niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v_1d_bport.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_1D_BPORT_METADATA = Metadata(
-    id="43a3106d2b925d564ce642121a3f6c7f7d191ebb.boutiques",
+    id="e86067e347d4697d20b355f11b8c7e19e25b7438.boutiques",
     name="1dBport",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,20 @@ V_1D_BPORT_METADATA = Metadata(
 
 
 V1dBportParameters = typing.TypedDict('V1dBportParameters', {
-    "__STYXTYPE__": typing.Literal["1dBport"],
+    "@type": typing.NotRequired[typing.Literal["afni/1dBport"]],
+    "band": list[float],
+    "invert": bool,
+    "nozero": bool,
+    "noconst": bool,
+    "quad": bool,
+    "input_dataset": typing.NotRequired[InputPathType | None],
+    "input_1d_file": typing.NotRequired[InputPathType | None],
+    "nodata": typing.NotRequired[list[float] | None],
+    "tr": typing.NotRequired[float | None],
+    "concat": typing.NotRequired[InputPathType | None],
+})
+V1dBportParametersTagged = typing.TypedDict('V1dBportParametersTagged', {
+    "@type": typing.Literal["afni/1dBport"],
     "band": list[float],
     "invert": bool,
     "nozero": bool,
@@ -26,43 +39,11 @@ V1dBportParameters = typing.TypedDict('V1dBportParameters', {
     "tr": typing.NotRequired[float | None],
     "concat": typing.NotRequired[InputPathType | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "1dBport": v_1d_bport_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "1dBport": v_1d_bport_outputs,
-    }.get(t)
 
 
 class V1dBportOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_1d_bport(...)`.
+    Output object returned when calling `V1dBportParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -81,7 +62,7 @@ def v_1d_bport_params(
     nodata: list[float] | None = None,
     tr: float | None = None,
     concat: InputPathType | None = None,
-) -> V1dBportParameters:
+) -> V1dBportParametersTagged:
     """
     Build parameters.
     
@@ -104,7 +85,7 @@ def v_1d_bport_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "1dBport",
+        "@type": "afni/1dBport",
         "band": band,
         "invert": invert,
         "nozero": nozero,
@@ -141,40 +122,40 @@ def v_1d_bport_cargs(
     cargs.append("1dBport")
     cargs.extend([
         "-band",
-        *map(str, params.get("band"))
+        *map(str, params.get("band", None))
     ])
-    if params.get("invert"):
+    if params.get("invert", False):
         cargs.append("-invert")
-    if params.get("nozero"):
+    if params.get("nozero", False):
         cargs.append("-nozero")
-    if params.get("noconst"):
+    if params.get("noconst", False):
         cargs.append("-noconst")
-    if params.get("quad"):
+    if params.get("quad", False):
         cargs.append("-quad")
-    if params.get("input_dataset") is not None:
+    if params.get("input_dataset", None) is not None:
         cargs.extend([
             "-input",
-            execution.input_file(params.get("input_dataset"))
+            execution.input_file(params.get("input_dataset", None))
         ])
-    if params.get("input_1d_file") is not None:
+    if params.get("input_1d_file", None) is not None:
         cargs.extend([
             "-input1D",
-            execution.input_file(params.get("input_1d_file"))
+            execution.input_file(params.get("input_1d_file", None))
         ])
-    if params.get("nodata") is not None:
+    if params.get("nodata", None) is not None:
         cargs.extend([
             "-nodata",
-            *map(str, params.get("nodata"))
+            *map(str, params.get("nodata", None))
         ])
-    if params.get("tr") is not None:
+    if params.get("tr", None) is not None:
         cargs.extend([
             "-TR",
-            str(params.get("tr"))
+            str(params.get("tr", None))
         ])
-    if params.get("concat") is not None:
+    if params.get("concat", None) is not None:
         cargs.extend([
             "-concat",
-            execution.input_file(params.get("concat"))
+            execution.input_file(params.get("concat", None))
         ])
     return cargs
 
@@ -201,10 +182,13 @@ def v_1d_bport_outputs(
 
 def v_1d_bport_execute(
     params: V1dBportParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1dBportOutputs:
     """
-    Creates a set of columns of sines and cosines for bandpassing via regression.
+    1dBport
+    
+    Creates a set of columns of sines and cosines for bandpassing via
+    regression.
     
     Author: AFNI Developers
     
@@ -212,10 +196,12 @@ def v_1d_bport_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1dBportOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_1D_BPORT_METADATA)
     params = execution.params(params)
     cargs = v_1d_bport_cargs(params, execution)
     ret = v_1d_bport_outputs(params, execution)
@@ -237,7 +223,10 @@ def v_1d_bport(
     runner: Runner | None = None,
 ) -> V1dBportOutputs:
     """
-    Creates a set of columns of sines and cosines for bandpassing via regression.
+    1dBport
+    
+    Creates a set of columns of sines and cosines for bandpassing via
+    regression.
     
     Author: AFNI Developers
     
@@ -262,8 +251,6 @@ def v_1d_bport(
     Returns:
         NamedTuple of outputs (described in `V1dBportOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_1D_BPORT_METADATA)
     params = v_1d_bport_params(
         band=band,
         invert=invert,
@@ -276,13 +263,13 @@ def v_1d_bport(
         tr=tr,
         concat=concat,
     )
-    return v_1d_bport_execute(params, execution)
+    return v_1d_bport_execute(params, runner)
 
 
 __all__ = [
     "V1dBportOutputs",
-    "V1dBportParameters",
     "V_1D_BPORT_METADATA",
     "v_1d_bport",
+    "v_1d_bport_execute",
     "v_1d_bport_params",
 ]

niwrap_afni/afni/v_1d_correlate.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_1D_CORRELATE_METADATA = Metadata(
-    id="0c8b033bab4ae61173f8a8fe163e6bc4b7413472.boutiques",
+    id="85b8afb40254c450c23043253ee202e66207dadf.boutiques",
     name="1dCorrelate",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,19 @@ V_1D_CORRELATE_METADATA = Metadata(
 
 
 V1dCorrelateParameters = typing.TypedDict('V1dCorrelateParameters', {
-    "__STYXTYPE__": typing.Literal["1dCorrelate"],
+    "@type": typing.NotRequired[typing.Literal["afni/1dCorrelate"]],
+    "ktaub": bool,
+    "nboot": typing.NotRequired[float | None],
+    "alpha": typing.NotRequired[float | None],
+    "block": bool,
+    "blk": bool,
+    "pearson": bool,
+    "spearman": bool,
+    "quadrant": bool,
+    "input_files": list[InputPathType],
+})
+V1dCorrelateParametersTagged = typing.TypedDict('V1dCorrelateParametersTagged', {
+    "@type": typing.Literal["afni/1dCorrelate"],
     "ktaub": bool,
     "nboot": typing.NotRequired[float | None],
     "alpha": typing.NotRequired[float | None],
@@ -25,42 +37,11 @@ V1dCorrelateParameters = typing.TypedDict('V1dCorrelateParameters', {
     "quadrant": bool,
     "input_files": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "1dCorrelate": v_1d_correlate_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class V1dCorrelateOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_1d_correlate(...)`.
+    Output object returned when calling `V1dCorrelateParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -76,7 +57,7 @@ def v_1d_correlate_params(
     pearson: bool = False,
     spearman: bool = False,
     quadrant: bool = False,
-) -> V1dCorrelateParameters:
+) -> V1dCorrelateParametersTagged:
     """
     Build parameters.
     
@@ -95,7 +76,7 @@ def v_1d_correlate_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "1dCorrelate",
+        "@type": "afni/1dCorrelate",
         "ktaub": ktaub,
         "block": block,
         "blk": blk,
@@ -126,29 +107,29 @@ def v_1d_correlate_cargs(
     """
     cargs = []
     cargs.append("1dCorrelate")
-    if params.get("ktaub"):
+    if params.get("ktaub", False):
         cargs.append("-Ktaub")
-    if params.get("nboot") is not None:
+    if params.get("nboot", None) is not None:
         cargs.extend([
             "-nboot",
-            str(params.get("nboot"))
+            str(params.get("nboot", None))
         ])
-    if params.get("alpha") is not None:
+    if params.get("alpha", None) is not None:
         cargs.extend([
             "-alpha",
-            str(params.get("alpha"))
+            str(params.get("alpha", None))
         ])
-    if params.get("block"):
+    if params.get("block", False):
         cargs.append("-block")
-    if params.get("blk"):
+    if params.get("blk", False):
         cargs.append("-blk")
-    if params.get("pearson"):
+    if params.get("pearson", False):
         cargs.append("-Pearson")
-    if params.get("spearman"):
+    if params.get("spearman", False):
         cargs.append("-Spearman")
-    if params.get("quadrant"):
+    if params.get("quadrant", False):
         cargs.append("-Quadrant")
-    cargs.extend([execution.input_file(f) for f in params.get("input_files")])
+    cargs.extend([execution.input_file(f) for f in params.get("input_files", None)])
     return cargs
 
 
@@ -173,11 +154,13 @@ def v_1d_correlate_outputs(
 
 def v_1d_correlate_execute(
     params: V1dCorrelateParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1dCorrelateOutputs:
     """
-    1dCorrelate calculates the correlation coefficients between columns of input 1D
-    files along with confidence intervals via a bootstrap procedure.
+    1dCorrelate
+    
+    1dCorrelate calculates the correlation coefficients between columns of input
+    1D files along with confidence intervals via a bootstrap procedure.
     
     Author: AFNI Developers
     
@@ -185,10 +168,12 @@ def v_1d_correlate_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1dCorrelateOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_1D_CORRELATE_METADATA)
     params = execution.params(params)
     cargs = v_1d_correlate_cargs(params, execution)
     ret = v_1d_correlate_outputs(params, execution)
@@ -209,8 +194,10 @@ def v_1d_correlate(
     runner: Runner | None = None,
 ) -> V1dCorrelateOutputs:
     """
-    1dCorrelate calculates the correlation coefficients between columns of input 1D
-    files along with confidence intervals via a bootstrap procedure.
+    1dCorrelate
+    
+    1dCorrelate calculates the correlation coefficients between columns of input
+    1D files along with confidence intervals via a bootstrap procedure.
     
     Author: AFNI Developers
     
@@ -231,8 +218,6 @@ def v_1d_correlate(
     Returns:
         NamedTuple of outputs (described in `V1dCorrelateOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_1D_CORRELATE_METADATA)
     params = v_1d_correlate_params(
         ktaub=ktaub,
         nboot=nboot,
@@ -244,13 +229,13 @@ def v_1d_correlate(
         quadrant=quadrant,
         input_files=input_files,
     )
-    return v_1d_correlate_execute(params, execution)
+    return v_1d_correlate_execute(params, runner)
 
 
 __all__ = [
     "V1dCorrelateOutputs",
-    "V1dCorrelateParameters",
     "V_1D_CORRELATE_METADATA",
     "v_1d_correlate",
+    "v_1d_correlate_execute",
     "v_1d_correlate_params",
 ]