niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/fat_proc_imit2w_from_t1w.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 FAT_PROC_IMIT2W_FROM_T1W_METADATA = Metadata(
-    id="a1967c97adef3727f91855cbde7a0827f8a35dc7.boutiques",
+    id="6e4b31f9dba6fea968d8d0b43da6d2ef2dfdf294.boutiques",
     name="fat_proc_imit2w_from_t1w",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,18 @@ FAT_PROC_IMIT2W_FROM_T1W_METADATA = Metadata(
 
 
 FatProcImit2wFromT1wParameters = typing.TypedDict('FatProcImit2wFromT1wParameters', {
-    "__STYXTYPE__": typing.Literal["fat_proc_imit2w_from_t1w"],
+    "@type": typing.NotRequired[typing.Literal["afni/fat_proc_imit2w_from_t1w"]],
+    "t1_file": InputPathType,
+    "prefix": str,
+    "workdir": typing.NotRequired[str | None],
+    "mask": typing.NotRequired[InputPathType | None],
+    "ss_blur_fwhm": typing.NotRequired[float | None],
+    "no_clean": bool,
+    "no_qc_view": bool,
+    "qc_prefix": typing.NotRequired[str | None],
+})
+FatProcImit2wFromT1wParametersTagged = typing.TypedDict('FatProcImit2wFromT1wParametersTagged', {
+    "@type": typing.Literal["afni/fat_proc_imit2w_from_t1w"],
     "t1_file": InputPathType,
     "prefix": str,
     "workdir": typing.NotRequired[str | None],
@@ -24,43 +35,11 @@ FatProcImit2wFromT1wParameters = typing.TypedDict('FatProcImit2wFromT1wParameter
     "no_qc_view": bool,
     "qc_prefix": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "fat_proc_imit2w_from_t1w": fat_proc_imit2w_from_t1w_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "fat_proc_imit2w_from_t1w": fat_proc_imit2w_from_t1w_outputs,
-    }.get(t)
 
 
 class FatProcImit2wFromT1wOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `fat_proc_imit2w_from_t1w(...)`.
+    Output object returned when calling `FatProcImit2wFromT1wParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -71,9 +50,6 @@ class FatProcImit2wFromT1wOutputs(typing.NamedTuple):
     noise outside the brain"""
     skull_stripped_t1w: OutputPathType
     """Skull-stripped version of the T1w volume"""
-    qc_images: OutputPathType
-    """QC images of the skull-stripped T1w volume and the final imitation-T2w
-    volume"""
 
 
 def fat_proc_imit2w_from_t1w_params(
@@ -85,7 +61,7 @@ def fat_proc_imit2w_from_t1w_params(
     no_clean: bool = False,
     no_qc_view: bool = False,
     qc_prefix: str | None = None,
-) -> FatProcImit2wFromT1wParameters:
+) -> FatProcImit2wFromT1wParametersTagged:
     """
     Build parameters.
     
@@ -108,7 +84,7 @@ def fat_proc_imit2w_from_t1w_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "fat_proc_imit2w_from_t1w",
+        "@type": "afni/fat_proc_imit2w_from_t1w",
         "t1_file": t1_file,
         "prefix": prefix,
         "no_clean": no_clean,
@@ -142,35 +118,35 @@ def fat_proc_imit2w_from_t1w_cargs(
     cargs.append("fat_proc_imit2w_from_t1w")
     cargs.extend([
         "-inset",
-        execution.input_file(params.get("t1_file"))
+        execution.input_file(params.get("t1_file", None))
     ])
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
-    if params.get("workdir") is not None:
+    if params.get("workdir", None) is not None:
         cargs.extend([
             "-workdir",
-            params.get("workdir")
+            params.get("workdir", None)
         ])
-    if params.get("mask") is not None:
+    if params.get("mask", None) is not None:
         cargs.extend([
             "-mask",
-            execution.input_file(params.get("mask"))
+            execution.input_file(params.get("mask", None))
         ])
-    if params.get("ss_blur_fwhm") is not None:
+    if params.get("ss_blur_fwhm", None) is not None:
         cargs.extend([
             "-ss_blur_fwhm",
-            str(params.get("ss_blur_fwhm"))
+            str(params.get("ss_blur_fwhm", None))
         ])
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
-    if params.get("no_qc_view"):
+    if params.get("no_qc_view", False):
         cargs.append("-no_qc_view")
-    if params.get("qc_prefix") is not None:
+    if params.get("qc_prefix", None) is not None:
         cargs.extend([
             "-qc_prefix",
-            params.get("qc_prefix")
+            params.get("qc_prefix", None)
         ])
     return cargs
 
@@ -190,19 +166,20 @@ def fat_proc_imit2w_from_t1w_outputs(
     """
     ret = FatProcImit2wFromT1wOutputs(
         root=execution.output_file("."),
-        t2w_contrast_volume=execution.output_file(params.get("prefix") + ".nii.gz"),
-        cleaned_t1w_volume=execution.output_file(params.get("prefix") + "_orig.nii.gz"),
-        skull_stripped_t1w=execution.output_file(params.get("prefix") + "_orig_ss.nii.gz"),
-        qc_images=execution.output_file(params.get("prefix") + "_qc*.nii.gz"),
+        t2w_contrast_volume=execution.output_file(params.get("prefix", None) + ".nii.gz"),
+        cleaned_t1w_volume=execution.output_file(params.get("prefix", None) + "_orig.nii.gz"),
+        skull_stripped_t1w=execution.output_file(params.get("prefix", None) + "_orig_ss.nii.gz"),
     )
     return ret
 
 
 def fat_proc_imit2w_from_t1w_execute(
     params: FatProcImit2wFromT1wParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> FatProcImit2wFromT1wOutputs:
     """
+    fat_proc_imit2w_from_t1w
+    
     Process T1w anatomical images to generate an imitation T2w-contrast image.
     
     Author: AFNI Developers
@@ -211,10 +188,12 @@ def fat_proc_imit2w_from_t1w_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `FatProcImit2wFromT1wOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(FAT_PROC_IMIT2W_FROM_T1W_METADATA)
     params = execution.params(params)
     cargs = fat_proc_imit2w_from_t1w_cargs(params, execution)
     ret = fat_proc_imit2w_from_t1w_outputs(params, execution)
@@ -234,6 +213,8 @@ def fat_proc_imit2w_from_t1w(
     runner: Runner | None = None,
 ) -> FatProcImit2wFromT1wOutputs:
     """
+    fat_proc_imit2w_from_t1w
+    
     Process T1w anatomical images to generate an imitation T2w-contrast image.
     
     Author: AFNI Developers
@@ -259,8 +240,6 @@ def fat_proc_imit2w_from_t1w(
     Returns:
         NamedTuple of outputs (described in `FatProcImit2wFromT1wOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(FAT_PROC_IMIT2W_FROM_T1W_METADATA)
     params = fat_proc_imit2w_from_t1w_params(
         t1_file=t1_file,
         prefix=prefix,
@@ -271,13 +250,13 @@ def fat_proc_imit2w_from_t1w(
         no_qc_view=no_qc_view,
         qc_prefix=qc_prefix,
     )
-    return fat_proc_imit2w_from_t1w_execute(params, execution)
+    return fat_proc_imit2w_from_t1w_execute(params, runner)
 
 
 __all__ = [
     "FAT_PROC_IMIT2W_FROM_T1W_METADATA",
     "FatProcImit2wFromT1wOutputs",
-    "FatProcImit2wFromT1wParameters",
     "fat_proc_imit2w_from_t1w",
+    "fat_proc_imit2w_from_t1w_execute",
     "fat_proc_imit2w_from_t1w_params",
 ]

niwrap_afni/afni/fat_proc_map_to_dti.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 FAT_PROC_MAP_TO_DTI_METADATA = Metadata(
-    id="2071c7c40db2fbca86d8b9d2a81d43349c721ca3.boutiques",
+    id="395822a397ddad40ad7686204af5516f6ff6b62a.boutiques",
     name="fat_proc_map_to_dti",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,22 @@ FAT_PROC_MAP_TO_DTI_METADATA = Metadata(
 
 
 FatProcMapToDtiParameters = typing.TypedDict('FatProcMapToDtiParameters', {
-    "__STYXTYPE__": typing.Literal["fat_proc_map_to_dti"],
+    "@type": typing.NotRequired[typing.Literal["afni/fat_proc_map_to_dti"]],
+    "source": InputPathType,
+    "base": InputPathType,
+    "prefix": str,
+    "followers_nn": typing.NotRequired[list[InputPathType] | None],
+    "followers_wsinc5": typing.NotRequired[list[InputPathType] | None],
+    "followers_surf": typing.NotRequired[list[InputPathType] | None],
+    "followers_ndset": typing.NotRequired[list[InputPathType] | None],
+    "followers_spec": typing.NotRequired[list[InputPathType] | None],
+    "matrix": typing.NotRequired[InputPathType | None],
+    "workdir": typing.NotRequired[str | None],
+    "no_cmd_out": bool,
+    "no_clean": bool,
+})
+FatProcMapToDtiParametersTagged = typing.TypedDict('FatProcMapToDtiParametersTagged', {
+    "@type": typing.Literal["afni/fat_proc_map_to_dti"],
     "source": InputPathType,
     "base": InputPathType,
     "prefix": str,
@@ -28,42 +43,11 @@ FatProcMapToDtiParameters = typing.TypedDict('FatProcMapToDtiParameters', {
     "no_cmd_out": bool,
     "no_clean": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "fat_proc_map_to_dti": fat_proc_map_to_dti_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class FatProcMapToDtiOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `fat_proc_map_to_dti(...)`.
+    Output object returned when calling `FatProcMapToDtiParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -82,7 +66,7 @@ def fat_proc_map_to_dti_params(
     workdir: str | None = None,
     no_cmd_out: bool = False,
     no_clean: bool = False,
-) -> FatProcMapToDtiParameters:
+) -> FatProcMapToDtiParametersTagged:
     """
     Build parameters.
     
@@ -103,7 +87,7 @@ def fat_proc_map_to_dti_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "fat_proc_map_to_dti",
+        "@type": "afni/fat_proc_map_to_dti",
         "source": source,
         "base": base,
         "prefix": prefix,
@@ -144,54 +128,54 @@ def fat_proc_map_to_dti_cargs(
     cargs.append("fat_proc_map_to_dti")
     cargs.extend([
         "-source",
-        execution.input_file(params.get("source"))
+        execution.input_file(params.get("source", None))
     ])
     cargs.extend([
         "-base",
-        execution.input_file(params.get("base"))
+        execution.input_file(params.get("base", None))
     ])
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
-    if params.get("followers_nn") is not None:
+    if params.get("followers_nn", None) is not None:
         cargs.extend([
             "-followers_NN",
-            *[execution.input_file(f) for f in params.get("followers_nn")]
+            *[execution.input_file(f) for f in params.get("followers_nn", None)]
         ])
-    if params.get("followers_wsinc5") is not None:
+    if params.get("followers_wsinc5", None) is not None:
         cargs.extend([
             "-followers_wsinc5",
-            *[execution.input_file(f) for f in params.get("followers_wsinc5")]
+            *[execution.input_file(f) for f in params.get("followers_wsinc5", None)]
         ])
-    if params.get("followers_surf") is not None:
+    if params.get("followers_surf", None) is not None:
         cargs.extend([
             "-followers_surf",
-            *[execution.input_file(f) for f in params.get("followers_surf")]
+            *[execution.input_file(f) for f in params.get("followers_surf", None)]
         ])
-    if params.get("followers_ndset") is not None:
+    if params.get("followers_ndset", None) is not None:
         cargs.extend([
             "-followers_ndset",
-            *[execution.input_file(f) for f in params.get("followers_ndset")]
+            *[execution.input_file(f) for f in params.get("followers_ndset", None)]
         ])
-    if params.get("followers_spec") is not None:
+    if params.get("followers_spec", None) is not None:
         cargs.extend([
             "-followers_spec",
-            *[execution.input_file(f) for f in params.get("followers_spec")]
+            *[execution.input_file(f) for f in params.get("followers_spec", None)]
         ])
-    if params.get("matrix") is not None:
+    if params.get("matrix", None) is not None:
         cargs.extend([
             "-matrix",
-            execution.input_file(params.get("matrix"))
+            execution.input_file(params.get("matrix", None))
         ])
-    if params.get("workdir") is not None:
+    if params.get("workdir", None) is not None:
         cargs.extend([
             "-workdir",
-            params.get("workdir")
+            params.get("workdir", None)
         ])
-    if params.get("no_cmd_out"):
+    if params.get("no_cmd_out", False):
         cargs.append("-no_cmd_out")
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
     return cargs
 
@@ -217,11 +201,13 @@ def fat_proc_map_to_dti_outputs(
 
 def fat_proc_map_to_dti_execute(
     params: FatProcMapToDtiParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> FatProcMapToDtiOutputs:
     """
-    A program for mapping data sets into DWI space, suitable for aligning anatomical
-    ROI maps or EPI data to a DWI reference volume.
+    fat_proc_map_to_dti
+    
+    A program for mapping data sets into DWI space, suitable for aligning
+    anatomical ROI maps or EPI data to a DWI reference volume.
     
     Author: AFNI Developers
     
@@ -229,10 +215,12 @@ def fat_proc_map_to_dti_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `FatProcMapToDtiOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(FAT_PROC_MAP_TO_DTI_METADATA)
     params = execution.params(params)
     cargs = fat_proc_map_to_dti_cargs(params, execution)
     ret = fat_proc_map_to_dti_outputs(params, execution)
@@ -256,8 +244,10 @@ def fat_proc_map_to_dti(
     runner: Runner | None = None,
 ) -> FatProcMapToDtiOutputs:
     """
-    A program for mapping data sets into DWI space, suitable for aligning anatomical
-    ROI maps or EPI data to a DWI reference volume.
+    fat_proc_map_to_dti
+    
+    A program for mapping data sets into DWI space, suitable for aligning
+    anatomical ROI maps or EPI data to a DWI reference volume.
     
     Author: AFNI Developers
     
@@ -280,8 +270,6 @@ def fat_proc_map_to_dti(
     Returns:
         NamedTuple of outputs (described in `FatProcMapToDtiOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(FAT_PROC_MAP_TO_DTI_METADATA)
     params = fat_proc_map_to_dti_params(
         source=source,
         base=base,
@@ -296,13 +284,13 @@ def fat_proc_map_to_dti(
         no_cmd_out=no_cmd_out,
         no_clean=no_clean,
     )
-    return fat_proc_map_to_dti_execute(params, execution)
+    return fat_proc_map_to_dti_execute(params, runner)
 
 
 __all__ = [
     "FAT_PROC_MAP_TO_DTI_METADATA",
     "FatProcMapToDtiOutputs",
-    "FatProcMapToDtiParameters",
     "fat_proc_map_to_dti",
+    "fat_proc_map_to_dti_execute",
     "fat_proc_map_to_dti_params",
 ]

niwrap_afni/afni/fat_proc_select_vols.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 FAT_PROC_SELECT_VOLS_METADATA = Metadata(
-    id="145158b3e48ed45b0d9dd404e9867ee757291b14.boutiques",
+    id="ec1e6b53520dfa455e9cbe7fa3f85cf1640fcb20.boutiques",
     name="fat_proc_select_vols",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,18 @@ FAT_PROC_SELECT_VOLS_METADATA = Metadata(
 
 
 FatProcSelectVolsParameters = typing.TypedDict('FatProcSelectVolsParameters', {
-    "__STYXTYPE__": typing.Literal["fat_proc_select_vols"],
+    "@type": typing.NotRequired[typing.Literal["afni/fat_proc_select_vols"]],
+    "dwi_input": InputPathType,
+    "img_input": InputPathType,
+    "prefix": str,
+    "in_bads": typing.NotRequired[InputPathType | None],
+    "apply_to_vols": bool,
+    "do_movie": typing.NotRequired[str | None],
+    "workdir": typing.NotRequired[str | None],
+    "no_cmd_out": bool,
+})
+FatProcSelectVolsParametersTagged = typing.TypedDict('FatProcSelectVolsParametersTagged', {
+    "@type": typing.Literal["afni/fat_proc_select_vols"],
     "dwi_input": InputPathType,
     "img_input": InputPathType,
     "prefix": str,
@@ -24,43 +35,11 @@ FatProcSelectVolsParameters = typing.TypedDict('FatProcSelectVolsParameters', {
     "workdir": typing.NotRequired[str | None],
     "no_cmd_out": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "fat_proc_select_vols": fat_proc_select_vols_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "fat_proc_select_vols": fat_proc_select_vols_outputs,
-    }.get(t)
 
 
 class FatProcSelectVolsOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `fat_proc_select_vols(...)`.
+    Output object returned when calling `FatProcSelectVolsParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -77,7 +56,7 @@ def fat_proc_select_vols_params(
     do_movie: str | None = None,
     workdir: str | None = None,
     no_cmd_out: bool = False,
-) -> FatProcSelectVolsParameters:
+) -> FatProcSelectVolsParametersTagged:
     """
     Build parameters.
     
@@ -98,7 +77,7 @@ def fat_proc_select_vols_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "fat_proc_select_vols",
+        "@type": "afni/fat_proc_select_vols",
         "dwi_input": dwi_input,
         "img_input": img_input,
         "prefix": prefix,
@@ -131,34 +110,34 @@ def fat_proc_select_vols_cargs(
     cargs.append("fat_proc_select_vols")
     cargs.extend([
         "-in_dwi",
-        execution.input_file(params.get("dwi_input"))
+        execution.input_file(params.get("dwi_input", None))
     ])
     cargs.extend([
         "-in_img",
-        execution.input_file(params.get("img_input"))
+        execution.input_file(params.get("img_input", None))
     ])
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
-    if params.get("in_bads") is not None:
+    if params.get("in_bads", None) is not None:
         cargs.extend([
             "-in_bads",
-            execution.input_file(params.get("in_bads"))
+            execution.input_file(params.get("in_bads", None))
         ])
-    if params.get("apply_to_vols"):
+    if params.get("apply_to_vols", False):
         cargs.append("-apply_to_vols")
-    if params.get("do_movie") is not None:
+    if params.get("do_movie", None) is not None:
         cargs.extend([
             "-do_movie",
-            params.get("do_movie")
+            params.get("do_movie", None)
         ])
-    if params.get("workdir") is not None:
+    if params.get("workdir", None) is not None:
         cargs.extend([
             "-workdir",
-            params.get("workdir")
+            params.get("workdir", None)
         ])
-    if params.get("no_cmd_out"):
+    if params.get("no_cmd_out", False):
         cargs.append("-no_cmd_out")
     return cargs
 
@@ -178,16 +157,18 @@ def fat_proc_select_vols_outputs(
     """
     ret = FatProcSelectVolsOutputs(
         root=execution.output_file("."),
-        output_selector_string=execution.output_file(params.get("prefix") + "_bads.txt"),
+        output_selector_string=execution.output_file(params.get("prefix", None) + "_bads.txt"),
     )
     return ret
 
 
 def fat_proc_select_vols_execute(
     params: FatProcSelectVolsParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> FatProcSelectVolsOutputs:
     """
+    fat_proc_select_vols
+    
     Tool for building a selector string for AFNI subbricks and/or 1D text files.
     
     Author: AFNI Developers
@@ -196,10 +177,12 @@ def fat_proc_select_vols_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `FatProcSelectVolsOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(FAT_PROC_SELECT_VOLS_METADATA)
     params = execution.params(params)
     cargs = fat_proc_select_vols_cargs(params, execution)
     ret = fat_proc_select_vols_outputs(params, execution)
@@ -219,6 +202,8 @@ def fat_proc_select_vols(
     runner: Runner | None = None,
 ) -> FatProcSelectVolsOutputs:
     """
+    fat_proc_select_vols
+    
     Tool for building a selector string for AFNI subbricks and/or 1D text files.
     
     Author: AFNI Developers
@@ -242,8 +227,6 @@ def fat_proc_select_vols(
     Returns:
         NamedTuple of outputs (described in `FatProcSelectVolsOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(FAT_PROC_SELECT_VOLS_METADATA)
     params = fat_proc_select_vols_params(
         dwi_input=dwi_input,
         img_input=img_input,
@@ -254,13 +237,13 @@ def fat_proc_select_vols(
         workdir=workdir,
         no_cmd_out=no_cmd_out,
     )
-    return fat_proc_select_vols_execute(params, execution)
+    return fat_proc_select_vols_execute(params, runner)
 
 
 __all__ = [
     "FAT_PROC_SELECT_VOLS_METADATA",
     "FatProcSelectVolsOutputs",
-    "FatProcSelectVolsParameters",
     "fat_proc_select_vols",
+    "fat_proc_select_vols_execute",
     "fat_proc_select_vols_params",
 ]