ap_run_simple_rest_tcsh_params(
|
|
273
255
|
anat=anat,
|
|
274
256
|
epi=epi,
|
|
275
257
|
nt_rm=nt_rm,
|
|
@@ -281,13 +263,13 @@ def ap_run_simple_rest(
|
|
|
281
263
|
verb=verb,
|
|
282
264
|
echo=echo,
|
|
283
265
|
)
|
|
284
|
-
return
|
|
266
|
+
return ap_run_simple_rest_tcsh_execute(params, runner)
|
|
285
267
|
|
|
286
268
|
|
|
287
269
|
__all__ = [
|
|
288
|
-
"
|
|
289
|
-
"
|
|
290
|
-
"
|
|
291
|
-
"
|
|
292
|
-
"
|
|
270
|
+
"AP_RUN_SIMPLE_REST_TCSH_METADATA",
|
|
271
|
+
"ApRunSimpleRestTcshOutputs",
|
|
272
|
+
"ap_run_simple_rest_tcsh",
|
|
273
|
+
"ap_run_simple_rest_tcsh_execute",
|
|
274
|
+
"ap_run_simple_rest_tcsh_params",
|
|
293
275
|
]
|
|
@@ -5,62 +5,35 @@ import typing
|
|
|
5
5
|
import pathlib
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
|
-
|
|
9
|
-
id="
|
|
10
|
-
name="apqc_make_html",
|
|
8
|
+
APQC_MAKE_HTML_PY_METADATA = Metadata(
|
|
9
|
+
id="75d15c133646b9af46b8b07280f7d7208042b9a7.boutiques",
|
|
10
|
+
name="apqc_make_html.py",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
13
13
|
)
|
|
14
14
|
|
|
15
15
|
|
|
16
|
-
|
|
17
|
-
"
|
|
16
|
+
ApqcMakeHtmlPyParameters = typing.TypedDict('ApqcMakeHtmlPyParameters', {
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/apqc_make_html.py"]],
|
|
18
|
+
"qc_dir": str,
|
|
19
|
+
})
|
|
20
|
+
ApqcMakeHtmlPyParametersTagged = typing.TypedDict('ApqcMakeHtmlPyParametersTagged', {
|
|
21
|
+
"@type": typing.Literal["afni/apqc_make_html.py"],
|
|
18
22
|
"qc_dir": str,
|
|
19
23
|
})
|
|
20
24
|
|
|
21
25
|
|
|
22
|
-
|
|
23
|
-
t: str,
|
|
24
|
-
) -> typing.Any:
|
|
25
|
-
"""
|
|
26
|
-
Get build cargs function by command type.
|
|
27
|
-
|
|
28
|
-
Args:
|
|
29
|
-
t: Command type.
|
|
30
|
-
Returns:
|
|
31
|
-
Build cargs function.
|
|
32
|
-
"""
|
|
33
|
-
return {
|
|
34
|
-
"apqc_make_html": apqc_make_html_cargs,
|
|
35
|
-
}.get(t)
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
def dyn_outputs(
|
|
39
|
-
t: str,
|
|
40
|
-
) -> typing.Any:
|
|
41
|
-
"""
|
|
42
|
-
Get build outputs function by command type.
|
|
43
|
-
|
|
44
|
-
Args:
|
|
45
|
-
t: Command type.
|
|
46
|
-
Returns:
|
|
47
|
-
Build outputs function.
|
|
48
|
-
"""
|
|
49
|
-
return {
|
|
50
|
-
}.get(t)
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
class ApqcMakeHtmlOutputs(typing.NamedTuple):
|
|
26
|
+
class ApqcMakeHtmlPyOutputs(typing.NamedTuple):
|
|
54
27
|
"""
|
|
55
|
-
Output object returned when calling `
|
|
28
|
+
Output object returned when calling `ApqcMakeHtmlPyParameters(...)`.
|
|
56
29
|
"""
|
|
57
30
|
root: OutputPathType
|
|
58
31
|
"""Output root folder. This is the root folder for all outputs."""
|
|
59
32
|
|
|
60
33
|
|
|
61
|
-
def
|
|
34
|
+
def apqc_make_html_py_params(
|
|
62
35
|
qc_dir: str,
|
|
63
|
-
) ->
|
|
36
|
+
) -> ApqcMakeHtmlPyParametersTagged:
|
|
64
37
|
"""
|
|
65
38
|
Build parameters.
|
|
66
39
|
|
|
@@ -70,14 +43,14 @@ def apqc_make_html_params(
|
|
|
70
43
|
Parameter dictionary
|
|
71
44
|
"""
|
|
72
45
|
params = {
|
|
73
|
-
"
|
|
46
|
+
"@type": "afni/apqc_make_html.py",
|
|
74
47
|
"qc_dir": qc_dir,
|
|
75
48
|
}
|
|
76
49
|
return params
|
|
77
50
|
|
|
78
51
|
|
|
79
|
-
def
|
|
80
|
-
params:
|
|
52
|
+
def apqc_make_html_py_cargs(
|
|
53
|
+
params: ApqcMakeHtmlPyParameters,
|
|
81
54
|
execution: Execution,
|
|
82
55
|
) -> list[str]:
|
|
83
56
|
"""
|
|
@@ -93,15 +66,15 @@ def apqc_make_html_cargs(
|
|
|
93
66
|
cargs.append("apqc_make_html.py")
|
|
94
67
|
cargs.extend([
|
|
95
68
|
"-qc_dir",
|
|
96
|
-
params.get("qc_dir")
|
|
69
|
+
params.get("qc_dir", None)
|
|
97
70
|
])
|
|
98
71
|
return cargs
|
|
99
72
|
|
|
100
73
|
|
|
101
|
-
def
|
|
102
|
-
params:
|
|
74
|
+
def apqc_make_html_py_outputs(
|
|
75
|
+
params: ApqcMakeHtmlPyParameters,
|
|
103
76
|
execution: Execution,
|
|
104
|
-
) ->
|
|
77
|
+
) -> ApqcMakeHtmlPyOutputs:
|
|
105
78
|
"""
|
|
106
79
|
Build outputs object containing output file paths and possibly stdout/stderr.
|
|
107
80
|
|
|
@@ -111,17 +84,19 @@ def apqc_make_html_outputs(
|
|
|
111
84
|
Returns:
|
|
112
85
|
Outputs object.
|
|
113
86
|
"""
|
|
114
|
-
ret =
|
|
87
|
+
ret = ApqcMakeHtmlPyOutputs(
|
|
115
88
|
root=execution.output_file("."),
|
|
116
89
|
)
|
|
117
90
|
return ret
|
|
118
91
|
|
|
119
92
|
|
|
120
|
-
def
|
|
121
|
-
params:
|
|
122
|
-
|
|
123
|
-
) ->
|
|
93
|
+
def apqc_make_html_py_execute(
|
|
94
|
+
params: ApqcMakeHtmlPyParameters,
|
|
95
|
+
runner: Runner | None = None,
|
|
96
|
+
) -> ApqcMakeHtmlPyOutputs:
|
|
124
97
|
"""
|
|
98
|
+
apqc_make_html.py
|
|
99
|
+
|
|
125
100
|
Tool to generate HTML reports.
|
|
126
101
|
|
|
127
102
|
Author: AFNI Developers
|
|
@@ -130,22 +105,26 @@ def apqc_make_html_execute(
|
|
|
130
105
|
|
|
131
106
|
Args:
|
|
132
107
|
params: The parameters.
|
|
133
|
-
|
|
108
|
+
runner: Command runner.
|
|
134
109
|
Returns:
|
|
135
|
-
NamedTuple of outputs (described in `
|
|
110
|
+
NamedTuple of outputs (described in `ApqcMakeHtmlPyOutputs`).
|
|
136
111
|
"""
|
|
112
|
+
runner = runner or get_global_runner()
|
|
113
|
+
execution = runner.start_execution(APQC_MAKE_HTML_PY_METADATA)
|
|
137
114
|
params = execution.params(params)
|
|
138
|
-
cargs =
|
|
139
|
-
ret =
|
|
115
|
+
cargs = apqc_make_html_py_cargs(params, execution)
|
|
116
|
+
ret = apqc_make_html_py_outputs(params, execution)
|
|
140
117
|
execution.run(cargs)
|
|
141
118
|
return ret
|
|
142
119
|
|
|
143
120
|
|
|
144
|
-
def
|
|
121
|
+
def apqc_make_html_py(
|
|
145
122
|
qc_dir: str,
|
|
146
123
|
runner: Runner | None = None,
|
|
147
|
-
) ->
|
|
124
|
+
) -> ApqcMakeHtmlPyOutputs:
|
|
148
125
|
"""
|
|
126
|
+
apqc_make_html.py
|
|
127
|
+
|
|
149
128
|
Tool to generate HTML reports.
|
|
150
129
|
|
|
151
130
|
Author: AFNI Developers
|
|
@@ -156,20 +135,18 @@ def apqc_make_html(
|
|
|
156
135
|
qc_dir: Directory where QC files will be saved.
|
|
157
136
|
runner: Command runner.
|
|
158
137
|
Returns:
|
|
159
|
-
NamedTuple of outputs (described in `
|
|
138
|
+
NamedTuple of outputs (described in `ApqcMakeHtmlPyOutputs`).
|
|
160
139
|
"""
|
|
161
|
-
|
|
162
|
-
execution = runner.start_execution(APQC_MAKE_HTML_METADATA)
|
|
163
|
-
params = apqc_make_html_params(
|
|
140
|
+
params = apqc_make_html_py_params(
|
|
164
141
|
qc_dir=qc_dir,
|
|
165
142
|
)
|
|
166
|
-
return
|
|
143
|
+
return apqc_make_html_py_execute(params, runner)
|
|
167
144
|
|
|
168
145
|
|
|
169
146
|
__all__ = [
|
|
170
|
-
"
|
|
171
|
-
"
|
|
172
|
-
"
|
|
173
|
-
"
|
|
174
|
-
"
|
|
147
|
+
"APQC_MAKE_HTML_PY_METADATA",
|
|
148
|
+
"ApqcMakeHtmlPyOutputs",
|
|
149
|
+
"apqc_make_html_py",
|
|
150
|
+
"apqc_make_html_py_execute",
|
|
151
|
+
"apqc_make_html_py_params",
|
|
175
152
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
APQC_MAKE_TCSH_PY_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="646c2bef5e48af8a0f1a618620dc2512ca4c0386.boutiques",
|
|
10
10
|
name="apqc_make_tcsh.py",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,49 +14,26 @@ APQC_MAKE_TCSH_PY_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
ApqcMakeTcshPyParameters = typing.TypedDict('ApqcMakeTcshPyParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/apqc_make_tcsh.py"]],
|
|
18
|
+
"uvar_json": InputPathType,
|
|
19
|
+
"subj_dir": str,
|
|
20
|
+
"review_style": typing.NotRequired[str | None],
|
|
21
|
+
"mot_grayplot_off": bool,
|
|
22
|
+
"vstat_list": typing.NotRequired[list[str] | None],
|
|
23
|
+
})
|
|
24
|
+
ApqcMakeTcshPyParametersTagged = typing.TypedDict('ApqcMakeTcshPyParametersTagged', {
|
|
25
|
+
"@type": typing.Literal["afni/apqc_make_tcsh.py"],
|
|
18
26
|
"uvar_json": InputPathType,
|
|
19
27
|
"subj_dir": str,
|
|
20
28
|
"review_style": typing.NotRequired[str | None],
|
|
21
29
|
"mot_grayplot_off": bool,
|
|
22
30
|
"vstat_list": typing.NotRequired[list[str] | None],
|
|
23
31
|
})
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
def dyn_cargs(
|
|
27
|
-
t: str,
|
|
28
|
-
) -> typing.Any:
|
|
29
|
-
"""
|
|
30
|
-
Get build cargs function by command type.
|
|
31
|
-
|
|
32
|
-
Args:
|
|
33
|
-
t: Command type.
|
|
34
|
-
Returns:
|
|
35
|
-
Build cargs function.
|
|
36
|
-
"""
|
|
37
|
-
return {
|
|
38
|
-
"apqc_make_tcsh.py": apqc_make_tcsh_py_cargs,
|
|
39
|
-
}.get(t)
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
def dyn_outputs(
|
|
43
|
-
t: str,
|
|
44
|
-
) -> typing.Any:
|
|
45
|
-
"""
|
|
46
|
-
Get build outputs function by command type.
|
|
47
|
-
|
|
48
|
-
Args:
|
|
49
|
-
t: Command type.
|
|
50
|
-
Returns:
|
|
51
|
-
Build outputs function.
|
|
52
|
-
"""
|
|
53
|
-
return {
|
|
54
|
-
}.get(t)
|
|
55
32
|
|
|
56
33
|
|
|
57
34
|
class ApqcMakeTcshPyOutputs(typing.NamedTuple):
|
|
58
35
|
"""
|
|
59
|
-
Output object returned when calling `
|
|
36
|
+
Output object returned when calling `ApqcMakeTcshPyParameters(...)`.
|
|
60
37
|
"""
|
|
61
38
|
root: OutputPathType
|
|
62
39
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -68,7 +45,7 @@ def apqc_make_tcsh_py_params(
|
|
|
68
45
|
review_style: str | None = None,
|
|
69
46
|
mot_grayplot_off: bool = False,
|
|
70
47
|
vstat_list: list[str] | None = None,
|
|
71
|
-
) ->
|
|
48
|
+
) -> ApqcMakeTcshPyParametersTagged:
|
|
72
49
|
"""
|
|
73
50
|
Build parameters.
|
|
74
51
|
|
|
@@ -90,7 +67,7 @@ def apqc_make_tcsh_py_params(
|
|
|
90
67
|
Parameter dictionary
|
|
91
68
|
"""
|
|
92
69
|
params = {
|
|
93
|
-
"
|
|
70
|
+
"@type": "afni/apqc_make_tcsh.py",
|
|
94
71
|
"uvar_json": uvar_json,
|
|
95
72
|
"subj_dir": subj_dir,
|
|
96
73
|
"mot_grayplot_off": mot_grayplot_off,
|
|
@@ -119,23 +96,23 @@ def apqc_make_tcsh_py_cargs(
|
|
|
119
96
|
cargs.append("apqc_make_tcsh.py")
|
|
120
97
|
cargs.extend([
|
|
121
98
|
"-uvar_json",
|
|
122
|
-
execution.input_file(params.get("uvar_json"))
|
|
99
|
+
execution.input_file(params.get("uvar_json", None))
|
|
123
100
|
])
|
|
124
101
|
cargs.extend([
|
|
125
102
|
"-subj_dir",
|
|
126
|
-
params.get("subj_dir")
|
|
103
|
+
params.get("subj_dir", None)
|
|
127
104
|
])
|
|
128
|
-
if params.get("review_style") is not None:
|
|
105
|
+
if params.get("review_style", None) is not None:
|
|
129
106
|
cargs.extend([
|
|
130
107
|
"-review_style",
|
|
131
|
-
params.get("review_style")
|
|
108
|
+
params.get("review_style", None)
|
|
132
109
|
])
|
|
133
|
-
if params.get("mot_grayplot_off"):
|
|
110
|
+
if params.get("mot_grayplot_off", False):
|
|
134
111
|
cargs.append("-mot_grayplot_off")
|
|
135
|
-
if params.get("vstat_list") is not None:
|
|
112
|
+
if params.get("vstat_list", None) is not None:
|
|
136
113
|
cargs.extend([
|
|
137
114
|
"-vstat_list",
|
|
138
|
-
*params.get("vstat_list")
|
|
115
|
+
*params.get("vstat_list", None)
|
|
139
116
|
])
|
|
140
117
|
return cargs
|
|
141
118
|
|
|
@@ -161,12 +138,14 @@ def apqc_make_tcsh_py_outputs(
|
|
|
161
138
|
|
|
162
139
|
def apqc_make_tcsh_py_execute(
|
|
163
140
|
params: ApqcMakeTcshPyParameters,
|
|
164
|
-
|
|
141
|
+
runner: Runner | None = None,
|
|
165
142
|
) -> ApqcMakeTcshPyOutputs:
|
|
166
143
|
"""
|
|
144
|
+
apqc_make_tcsh.py
|
|
145
|
+
|
|
167
146
|
This program creates the single subject (ss) HTML review script
|
|
168
|
-
'@ss_review_html' which generates images and text for the afni_proc.py
|
|
169
|
-
control (APQC) HTML.
|
|
147
|
+
'@ss_review_html' which generates images and text for the afni_proc.py
|
|
148
|
+
quality control (APQC) HTML.
|
|
170
149
|
|
|
171
150
|
Author: AFNI Developers
|
|
172
151
|
|
|
@@ -174,10 +153,12 @@ def apqc_make_tcsh_py_execute(
|
|
|
174
153
|
|
|
175
154
|
Args:
|
|
176
155
|
params: The parameters.
|
|
177
|
-
|
|
156
|
+
runner: Command runner.
|
|
178
157
|
Returns:
|
|
179
158
|
NamedTuple of outputs (described in `ApqcMakeTcshPyOutputs`).
|
|
180
159
|
"""
|
|
160
|
+
runner = runner or get_global_runner()
|
|
161
|
+
execution = runner.start_execution(APQC_MAKE_TCSH_PY_METADATA)
|
|
181
162
|
params = execution.params(params)
|
|
182
163
|
cargs = apqc_make_tcsh_py_cargs(params, execution)
|
|
183
164
|
ret = apqc_make_tcsh_py_outputs(params, execution)
|
|
@@ -194,9 +175,11 @@ def apqc_make_tcsh_py(
|
|
|
194
175
|
runner: Runner | None = None,
|
|
195
176
|
) -> ApqcMakeTcshPyOutputs:
|
|
196
177
|
"""
|
|
178
|
+
apqc_make_tcsh.py
|
|
179
|
+
|
|
197
180
|
This program creates the single subject (ss) HTML review script
|
|
198
|
-
'@ss_review_html' which generates images and text for the afni_proc.py
|
|
199
|
-
control (APQC) HTML.
|
|
181
|
+
'@ss_review_html' which generates images and text for the afni_proc.py
|
|
182
|
+
quality control (APQC) HTML.
|
|
200
183
|
|
|
201
184
|
Author: AFNI Developers
|
|
202
185
|
|
|
@@ -220,8 +203,6 @@ def apqc_make_tcsh_py(
|
|
|
220
203
|
Returns:
|
|
221
204
|
NamedTuple of outputs (described in `ApqcMakeTcshPyOutputs`).
|
|
222
205
|
"""
|
|
223
|
-
runner = runner or get_global_runner()
|
|
224
|
-
execution = runner.start_execution(APQC_MAKE_TCSH_PY_METADATA)
|
|
225
206
|
params = apqc_make_tcsh_py_params(
|
|
226
207
|
uvar_json=uvar_json,
|
|
227
208
|
subj_dir=subj_dir,
|
|
@@ -229,13 +210,13 @@ def apqc_make_tcsh_py(
|
|
|
229
210
|
mot_grayplot_off=mot_grayplot_off,
|
|
230
211
|
vstat_list=vstat_list,
|
|
231
212
|
)
|
|
232
|
-
return apqc_make_tcsh_py_execute(params,
|
|
213
|
+
return apqc_make_tcsh_py_execute(params, runner)
|
|
233
214
|
|
|
234
215
|
|
|
235
216
|
__all__ = [
|
|
236
217
|
"APQC_MAKE_TCSH_PY_METADATA",
|
|
237
218
|
"ApqcMakeTcshPyOutputs",
|
|
238
|
-
"ApqcMakeTcshPyParameters",
|
|
239
219
|
"apqc_make_tcsh_py",
|
|
220
|
+
"apqc_make_tcsh_py_execute",
|
|
240
221
|
"apqc_make_tcsh_py_params",
|
|
241
222
|
]
|