niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/imcutup.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 IMCUTUP_METADATA = Metadata(
-    id="b1adabd616594192ac521f6cca28633dc2132145.boutiques",
+    id="530ef006832ca6e8fa5ddd054e9840a9b18311a2.boutiques",
     name="imcutup",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,18 @@ IMCUTUP_METADATA = Metadata(
 
 
 ImcutupParameters = typing.TypedDict('ImcutupParameters', {
-    "__STYXTYPE__": typing.Literal["imcutup"],
+    "@type": typing.NotRequired[typing.Literal["afni/imcutup"]],
+    "prefix": typing.NotRequired[str | None],
+    "xynum": bool,
+    "yxnum": bool,
+    "xynum_format": bool,
+    "yxnum_format": bool,
+    "nx": int,
+    "ny": int,
+    "input_file": InputPathType,
+})
+ImcutupParametersTagged = typing.TypedDict('ImcutupParametersTagged', {
+    "@type": typing.Literal["afni/imcutup"],
     "prefix": typing.NotRequired[str | None],
     "xynum": bool,
     "yxnum": bool,
@@ -24,48 +35,14 @@ ImcutupParameters = typing.TypedDict('ImcutupParameters', {
     "ny": int,
     "input_file": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "imcutup": imcutup_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "imcutup": imcutup_outputs,
-    }.get(t)
 
 
 class ImcutupOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `imcutup(...)`.
+    Output object returned when calling `ImcutupParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
-    output_files: OutputPathType | None
-    """Output smaller images with the specified prefix numbering format."""
 
 
 def imcutup_params(
@@ -77,7 +54,7 @@ def imcutup_params(
     yxnum: bool = False,
     xynum_format: bool = False,
     yxnum_format: bool = False,
-) -> ImcutupParameters:
+) -> ImcutupParametersTagged:
     """
     Build parameters.
     
@@ -94,7 +71,7 @@ def imcutup_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "imcutup",
+        "@type": "afni/imcutup",
         "xynum": xynum,
         "yxnum": yxnum,
         "xynum_format": xynum_format,
@@ -123,22 +100,22 @@ def imcutup_cargs(
     """
     cargs = []
     cargs.append("imcutup")
-    if params.get("prefix") is not None:
+    if params.get("prefix", None) is not None:
         cargs.extend([
             "-prefix",
-            params.get("prefix")
+            params.get("prefix", None)
         ])
-    if params.get("xynum"):
+    if params.get("xynum", False):
         cargs.append("-xynum")
-    if params.get("yxnum"):
+    if params.get("yxnum", False):
         cargs.append("-yxnum")
-    if params.get("xynum_format"):
+    if params.get("xynum_format", False):
         cargs.append("-x.ynum")
-    if params.get("yxnum_format"):
+    if params.get("yxnum_format", False):
         cargs.append("-y.xnum")
-    cargs.append(str(params.get("nx")))
-    cargs.append(str(params.get("ny")))
-    cargs.append(execution.input_file(params.get("input_file")))
+    cargs.append(str(params.get("nx", None)))
+    cargs.append(str(params.get("ny", None)))
+    cargs.append(execution.input_file(params.get("input_file", None)))
     return cargs
 
 
@@ -157,16 +134,17 @@ def imcutup_outputs(
     """
     ret = ImcutupOutputs(
         root=execution.output_file("."),
-        output_files=execution.output_file(params.get("prefix") + "*") if (params.get("prefix") is not None) else None,
     )
     return ret
 
 
 def imcutup_execute(
     params: ImcutupParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> ImcutupOutputs:
     """
+    imcutup
+    
     Breaks up larger images into smaller image files of user-defined size.
     
     Author: AFNI Developers
@@ -175,10 +153,12 @@ def imcutup_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `ImcutupOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(IMCUTUP_METADATA)
     params = execution.params(params)
     cargs = imcutup_cargs(params, execution)
     ret = imcutup_outputs(params, execution)
@@ -198,6 +178,8 @@ def imcutup(
     runner: Runner | None = None,
 ) -> ImcutupOutputs:
     """
+    imcutup
+    
     Breaks up larger images into smaller image files of user-defined size.
     
     Author: AFNI Developers
@@ -217,8 +199,6 @@ def imcutup(
     Returns:
         NamedTuple of outputs (described in `ImcutupOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(IMCUTUP_METADATA)
     params = imcutup_params(
         prefix=prefix,
         xynum=xynum,
@@ -229,13 +209,13 @@ def imcutup(
         ny=ny,
         input_file=input_file,
     )
-    return imcutup_execute(params, execution)
+    return imcutup_execute(params, runner)
 
 
 __all__ = [
     "IMCUTUP_METADATA",
     "ImcutupOutputs",
-    "ImcutupParameters",
     "imcutup",
+    "imcutup_execute",
     "imcutup_params",
 ]

niwrap_afni/afni/imdump.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 IMDUMP_METADATA = Metadata(
-    id="459004bda38f190bf54b7b93ee1f69c9a1440cdf.boutiques",
+    id="132ebf01ecdda91027e6ffa02b249f1cca08047f.boutiques",
     name="imdump",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ IMDUMP_METADATA = Metadata(
 
 
 ImdumpParameters = typing.TypedDict('ImdumpParameters', {
-    "__STYXTYPE__": typing.Literal["imdump"],
+    "@type": typing.NotRequired[typing.Literal["afni/imdump"]],
+    "input_image": InputPathType,
+})
+ImdumpParametersTagged = typing.TypedDict('ImdumpParametersTagged', {
+    "@type": typing.Literal["afni/imdump"],
     "input_image": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "imdump": imdump_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "imdump": imdump_outputs,
-    }.get(t)
 
 
 class ImdumpOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `imdump(...)`.
+    Output object returned when calling `ImdumpParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -64,7 +36,7 @@ class ImdumpOutputs(typing.NamedTuple):
 
 def imdump_params(
     input_image: InputPathType,
-) -> ImdumpParameters:
+) -> ImdumpParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +46,7 @@ def imdump_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "imdump",
+        "@type": "afni/imdump",
         "input_image": input_image,
     }
     return params
@@ -95,7 +67,7 @@ def imdump_cargs(
     """
     cargs = []
     cargs.append("imdump")
-    cargs.append(execution.input_file(params.get("input_image")))
+    cargs.append(execution.input_file(params.get("input_image", None)))
     return cargs
 
 
@@ -121,9 +93,11 @@ def imdump_outputs(
 
 def imdump_execute(
     params: ImdumpParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> ImdumpOutputs:
     """
+    imdump
+    
     Prints out nonzero pixels in an image.
     
     Author: AFNI Developers
@@ -132,10 +106,12 @@ def imdump_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `ImdumpOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(IMDUMP_METADATA)
     params = execution.params(params)
     cargs = imdump_cargs(params, execution)
     ret = imdump_outputs(params, execution)
@@ -148,6 +124,8 @@ def imdump(
     runner: Runner | None = None,
 ) -> ImdumpOutputs:
     """
+    imdump
+    
     Prints out nonzero pixels in an image.
     
     Author: AFNI Developers
@@ -160,18 +138,16 @@ def imdump(
     Returns:
         NamedTuple of outputs (described in `ImdumpOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(IMDUMP_METADATA)
     params = imdump_params(
         input_image=input_image,
     )
-    return imdump_execute(params, execution)
+    return imdump_execute(params, runner)
 
 
 __all__ = [
     "IMDUMP_METADATA",
     "ImdumpOutputs",
-    "ImdumpParameters",
     "imdump",
+    "imdump_execute",
     "imdump_params",
 ]

niwrap_afni/afni/immask.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 IMMASK_METADATA = Metadata(
-    id="7997bb8c1d255c2ebdb468789198032af458e485.boutiques",
+    id="57311f15962ed9c7aa9e6d43abb977925968463e.boutiques",
     name="immask",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,50 +14,26 @@ IMMASK_METADATA = Metadata(
 
 
 ImmaskParameters = typing.TypedDict('ImmaskParameters', {
-    "__STYXTYPE__": typing.Literal["immask"],
+    "@type": typing.NotRequired[typing.Literal["afni/immask"]],
+    "threshold": typing.NotRequired[float | None],
+    "mask_image": typing.NotRequired[InputPathType | None],
+    "positive_only": bool,
+    "input_image": InputPathType,
+    "output_image": str,
+})
+ImmaskParametersTagged = typing.TypedDict('ImmaskParametersTagged', {
+    "@type": typing.Literal["afni/immask"],
     "threshold": typing.NotRequired[float | None],
     "mask_image": typing.NotRequired[InputPathType | None],
     "positive_only": bool,
     "input_image": InputPathType,
     "output_image": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "immask": immask_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "immask": immask_outputs,
-    }.get(t)
 
 
 class ImmaskOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `immask(...)`.
+    Output object returned when calling `ImmaskParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -71,7 +47,7 @@ def immask_params(
     threshold: float | None = None,
     mask_image: InputPathType | None = None,
     positive_only: bool = False,
-) -> ImmaskParameters:
+) -> ImmaskParametersTagged:
     """
     Build parameters.
     
@@ -87,7 +63,7 @@ def immask_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "immask",
+        "@type": "afni/immask",
         "positive_only": positive_only,
         "input_image": input_image,
         "output_image": output_image,
@@ -114,20 +90,20 @@ def immask_cargs(
     """
     cargs = []
     cargs.append("immask")
-    if params.get("threshold") is not None:
+    if params.get("threshold", None) is not None:
         cargs.extend([
             "-thresh",
-            str(params.get("threshold"))
+            str(params.get("threshold", None))
         ])
-    if params.get("mask_image") is not None:
+    if params.get("mask_image", None) is not None:
         cargs.extend([
             "-mask",
-            execution.input_file(params.get("mask_image"))
+            execution.input_file(params.get("mask_image", None))
         ])
-    if params.get("positive_only"):
+    if params.get("positive_only", False):
         cargs.append("-pos")
-    cargs.append(execution.input_file(params.get("input_image")))
-    cargs.append(params.get("output_image"))
+    cargs.append(execution.input_file(params.get("input_image", None)))
+    cargs.append(params.get("output_image", None))
     return cargs
 
 
@@ -146,17 +122,20 @@ def immask_outputs(
     """
     ret = ImmaskOutputs(
         root=execution.output_file("."),
-        output_file=execution.output_file(params.get("output_image")),
+        output_file=execution.output_file(params.get("output_image", None)),
     )
     return ret
 
 
 def immask_execute(
     params: ImmaskParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> ImmaskOutputs:
     """
-    Masks the input image based on specified criteria and produces the output image.
+    immask
+    
+    Masks the input image based on specified criteria and produces the output
+    image.
     
     Author: AFNI Developers
     
@@ -164,10 +143,12 @@ def immask_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `ImmaskOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(IMMASK_METADATA)
     params = execution.params(params)
     cargs = immask_cargs(params, execution)
     ret = immask_outputs(params, execution)
@@ -184,7 +165,10 @@ def immask(
     runner: Runner | None = None,
 ) -> ImmaskOutputs:
     """
-    Masks the input image based on specified criteria and produces the output image.
+    immask
+    
+    Masks the input image based on specified criteria and produces the output
+    image.
     
     Author: AFNI Developers
     
@@ -202,8 +186,6 @@ def immask(
     Returns:
         NamedTuple of outputs (described in `ImmaskOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(IMMASK_METADATA)
     params = immask_params(
         threshold=threshold,
         mask_image=mask_image,
@@ -211,13 +193,13 @@ def immask(
         input_image=input_image,
         output_image=output_image,
     )
-    return immask_execute(params, execution)
+    return immask_execute(params, runner)
 
 
 __all__ = [
     "IMMASK_METADATA",
     "ImmaskOutputs",
-    "ImmaskParameters",
     "immask",
+    "immask_execute",
     "immask_params",
 ]