niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/gifti_tool.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 GIFTI_TOOL_METADATA = Metadata(
-    id="e21384bfaf8b8bcf833d65f05be55ac0e9f035a6.boutiques",
+    id="432b25ea9117b6e842950de2da8d9a73405281a1.boutiques",
     name="gifti_tool",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,32 @@ GIFTI_TOOL_METADATA = Metadata(
 
 
 GiftiToolParameters = typing.TypedDict('GiftiToolParameters', {
-    "__STYXTYPE__": typing.Literal["gifti_tool"],
+    "@type": typing.NotRequired[typing.Literal["afni/gifti_tool"]],
+    "infile": InputPathType,
+    "new_numda": typing.NotRequired[float | None],
+    "new_dtype": typing.NotRequired[str | None],
+    "new_intent": typing.NotRequired[str | None],
+    "new_ndim": typing.NotRequired[float | None],
+    "new_dims": typing.NotRequired[list[float] | None],
+    "write_gifti": str,
+    "set_extern_filelist": typing.NotRequired[list[str] | None],
+    "mod_add_data": bool,
+    "verb": typing.NotRequired[float | None],
+    "show_gifti": bool,
+    "read_das": typing.NotRequired[list[float] | None],
+    "mod_gim_atr": typing.NotRequired[list[str] | None],
+    "mod_gim_meta": typing.NotRequired[list[str] | None],
+    "mod_da_atr": typing.NotRequired[list[str] | None],
+    "mod_da_meta": typing.NotRequired[list[str] | None],
+    "mod_das": typing.NotRequired[list[float] | None],
+    "new_dset": bool,
+    "compare_gifti": bool,
+    "compare_data": bool,
+    "compare_verb": typing.NotRequired[float | None],
+    "approx_gifti": bool,
+})
+GiftiToolParametersTagged = typing.TypedDict('GiftiToolParametersTagged', {
+    "@type": typing.Literal["afni/gifti_tool"],
     "infile": InputPathType,
     "new_numda": typing.NotRequired[float | None],
     "new_dtype": typing.NotRequired[str | None],
@@ -38,43 +63,11 @@ GiftiToolParameters = typing.TypedDict('GiftiToolParameters', {
     "compare_verb": typing.NotRequired[float | None],
     "approx_gifti": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "gifti_tool": gifti_tool_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "gifti_tool": gifti_tool_outputs,
-    }.get(t)
 
 
 class GiftiToolOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `gifti_tool(...)`.
+    Output object returned when calling `GiftiToolParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -105,7 +98,7 @@ def gifti_tool_params(
     compare_data: bool = False,
     compare_verb: float | None = None,
     approx_gifti: bool = False,
-) -> GiftiToolParameters:
+) -> GiftiToolParametersTagged:
     """
     Build parameters.
     
@@ -136,7 +129,7 @@ def gifti_tool_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "gifti_tool",
+        "@type": "afni/gifti_tool",
         "infile": infile,
         "write_gifti": write_gifti,
         "mod_add_data": mod_add_data,
@@ -194,93 +187,93 @@ def gifti_tool_cargs(
     cargs.append("gifti_tool")
     cargs.extend([
         "-infile",
-        execution.input_file(params.get("infile"))
+        execution.input_file(params.get("infile", None))
     ])
-    if params.get("new_numda") is not None:
+    if params.get("new_numda", None) is not None:
         cargs.extend([
             "-new_numDA",
-            str(params.get("new_numda"))
+            str(params.get("new_numda", None))
         ])
-    if params.get("new_dtype") is not None:
+    if params.get("new_dtype", None) is not None:
         cargs.extend([
             "-new_dtype",
-            params.get("new_dtype")
+            params.get("new_dtype", None)
         ])
-    if params.get("new_intent") is not None:
+    if params.get("new_intent", None) is not None:
         cargs.extend([
             "-new_intent",
-            params.get("new_intent")
+            params.get("new_intent", None)
         ])
-    if params.get("new_ndim") is not None:
+    if params.get("new_ndim", None) is not None:
         cargs.extend([
             "-new_ndim",
-            str(params.get("new_ndim"))
+            str(params.get("new_ndim", None))
         ])
-    if params.get("new_dims") is not None:
+    if params.get("new_dims", None) is not None:
         cargs.extend([
             "-new_dims",
-            *map(str, params.get("new_dims"))
+            *map(str, params.get("new_dims", None))
         ])
     cargs.extend([
         "-write_gifti",
-        params.get("write_gifti")
+        params.get("write_gifti", None)
     ])
-    if params.get("set_extern_filelist") is not None:
+    if params.get("set_extern_filelist", None) is not None:
         cargs.extend([
             "-set_extern_filelist",
-            *params.get("set_extern_filelist")
+            *params.get("set_extern_filelist", None)
         ])
-    if params.get("mod_add_data"):
+    if params.get("mod_add_data", False):
         cargs.append("-mod_add_data")
-    if params.get("verb") is not None:
+    if params.get("verb", None) is not None:
         cargs.extend([
             "-verb",
-            str(params.get("verb"))
+            str(params.get("verb", None))
         ])
-    if params.get("show_gifti"):
+    if params.get("show_gifti", False):
         cargs.append("-show_gifti")
-    if params.get("read_das") is not None:
+    if params.get("read_das", None) is not None:
         cargs.extend([
             "-read_DAs",
-            *map(str, params.get("read_das"))
+            *map(str, params.get("read_das", None))
         ])
-    if params.get("mod_gim_atr") is not None:
+    if params.get("mod_gim_atr", None) is not None:
         cargs.extend([
             "-mod_gim_atr",
-            *params.get("mod_gim_atr")
+            *params.get("mod_gim_atr", None)
         ])
-    if params.get("mod_gim_meta") is not None:
+    if params.get("mod_gim_meta", None) is not None:
         cargs.extend([
             "-mod_gim_meta",
-            *params.get("mod_gim_meta")
+            *params.get("mod_gim_meta", None)
         ])
-    if params.get("mod_da_atr") is not None:
+    if params.get("mod_da_atr", None) is not None:
         cargs.extend([
             "-mod_DA_atr",
-            *params.get("mod_da_atr")
+            *params.get("mod_da_atr", None)
         ])
-    if params.get("mod_da_meta") is not None:
+    if params.get("mod_da_meta", None) is not None:
         cargs.extend([
             "-mod_DA_meta",
-            *params.get("mod_da_meta")
+            *params.get("mod_da_meta", None)
         ])
-    if params.get("mod_das") is not None:
+    if params.get("mod_das", None) is not None:
         cargs.extend([
             "-mod_DAs",
-            *map(str, params.get("mod_das"))
+            *map(str, params.get("mod_das", None))
         ])
-    if params.get("new_dset"):
+    if params.get("new_dset", False):
         cargs.append("-new_dset")
-    if params.get("compare_gifti"):
+    if params.get("compare_gifti", False):
         cargs.append("-compare_gifti")
-    if params.get("compare_data"):
+    if params.get("compare_data", False):
         cargs.append("-compare_data")
-    if params.get("compare_verb") is not None:
+    if params.get("compare_verb", None) is not None:
         cargs.extend([
             "-compare_verb",
-            str(params.get("compare_verb"))
+            str(params.get("compare_verb", None))
         ])
-    if params.get("approx_gifti"):
+    if params.get("approx_gifti", False):
         cargs.append("-approx_gifti")
     return cargs
 
@@ -300,16 +293,18 @@ def gifti_tool_outputs(
     """
     ret = GiftiToolOutputs(
         root=execution.output_file("."),
-        output_gifti=execution.output_file(params.get("write_gifti")),
+        output_gifti=execution.output_file(params.get("write_gifti", None)),
     )
     return ret
 
 
 def gifti_tool_execute(
     params: GiftiToolParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> GiftiToolOutputs:
     """
+    gifti_tool
+    
     Tool for creating, displaying, modifying, or comparing GIFTI datasets.
     
     Author: AFNI Developers
@@ -318,10 +313,12 @@ def gifti_tool_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `GiftiToolOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GIFTI_TOOL_METADATA)
     params = execution.params(params)
     cargs = gifti_tool_cargs(params, execution)
     ret = gifti_tool_outputs(params, execution)
@@ -355,6 +352,8 @@ def gifti_tool(
     runner: Runner | None = None,
 ) -> GiftiToolOutputs:
     """
+    gifti_tool
+    
     Tool for creating, displaying, modifying, or comparing GIFTI datasets.
     
     Author: AFNI Developers
@@ -388,8 +387,6 @@ def gifti_tool(
     Returns:
         NamedTuple of outputs (described in `GiftiToolOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(GIFTI_TOOL_METADATA)
     params = gifti_tool_params(
         infile=infile,
         new_numda=new_numda,
@@ -414,13 +411,13 @@ def gifti_tool(
         compare_verb=compare_verb,
         approx_gifti=approx_gifti,
     )
-    return gifti_tool_execute(params, execution)
+    return gifti_tool_execute(params, runner)
 
 
 __all__ = [
     "GIFTI_TOOL_METADATA",
     "GiftiToolOutputs",
-    "GiftiToolParameters",
     "gifti_tool",
+    "gifti_tool_execute",
     "gifti_tool_params",
 ]

niwrap_afni/afni/gltsymtest.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 GLTSYMTEST_METADATA = Metadata(
-    id="cb3ce3fd8a02c860741465a6388d7e399c05c7bb.boutiques",
+    id="a1f6825f5f2c006c71df619ba8e2a9e407a6dc79.boutiques",
     name="GLTsymtest",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,47 +14,22 @@ GLTSYMTEST_METADATA = Metadata(
 
 
 GltsymtestParameters = typing.TypedDict('GltsymtestParameters', {
-    "__STYXTYPE__": typing.Literal["GLTsymtest"],
+    "@type": typing.NotRequired[typing.Literal["afni/GLTsymtest"]],
+    "badonly": bool,
+    "varlist": str,
+    "expr": list[str],
+})
+GltsymtestParametersTagged = typing.TypedDict('GltsymtestParametersTagged', {
+    "@type": typing.Literal["afni/GLTsymtest"],
     "badonly": bool,
     "varlist": str,
     "expr": list[str],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "GLTsymtest": gltsymtest_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class GltsymtestOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `gltsymtest(...)`.
+    Output object returned when calling `GltsymtestParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -64,7 +39,7 @@ def gltsymtest_params(
     varlist: str,
     expr: list[str],
     badonly: bool = False,
-) -> GltsymtestParameters:
+) -> GltsymtestParametersTagged:
     """
     Build parameters.
     
@@ -77,7 +52,7 @@ def gltsymtest_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "GLTsymtest",
+        "@type": "afni/GLTsymtest",
         "badonly": badonly,
         "varlist": varlist,
         "expr": expr,
@@ -100,10 +75,10 @@ def gltsymtest_cargs(
     """
     cargs = []
     cargs.append("GLTsymtest")
-    if params.get("badonly"):
+    if params.get("badonly", False):
         cargs.append("-badonly")
-    cargs.append(params.get("varlist"))
-    cargs.extend(params.get("expr"))
+    cargs.append(params.get("varlist", None))
+    cargs.extend(params.get("expr", None))
     return cargs
 
 
@@ -128,11 +103,13 @@ def gltsymtest_outputs(
 
 def gltsymtest_execute(
     params: GltsymtestParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> GltsymtestOutputs:
     """
-    A tool to test the validity of '-gltsym' strings for use with 3dDeconvolve or
-    3dREMLfit.
+    GLTsymtest
+    
+    A tool to test the validity of '-gltsym' strings for use with 3dDeconvolve
+    or 3dREMLfit.
     
     Author: AFNI Developers
     
@@ -140,10 +117,12 @@ def gltsymtest_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `GltsymtestOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(GLTSYMTEST_METADATA)
     params = execution.params(params)
     cargs = gltsymtest_cargs(params, execution)
     ret = gltsymtest_outputs(params, execution)
@@ -158,8 +137,10 @@ def gltsymtest(
     runner: Runner | None = None,
 ) -> GltsymtestOutputs:
     """
-    A tool to test the validity of '-gltsym' strings for use with 3dDeconvolve or
-    3dREMLfit.
+    GLTsymtest
+    
+    A tool to test the validity of '-gltsym' strings for use with 3dDeconvolve
+    or 3dREMLfit.
     
     Author: AFNI Developers
     
@@ -174,20 +155,18 @@ def gltsymtest(
     Returns:
         NamedTuple of outputs (described in `GltsymtestOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(GLTSYMTEST_METADATA)
     params = gltsymtest_params(
         badonly=badonly,
         varlist=varlist,
         expr=expr,
     )
-    return gltsymtest_execute(params, execution)
+    return gltsymtest_execute(params, runner)
 
 
 __all__ = [
     "GLTSYMTEST_METADATA",
     "GltsymtestOutputs",
-    "GltsymtestParameters",
     "gltsymtest",
+    "gltsymtest_execute",
     "gltsymtest_params",
 ]

niwrap_afni/afni/help_format.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 HELP_FORMAT_METADATA = Metadata(
-    id="235011b0efef42f171599d4e3d71ad2882a27178.boutiques",
+    id="64e26d5d8479285f3b0f689c7f6ac596a8fab073.boutiques",
     name="help_format",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ HELP_FORMAT_METADATA = Metadata(
 
 
 HelpFormatParameters = typing.TypedDict('HelpFormatParameters', {
-    "__STYXTYPE__": typing.Literal["help_format"],
+    "@type": typing.NotRequired[typing.Literal["afni/help_format"]],
+    "stdin": str,
+})
+HelpFormatParametersTagged = typing.TypedDict('HelpFormatParametersTagged', {
+    "@type": typing.Literal["afni/help_format"],
     "stdin": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "help_format": help_format_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "help_format": help_format_outputs,
-    }.get(t)
 
 
 class HelpFormatOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `help_format(...)`.
+    Output object returned when calling `HelpFormatParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class HelpFormatOutputs(typing.NamedTuple):
 
 def help_format_params(
     stdin: str,
-) -> HelpFormatParameters:
+) -> HelpFormatParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +45,7 @@ def help_format_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "help_format",
+        "@type": "afni/help_format",
         "stdin": stdin,
     }
     return params
@@ -94,7 +66,7 @@ def help_format_cargs(
     """
     cargs = []
     cargs.append("help_format")
-    cargs.append(params.get("stdin"))
+    cargs.append(params.get("stdin", None))
     return cargs
 
 
@@ -120,9 +92,11 @@ def help_format_outputs(
 
 def help_format_execute(
     params: HelpFormatParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> HelpFormatOutputs:
     """
+    help_format
+    
     Formats text by converting URLs into HTML hyperlinks.
     
     Author: AFNI Developers
@@ -131,10 +105,12 @@ def help_format_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `HelpFormatOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(HELP_FORMAT_METADATA)
     params = execution.params(params)
     cargs = help_format_cargs(params, execution)
     ret = help_format_outputs(params, execution)
@@ -147,6 +123,8 @@ def help_format(
     runner: Runner | None = None,
 ) -> HelpFormatOutputs:
     """
+    help_format
+    
     Formats text by converting URLs into HTML hyperlinks.
     
     Author: AFNI Developers
@@ -159,18 +137,16 @@ def help_format(
     Returns:
         NamedTuple of outputs (described in `HelpFormatOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(HELP_FORMAT_METADATA)
     params = help_format_params(
         stdin=stdin,
     )
-    return help_format_execute(params, execution)
+    return help_format_execute(params, runner)
 
 
 __all__ = [
     "HELP_FORMAT_METADATA",
     "HelpFormatOutputs",
-    "HelpFormatParameters",
     "help_format",
+    "help_format_execute",
     "help_format_params",
 ]