niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/get_afni_model_prf.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 GET_AFNI_MODEL_PRF_METADATA = Metadata(
-    id="cb7d3b9ba2d4dd13509959e5b0788f67b7ac9d2f.boutiques",
+    id="ebc3a97876ea91513851294dd4aef0b244cab5d4.boutiques",
     name="get_afni_model_PRF",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,48 +14,24 @@ GET_AFNI_MODEL_PRF_METADATA = Metadata(
 
 
 GetAfniModelPrfParameters = typing.TypedDict('GetAfniModelPrfParameters', {
-    "__STYXTYPE__": typing.Literal["get_afni_model_PRF"],
+    "@type": typing.NotRequired[typing.Literal["afni/get_afni_model_PRF"]],
+    "amplitude": float,
+    "x_coord": float,
+    "y_coord": float,
+    "sigma": float,
+})
+GetAfniModelPrfParametersTagged = typing.TypedDict('GetAfniModelPrfParametersTagged', {
+    "@type": typing.Literal["afni/get_afni_model_PRF"],
     "amplitude": float,
     "x_coord": float,
     "y_coord": float,
     "sigma": float,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "get_afni_model_PRF": get_afni_model_prf_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class GetAfniModelPrfOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `get_afni_model_prf(...)`.
+    Output object returned when calling `GetAfniModelPrfParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -66,7 +42,7 @@ def get_afni_model_prf_params(
     x_coord: float,
     y_coord: float,
     sigma: float,
-) -> GetAfniModelPrfParameters:
+) -> GetAfniModelPrfParametersTagged:
     """
     Build parameters.
     
@@ -79,7 +55,7 @@ def get_afni_model_prf_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "get_afni_model_PRF",
+        "@type": "afni/get_afni_model_PRF",
         "amplitude": amplitude,
         "x_coord": x_coord,
         "y_coord": y_coord,
@@ -103,10 +79,10 @@ def get_afni_model_prf_cargs(
     """
     cargs = []
     cargs.append("get_afni_model_PRF")
-    cargs.append(str(params.get("amplitude")))
-    cargs.append(str(params.get("x_coord")))
-    cargs.append(str(params.get("y_coord")))
-    cargs.append(str(params.get("sigma")))
+    cargs.append(str(params.get("amplitude", None)))
+    cargs.append(str(params.get("x_coord", None)))
+    cargs.append(str(params.get("y_coord", None)))
+    cargs.append(str(params.get("sigma", None)))
     return cargs
 
 
@@ -131,9 +107,11 @@ def get_afni_model_prf_outputs(
 
 def get_afni_model_prf_execute(
     params: GetAfniModelPrfParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> GetAfniModelPrfOutputs:
     """
+    get_afni_model_PRF
+    
     A tool to get AFNI model parameters assuming a PRF framework.
     
     Author: AFNI Developers
@@ -142,10 +120,12 @@ def get_afni_model_prf_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrfOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GET_AFNI_MODEL_PRF_METADATA)
     params = execution.params(params)
     cargs = get_afni_model_prf_cargs(params, execution)
     ret = get_afni_model_prf_outputs(params, execution)
@@ -161,6 +141,8 @@ def get_afni_model_prf(
     runner: Runner | None = None,
 ) -> GetAfniModelPrfOutputs:
     """
+    get_afni_model_PRF
+    
     A tool to get AFNI model parameters assuming a PRF framework.
     
     Author: AFNI Developers
@@ -176,21 +158,19 @@ def get_afni_model_prf(
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrfOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(GET_AFNI_MODEL_PRF_METADATA)
     params = get_afni_model_prf_params(
         amplitude=amplitude,
         x_coord=x_coord,
         y_coord=y_coord,
         sigma=sigma,
     )
-    return get_afni_model_prf_execute(params, execution)
+    return get_afni_model_prf_execute(params, runner)
 
 
 __all__ = [
     "GET_AFNI_MODEL_PRF_METADATA",
     "GetAfniModelPrfOutputs",
-    "GetAfniModelPrfParameters",
     "get_afni_model_prf",
+    "get_afni_model_prf_execute",
     "get_afni_model_prf_params",
 ]

niwrap_afni/afni/get_afni_model_prf_6.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 GET_AFNI_MODEL_PRF_6_METADATA = Metadata(
-    id="a1644a25504c74d6961d86251212dfc9c7f6fb99.boutiques",
+    id="92e5af15828b4d5e26252f0a600e5dab3c65fdb7.boutiques",
     name="get_afni_model_PRF_6",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,17 @@ GET_AFNI_MODEL_PRF_6_METADATA = Metadata(
 
 
 GetAfniModelPrf6Parameters = typing.TypedDict('GetAfniModelPrf6Parameters', {
-    "__STYXTYPE__": typing.Literal["get_afni_model_PRF_6"],
+    "@type": typing.NotRequired[typing.Literal["afni/get_afni_model_PRF_6"]],
+    "NT": float,
+    "AMP": float,
+    "X": float,
+    "Y": float,
+    "SIGMA": float,
+    "SIGRAT": float,
+    "THETA": float,
+})
+GetAfniModelPrf6ParametersTagged = typing.TypedDict('GetAfniModelPrf6ParametersTagged', {
+    "@type": typing.Literal["afni/get_afni_model_PRF_6"],
     "NT": float,
     "AMP": float,
     "X": float,
@@ -23,42 +33,11 @@ GetAfniModelPrf6Parameters = typing.TypedDict('GetAfniModelPrf6Parameters', {
     "SIGRAT": float,
     "THETA": float,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "get_afni_model_PRF_6": get_afni_model_prf_6_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class GetAfniModelPrf6Outputs(typing.NamedTuple):
     """
-    Output object returned when calling `get_afni_model_prf_6(...)`.
+    Output object returned when calling `GetAfniModelPrf6Parameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -72,7 +51,7 @@ def get_afni_model_prf_6_params(
     sigma: float,
     sigrat: float,
     theta: float,
-) -> GetAfniModelPrf6Parameters:
+) -> GetAfniModelPrf6ParametersTagged:
     """
     Build parameters.
     
@@ -89,7 +68,7 @@ def get_afni_model_prf_6_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "get_afni_model_PRF_6",
+        "@type": "afni/get_afni_model_PRF_6",
         "NT": nt_,
         "AMP": amp,
         "X": x,
@@ -116,13 +95,13 @@ def get_afni_model_prf_6_cargs(
     """
     cargs = []
     cargs.append("get_afni_model_PRF_6")
-    cargs.append(str(params.get("NT")))
-    cargs.append(str(params.get("AMP")))
-    cargs.append(str(params.get("X")))
-    cargs.append(str(params.get("Y")))
-    cargs.append(str(params.get("SIGMA")))
-    cargs.append(str(params.get("SIGRAT")))
-    cargs.append(str(params.get("THETA")))
+    cargs.append(str(params.get("NT", None)))
+    cargs.append(str(params.get("AMP", None)))
+    cargs.append(str(params.get("X", None)))
+    cargs.append(str(params.get("Y", None)))
+    cargs.append(str(params.get("SIGMA", None)))
+    cargs.append(str(params.get("SIGRAT", None)))
+    cargs.append(str(params.get("THETA", None)))
     return cargs
 
 
@@ -147,9 +126,11 @@ def get_afni_model_prf_6_outputs(
 
 def get_afni_model_prf_6_execute(
     params: GetAfniModelPrf6Parameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> GetAfniModelPrf6Outputs:
     """
+    get_afni_model_PRF_6
+    
     A command to invoke AFNI's population receptive field (pRF) model.
     
     Author: AFNI Developers
@@ -158,10 +139,12 @@ def get_afni_model_prf_6_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrf6Outputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_METADATA)
     params = execution.params(params)
     cargs = get_afni_model_prf_6_cargs(params, execution)
     ret = get_afni_model_prf_6_outputs(params, execution)
@@ -180,6 +163,8 @@ def get_afni_model_prf_6(
     runner: Runner | None = None,
 ) -> GetAfniModelPrf6Outputs:
     """
+    get_afni_model_PRF_6
+    
     A command to invoke AFNI's population receptive field (pRF) model.
     
     Author: AFNI Developers
@@ -199,8 +184,6 @@ def get_afni_model_prf_6(
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrf6Outputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_METADATA)
     params = get_afni_model_prf_6_params(
         nt_=nt_,
         amp=amp,
@@ -210,13 +193,13 @@ def get_afni_model_prf_6(
         sigrat=sigrat,
         theta=theta,
     )
-    return get_afni_model_prf_6_execute(params, execution)
+    return get_afni_model_prf_6_execute(params, runner)
 
 
 __all__ = [
     "GET_AFNI_MODEL_PRF_6_METADATA",
     "GetAfniModelPrf6Outputs",
-    "GetAfniModelPrf6Parameters",
     "get_afni_model_prf_6",
+    "get_afni_model_prf_6_execute",
     "get_afni_model_prf_6_params",
 ]

niwrap_afni/afni/get_afni_model_prf_6_bad.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 GET_AFNI_MODEL_PRF_6_BAD_METADATA = Metadata(
-    id="f7614b8ced72773ab9bfd46ff569ff9a092b84e3.boutiques",
+    id="333b33932df510597bb63337686868fddcc93a33.boutiques",
     name="get_afni_model_PRF_6_BAD",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ GET_AFNI_MODEL_PRF_6_BAD_METADATA = Metadata(
 
 
 GetAfniModelPrf6BadParameters = typing.TypedDict('GetAfniModelPrf6BadParameters', {
-    "__STYXTYPE__": typing.Literal["get_afni_model_PRF_6_BAD"],
+    "@type": typing.NotRequired[typing.Literal["afni/get_afni_model_PRF_6_BAD"]],
+    "amplitude": float,
+    "x_coord": float,
+    "y_coord": float,
+    "sigma": float,
+    "sigrat": float,
+    "theta": float,
+})
+GetAfniModelPrf6BadParametersTagged = typing.TypedDict('GetAfniModelPrf6BadParametersTagged', {
+    "@type": typing.Literal["afni/get_afni_model_PRF_6_BAD"],
     "amplitude": float,
     "x_coord": float,
     "y_coord": float,
@@ -22,42 +31,11 @@ GetAfniModelPrf6BadParameters = typing.TypedDict('GetAfniModelPrf6BadParameters'
     "sigrat": float,
     "theta": float,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "get_afni_model_PRF_6_BAD": get_afni_model_prf_6_bad_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class GetAfniModelPrf6BadOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `get_afni_model_prf_6_bad(...)`.
+    Output object returned when calling `GetAfniModelPrf6BadParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -70,7 +48,7 @@ def get_afni_model_prf_6_bad_params(
     sigma: float,
     sigrat: float,
     theta: float,
-) -> GetAfniModelPrf6BadParameters:
+) -> GetAfniModelPrf6BadParametersTagged:
     """
     Build parameters.
     
@@ -85,7 +63,7 @@ def get_afni_model_prf_6_bad_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "get_afni_model_PRF_6_BAD",
+        "@type": "afni/get_afni_model_PRF_6_BAD",
         "amplitude": amplitude,
         "x_coord": x_coord,
         "y_coord": y_coord,
@@ -111,12 +89,12 @@ def get_afni_model_prf_6_bad_cargs(
     """
     cargs = []
     cargs.append("get_afni_model_PRF_6_BAD")
-    cargs.append(str(params.get("amplitude")))
-    cargs.append(str(params.get("x_coord")))
-    cargs.append(str(params.get("y_coord")))
-    cargs.append(str(params.get("sigma")))
-    cargs.append(str(params.get("sigrat")))
-    cargs.append(str(params.get("theta")))
+    cargs.append(str(params.get("amplitude", None)))
+    cargs.append(str(params.get("x_coord", None)))
+    cargs.append(str(params.get("y_coord", None)))
+    cargs.append(str(params.get("sigma", None)))
+    cargs.append(str(params.get("sigrat", None)))
+    cargs.append(str(params.get("theta", None)))
     return cargs
 
 
@@ -141,9 +119,11 @@ def get_afni_model_prf_6_bad_outputs(
 
 def get_afni_model_prf_6_bad_execute(
     params: GetAfniModelPrf6BadParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> GetAfniModelPrf6BadOutputs:
     """
+    get_afni_model_PRF_6_BAD
+    
     Command line tool for obtaining AFNI pRF model.
     
     Author: AFNI Developers
@@ -152,10 +132,12 @@ def get_afni_model_prf_6_bad_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrf6BadOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_BAD_METADATA)
     params = execution.params(params)
     cargs = get_afni_model_prf_6_bad_cargs(params, execution)
     ret = get_afni_model_prf_6_bad_outputs(params, execution)
@@ -173,6 +155,8 @@ def get_afni_model_prf_6_bad(
     runner: Runner | None = None,
 ) -> GetAfniModelPrf6BadOutputs:
     """
+    get_afni_model_PRF_6_BAD
+    
     Command line tool for obtaining AFNI pRF model.
     
     Author: AFNI Developers
@@ -190,8 +174,6 @@ def get_afni_model_prf_6_bad(
     Returns:
         NamedTuple of outputs (described in `GetAfniModelPrf6BadOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(GET_AFNI_MODEL_PRF_6_BAD_METADATA)
     params = get_afni_model_prf_6_bad_params(
         amplitude=amplitude,
         x_coord=x_coord,
@@ -200,13 +182,13 @@ def get_afni_model_prf_6_bad(
         sigrat=sigrat,
         theta=theta,
     )
-    return get_afni_model_prf_6_bad_execute(params, execution)
+    return get_afni_model_prf_6_bad_execute(params, runner)
 
 
 __all__ = [
     "GET_AFNI_MODEL_PRF_6_BAD_METADATA",
     "GetAfniModelPrf6BadOutputs",
-    "GetAfniModelPrf6BadParameters",
     "get_afni_model_prf_6_bad",
+    "get_afni_model_prf_6_bad_execute",
     "get_afni_model_prf_6_bad_params",
 ]