npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/mol-plugin-state/builder/structure/representation.js.map CHANGED Viewed

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1	+ 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package/lib/mol-plugin-state/builder/structure.js CHANGED Viewed

@@ -34,7 +34,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         provider = typeof format === 'string' ? this.plugin.dataFormats.get(format) : format;
                         if (!provider)
-                            throw new Error("'" + format + "' is not a supported data format.");
+                            throw new Error("'".concat(format, "' is not a supported data format."));
                         return [4 /*yield*/, provider.parse(this.plugin, data)];
                     case 1:
                         trajectory = (_a.sent()).trajectory;
@@ -120,7 +120,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         state = this.dataState;
                         root = state.build().to(structure);
-                        keyTag = "structure-component-" + key;
+                        keyTag = "structure-component-".concat(key);
                         component = root.applyOrUpdateTagged(keyTag, StateTransforms.Model.StructureComponent, params, {
                             tags: tags ? __spreadArray(__spreadArray([], tags, true), [keyTag], false) : [keyTag]
                         });
@@ -150,7 +150,7 @@ var StructureBuilder = /** @class */ (function () {
             type: { name: 'static', params: type },
             nullIfEmpty: true,
             label: ((params === null || params === void 0 ? void 0 : params.label) || '').trim()
-        }, "static-" + type, params === null || params === void 0 ? void 0 : params.tags);
+        }, "static-".concat(type), params === null || params === void 0 ? void 0 : params.tags);
     };
     StructureBuilder.prototype.tryCreateComponentFromSelection = function (structure, selection, key, params) {
         var _this = this;

package/lib/mol-plugin-state/builder/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"structure.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/builder/structure.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,cAAc,EAA0E,MAAM,iBAAiB,CAAC;AACzH,OAAO,EAAE,iBAAiB,IAAI,EAAE,EAAE,MAAM,YAAY,CAAC;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAIhD,OAAO,EAAE,8BAA8B,EAAE,MAAM,4BAA4B,CAAC;AAE5E,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAC;AAC7D,OAAO,EAAE,aAAa,EAAE,MAAM,qDAAqD,CAAC;AACpF,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AAEzD,OAAO,EAAE,0BAA0B,EAAE,MAAM,uBAAuB,CAAC;AAEnE;IAgKI,0BAAmB,MAAqB;QAArB,WAAM,GAAN,MAAM,CAAe;QA5I/B,cAAS,GAAG,IAAI,0BAA0B,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACxD,mBAAc,GAAG,IAAI,8BAA8B,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IA4I1E,CAAC;IAhKD,sBAAY,uCAAS;aAArB;YACI,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QAClC,CAAC;;;OAAA;IAEa,8CAAmB,GAAjC,UAAkC,IAAqD,EAAE,MAA0D;;;;;;wBACzI,QAAQ,GAAG,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAA6B,CAAC,CAAC,CAAC,MAAM,CAAC;wBACvH,IAAI,CAAC,QAAQ;4BAAE,MAAM,IAAI,KAAK,CAAC,WAAI,MAAM,sCAAmC,CAAC,CAAC;wBACvD,qBAAM,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wBAAtD,UAAU,GAAK,CAAA,SAAuC,CAAA,WAA5C;wBAClB,sBAAO,UAAU,EAAC;;;;KACrB;IAEO,8CAAmB,GAA3B,UAA4B,IAAkC,EAAE,MAAqE;QACjI,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,UAAU,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC;aACpC,KAAK,CAAC,eAAe,CAAC,IAAI,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,EAAE,CAAC;aAC3E,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,KAAK,CAAC,CAAC,CAAC;QAC7D,OAAO,UAAU,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACtD,CAAC;IAOD,0CAAe,GAAf,UAAgB,IAAoB,EAAE,MAAW;QAC7C,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,IAAI,CAAC,SAAS,EAAE,IAAsB,CAAC,CAAC;QACpF,IAAI,CAAC,IAAI;YAAE,MAAM,IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAC;QAEjD,IAAI,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE;YAC3B,OAAO,IAAI,CAAC,mBAAmB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;SACjD;aAAM;YACH,OAAO,IAAI,CAAC,mBAAmB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;SACjD;IACL,CAAC;IAED,sCAAW,GAAX,UAAY,UAAkD,EAAE,MAAiF,EAAE,YAA4C;QAC3L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,UAAU,CAAC;aACrC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,mBAAmB,EAAE,MAAM,IAAI,EAAE,UAAU,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAE5G,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,gDAAqB,GAArB,UAAsB,KAAwC,EAAE,MAAmF,EAAE,YAA4C;QAC7L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC;aAChC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,qBAAqB,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QACzF,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,4CAAiB,GAAjB,UAAkB,KAAwC,EAAE,MAAsF,EAAE,YAA4C;;QAC5L,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,CAAC,GAAG,MAAA,MAAA,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,KAAK,CAAC,0CAAE,GAAG,0CAAE,IAAI,CAAC;QAClE,IAAI,CAAC,CAAC;YAAE,OAAO;QACf,IAAM,IAAI,GAAG,MAAA,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,0CAAE,UAAU,CAAC,IAAI,CAAC;QAC5D,IAAI,cAAc,CAAC,MAAM,CAAC,IAAI,CAAC;YAAE,OAAO;QAExC,IAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC;aACnC,KAAK,CAAC,eAAe,CAAC,cAAc,CAAC,eAAe,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAC5F,OAAO,QAAQ,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACpD,CAAC;IAED,0CAAe,GAAf,UAAgB,QAA2C,EAAE,MAAuC,EAAE,YAA4C;;QAC9I,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAE7B,IAAI,CAAC,MAAM,EAAE;YACT,IAAM,KAAK,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;YAC9D,IAAI,KAAK,EAAE;gBACP,IAAM,IAAI,GAAG,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,MAAA,KAAK,CAAC,GAAG,0CAAE,IAAK,CAAC,CAAC;gBAC1D,IAAI,CAAC,IAAI,IAAI,CAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,UAAU,CAAC,MAAM,MAAK,CAAC;oBAAE,MAAM,GAAG,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAE,EAAG,EAAE,CAAC;aACvF;SACJ;QAED,IAAM,SAAS,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC;aACvC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,EAAG,EAAE,EAAE,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC;QAErI,OAAO,SAAS,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACrD,CAAC;IAED,oDAAyB,GAAzB,UAA0B,SAAgD,EAAE,MAAuF;QAC/J,IAAM,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;QAC7B,IAAM,KAAK,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,SAAS,CAAC;aACpC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,yBAAyB,EAAE,MAAM,CAAC,CAAC;QACpE,OAAO,KAAK,CAAC,MAAM,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;IAED,+CAAoB,GAApB,UAAqB,IAAqB;QACtC,OAAO,IAAI,CAAC,SAAS,CAAC,WAAW,KAAK,eAAe,CAAC,KAAK,CAAC,kBAAkB,CAAC;IACnF,CAAC;IAED,uDAAuD;IACjD,6CAAkB,GAAxB,UAAyB,SAAgD,EAAE,MAAgC,EAAE,GAAW,EAAE,IAAe;;;;;;;wBAC/H,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC;wBAEvB,IAAI,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;wBAEnC,MAAM,GAAG,8BAAuB,GAAG,CAAE,CAAC;wBACtC,SAAS,GAAG,IAAI,CAAC,mBAAmB,CAAC,MAAM,EAAE,eAAe,CAAC,KAAK,CAAC,kBAAkB,EAAE,MAAM,EAAE;4BACjG,IAAI,EAAE,IAAI,CAAC,CAAC,iCAAK,IAAI,UAAE,MAAM,UAAE,CAAC,CAAC,CAAC,MAAM,CAAC;yBAC5C,CAAC,CAAC;wBAEH,qBAAM,SAAS,CAAC,MAAM,EAAE,EAAA;;wBAAxB,SAAwB,CAAC;wBAEnB,QAAQ,GAAG,SAAS,CAAC,QAAQ,CAAC;6BAEhC,CAAA,CAAC,QAAQ,CAAC,IAA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package/lib/mol-plugin-state/formats/registry.js CHANGED Viewed

@@ -121,7 +121,7 @@ var DataFormatRegistry = /** @class */ (function () {
             return this._map.get(name);
         }
         else {
-            throw new Error("unknown data format name '" + name + "'");
+            throw new Error("unknown data format name '".concat(name, "'"));
         }
     };
     Object.defineProperty(DataFormatRegistry.prototype, "list", {

package/lib/mol-plugin-state/formats/registry.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/formats/registry.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,EAAE,wBAAwB,EAAE,MAAM,cAAc,CAAC;AACxD,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAC;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,SAAS,CAAC;AAC9C,OAAO,EAAE,uBAAuB,EAAE,MAAM,aAAa,CAAC;AAEtD;IAsCI;QArCQ,UAAK,GAAqD,EAAE,CAAA;QAC5D,SAAI,GAAG,IAAI,GAAG,EAA8B,CAAA;QAC5C,gBAAW,GAA4B,SAAS,CAAA;QAChD,sBAAiB,GAA4B,SAAS,CAAA;QACtD,aAAQ,GAA2C,SAAS,CAAA;QAkChE,KAAsB,UAAoB,EAApB,6CAAoB,EAApB,kCAAoB,EAApB,IAAoB;YAA/B,IAAA,+BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA2B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC5D,KAAsB,UAAuB,EAAvB,mDAAuB,EAAvB,qCAAuB,EAAvB,IAAuB;YAAlC,IAAA,kCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA8B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC/D,KAAsB,UAAmB,EAAnB,2CAAmB,EAAnB,iCAAmB,EAAnB,IAAmB;YAA9B,IAAA,8BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA0B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC3D,KAAsB,UAAwB,EAAxB,qDAAwB,EAAxB,sCAAwB,EAAxB,IAAwB;YAAnC,IAAA,mCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA+B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;IACpE,CAAC;IApCD,sBAAI,qCAAK;aAAT;YACI,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAqB,EAA9C,CAA8C,CAAC,CAAC;QAC/E,CAAC;;;OAAA;IAED,sBAAI,0CAAU;aAAd;YACI,IAAI,IAAI,CAAC,WAAW;gBAAE,OAAO,IAAI,CAAC,WAAW,CAAC;YAC9C,IAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;YACrC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAC1B,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;gBAC/D,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;YACnE,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,WAAW,GAAG,UAAU,CAAC;YAC9B,OAAO,UAAU,CAAC;QACtB,CAAC;;;OAAA;IAED,sBAAI,gDAAgB;aAApB;YACI,IAAI,IAAI,CAAC,iBAAiB;gBAAE,OAAO,IAAI,CAAC,iBAAiB,CAAC;YAC1D,IAAM,gBAAgB,GAAG,IAAI,GAAG,EAAU,CAAC;YAC3C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAAO,OAAA,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,gBAAgB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAzB,CAAyB,CAAC,CAAA;aAAA,CAAC,CAAC;YAC3G,IAAI,CAAC,iBAAiB,GAAG,gBAAgB,CAAC;YAC1C,OAAO,gBAAgB,CAAC;QAC5B,CAAC;;;OAAA;IAED,sBAAI,uCAAO;aAAX;YACI,IAAI,IAAI,CAAC,QAAQ;gBAAE,OAAO,IAAI,CAAC,QAAQ,CAAC;YACxC,IAAM,OAAO,GAA+B,EAAE,CAAC;YAC/C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAkB;oBAAhB,IAAI,UAAA,EAAE,QAAQ,cAAA;gBAAO,OAAA,OAAO,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC;YAA7D,CAA6D,CAAC,CAAC;YAC1G,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC;YACxB,OAAO,OAAO,CAAC;QACnB,CAAC;;;OAAA;IAOA,CAAC;IAEM,mCAAM,GAAd;QACI,IAAI,CAAC,WAAW,GAAG,SAAS,CAAC;QAC7B,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAC;QACnC,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAC;IAC9B,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY,EAAE,QAA4B;QAC1C,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAClC,CAAC;IAED,mCAAM,GAAN,UAAO,IAAY;QACf,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,IAAI,EAAf,CAAe,CAAC,EAAE,CAAC,CAAC,CAAC;QACjE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;IAED,iCAAI,GAAJ,UAAK,IAAc,EAAE,eAA8E;QAC/F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxC,IAAA,QAAQ,GAAK,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,SAAlB,CAAmB;YAEnC,IAAI,MAAM,GAAG,KAAK,CAAC;YACnB,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;iBAC5F,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;YACtG,IAAI,MAAM,IAAI,CAAC,CAAC,QAAQ,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC,IAAI,CAAC,CAAC;gBAAE,OAAO,QAAQ,CAAC;SAChH;QACD,OAAO;IACX,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY;QACZ,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YACrB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAE,CAAC;SAC/B;aAAM;YACH,MAAM,IAAI,KAAK,CAAC,oCAA6B,IAAI,MAAG,CAAC,CAAC;SACzD;IACL,CAAC;IAED,sBAAI,oCAAI;aAAR;YACI,OAAO,IAAI,CAAC,KAAK,CAAC;QACtB,CAAC;;;OAAA;IACL,yBAAC;AAAD,CAAC,AAtFD,IAsFC"}

package/lib/mol-plugin-state/formats/volume.d.ts CHANGED Viewed

@@ -69,17 +69,17 @@ export declare const CubeProvider: {
         structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Molecule.Model, PluginStateObject.Molecule.Structure, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             type: import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 ijkMin: any;
                 ijkMax: any;
             }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
-            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
                 radius: any;
             }>, "symmetry-mates"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
@@ -150,17 +150,17 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
         structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Molecule.Model, PluginStateObject.Molecule.Structure, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             type: import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 ijkMin: any;
                 ijkMax: any;
             }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
+            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
-            }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-                dynamicBonds: any;
                 radius: any;
             }>, "symmetry-mates"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;

package/lib/mol-plugin-state/helpers/root-structure.d.ts CHANGED Viewed

@@ -14,17 +14,17 @@ export declare namespace RootStructureDefinition {
     function getParams(model?: Model, defaultValue?: 'auto' | 'model' | 'assembly' | 'symmetry' | 'symmetry-mates' | 'symmetry-assembly'): {
         type: PD.Mapped<PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: boolean | undefined;
             ijkMin: Vec3;
             ijkMax: Vec3;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: boolean | undefined;
             id: string | undefined;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: boolean | undefined;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: boolean | undefined;
             radius: number;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;

package/lib/mol-plugin-state/helpers/root-structure.js CHANGED Viewed

@@ -20,19 +20,19 @@ export var RootStructureDefinition;
 (function (RootStructureDefinition) {
     function getParams(model, defaultValue) {
         var symmetry = model && ModelSymmetry.Provider.get(model);
-        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, a.id + ": " + stringToWords(a.details)]; }) : [];
+        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, "".concat(a.id, ": ").concat(stringToWords(a.details))]; }) : [];
         var showSymm = !symmetry ? true : !SpacegroupCell.isZero(symmetry.spacegroup.cell);
         var operatorOptions = [];
         if (symmetry) {
             var operators = symmetry.spacegroup.operators;
             for (var i = 0, il = operators.length; i < il; i++) {
-                operatorOptions.push([i, i + 1 + ": " + Spacegroup.getOperatorXyz(operators[i])]);
+                operatorOptions.push([i, "".concat(i + 1, ": ").concat(Spacegroup.getOperatorXyz(operators[i]))]);
             }
         }
         var asymIdsOptions = [];
         if (model) {
             model.properties.structAsymMap.forEach(function (v) {
-                var label = v.id === v.auth_id ? v.id : v.id + " [auth " + v.auth_id + "]";
+                var label = v.id === v.auth_id ? v.id : "".concat(v.id, " [auth ").concat(v.auth_id, "]");
                 asymIdsOptions.push([v.id, label]);
             });
         }
@@ -48,11 +48,11 @@ export var RootStructureDefinition;
                     operators: PD.ObjectList({
                         index: PD.Select(0, operatorOptions),
                         shift: PD.Vec3(Vec3(), { step: 1 }, { label: 'IJK', fieldLabels: { x: 'I', y: 'J', z: 'K' } })
-                    }, function (e) { return e.index + 1 + "_" + e.shift.map(function (a) { return a + 5; }).join(''); }, {
+                    }, function (e) { return "".concat(e.index + 1, "_").concat(e.shift.map(function (a) { return a + 5; }).join('')); }, {
                         defaultValue: []
                     }),
                     asymIds: PD.MultiSelect([], asymIdsOptions)
-                }, function (e) { return e.asymIds.length + " asym ids, " + e.operators.length + " operators"; }, {
+                }, function (e) { return "".concat(e.asymIds.length, " asym ids, ").concat(e.operators.length, " operators"); }, {
                     defaultValue: []
                 }) }, CommonStructureParams), { isFlat: true })
         };
@@ -93,12 +93,12 @@ export var RootStructureDefinition;
                             id = symmetry.assemblies[0].id;
                         }
                         if (!symmetry || symmetry.assemblies.length === 0) {
-                            plugin.log.warn("Model '" + model.entryId + "' has no assembly, returning model structure.");
+                            plugin.log.warn("Model '".concat(model.entryId, "' has no assembly, returning model structure."));
                         }
                         else {
                             asm = Symmetry.findAssembly(model, id || '');
                             if (!asm) {
-                                plugin.log.warn("Model '" + model.entryId + "' has no assembly called '" + id + "', returning model structure.");
+                                plugin.log.warn("Model '".concat(model.entryId, "' has no assembly called '").concat(id, "', returning model structure."));
                             }
                         }
                         base = Structure.ofModel(model, props);
@@ -110,7 +110,7 @@ export var RootStructureDefinition;
                         return [4 /*yield*/, StructureSymmetry.buildAssembly(base, id).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Assembly " + id, description: Structure.elementDescription(s) };
+                        objProps = { label: "Assembly ".concat(id), description: Structure.elementDescription(s) };
                         return [2 /*return*/, new SO.Molecule.Structure(s, objProps)];
                 }
             });
@@ -126,7 +126,7 @@ export var RootStructureDefinition;
                         return [4 /*yield*/, StructureSymmetry.buildSymmetryRange(base, ijkMin, ijkMax).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Symmetry [" + ijkMin + "] to [" + ijkMax + "]", description: Structure.elementDescription(s) };
+                        objProps = { label: "Symmetry [".concat(ijkMin, "] to [").concat(ijkMax, "]"), description: Structure.elementDescription(s) };
                         return [2 /*return*/, new SO.Molecule.Structure(s, objProps)];
                 }
             });
@@ -195,7 +195,7 @@ export var RootStructureDefinition;
                 if (params.name === 'symmetry-assembly') {
                     return [2 /*return*/, buildSymmetryAssembly(ctx, model, params.params.generators, symmetry, props)];
                 }
-                throw new Error("Unknown represetation type: " + params.name);
+                throw new Error("Unknown represetation type: ".concat(params.name));
             });
         });
     }

package/lib/mol-plugin-state/helpers/root-structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/structure-component.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ import { Script } from '../../mol-script/script';
 export declare const StaticStructureComponentTypes: readonly ["all", "polymer", "protein", "nucleic", "water", "ion", "lipid", "branched", "ligand", "non-standard", "coarse"];
 export declare type StaticStructureComponentType = (typeof StaticStructureComponentTypes)[number];
 export declare const StructureComponentParams: () => {
-    type: PD.Mapped<PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "all" | "protein" | "nucleic" | "lipid" | "non-standard" | "coarse", "static"> | PD.NamedParams<Expression, "expression"> | PD.NamedParams<StructureElement.Bundle, "bundle">>;
+    type: PD.Mapped<PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "lipid" | "all" | "coarse" | "protein" | "nucleic" | "non-standard", "static"> | PD.NamedParams<StructureElement.Bundle, "bundle"> | PD.NamedParams<Expression, "expression">>;
     nullIfEmpty: PD.Base<boolean | undefined>;
     label: PD.Text<string>;
 };
@@ -21,7 +21,7 @@ export declare type StructureComponentParams = PD.ValuesFor<ReturnType<typeof St
 export declare function createStructureComponent(a: Structure, params: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;
-}): SO.Molecule.Structure | StateObject<any, any>;
+}): StateObject<any, any> | SO.Molecule.Structure;
 export declare function updateStructureComponent(a: Structure, b: SO.Molecule.Structure, oldParams: StructureComponentParams, newParams: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;

package/lib/mol-plugin-state/helpers/structure-component.js CHANGED Viewed

@@ -86,7 +86,7 @@ export function createStructureComponent(a, params, cache) {
                     query = StructureSelectionQueries.coarse.query;
                     label = 'Coarse';
                     break;
-                default: throw new Error(params.type + " is a not valid complex element.");
+                default: throw new Error("".concat(params.type, " is a not valid complex element."));
             }
             var result = query(new QueryContext(a));
             component = Sel.unionStructure(result);
@@ -108,7 +108,7 @@ export function createStructureComponent(a, params, cache) {
     }
     if (params.nullIfEmpty && component.elementCount === 0)
         return StateObject.Null;
-    var props = { label: "" + (params.label || label || 'Component'), description: Structure.elementDescription(component) };
+    var props = { label: "".concat(params.label || label || 'Component'), description: Structure.elementDescription(component) };
     return new SO.Molecule.Structure(component, props);
 }
 export function updateStructureComponent(a, b, oldParams, newParams, cache) {
@@ -171,7 +171,7 @@ export function updateStructureComponent(a, b, oldParams, newParams, cache) {
     }
     if (oldParams.label !== newParams.label) {
         updated = true;
-        b.label = "" + (newParams.label || b.label);
+        b.label = "".concat(newParams.label || b.label);
     }
     return updated ? StateTransformer.UpdateResult.Updated : StateTransformer.UpdateResult.Unchanged;
 }

package/lib/mol-plugin-state/helpers/structure-component.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/structure-query.js CHANGED Viewed

@@ -41,7 +41,7 @@ var StructureQueryHelper;
     StructureQueryHelper.updateStructure = updateStructure;
     function updateStructureObject(obj, selection, label) {
         var s = Sel.unionStructure(selection);
-        obj.label = "" + (label || 'Selection');
+        obj.label = "".concat(label || 'Selection');
         obj.description = Structure.elementDescription(s);
         obj.data = s;
     }

package/lib/mol-plugin-state/helpers/structure-query.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"structure-query.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/helpers/structure-query.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAW,SAAS,EAAE,kBAAkB,IAAI,GAAG,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACxG,OAAO,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,yCAAyC,CAAC;AAGlE,OAAO,EAAE,oBAAoB,EAAE,CAAC;AAChC,IAAU,oBAAoB,CA6C7B;AA7CD,WAAU,oBAAoB;IAS1B,SAAgB,WAAW,CAAC,KAAiB,EAAE,KAA0B,EAAE,SAAoB;QAC3F,IAAI,KAAK,CAAC,gBAAgB,KAAK,SAAS;YAAE,OAAO,KAAK,CAAC;QACvD,IAAI,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE;YAClB,OAAO,CAAC,CAAC,KAAK,CAAC,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;SACjE;QACD,OAAO,KAAK,CAAC,UAAU,KAAK,KAAK,CAAC;IACtC,CAAC;IANe,gCAAW,cAM1B,CAAA;IAED,SAAgB,MAAM,CAAC,SAAoB,EAAE,KAA0B;QACnE,IAAM,MAAM,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACjD,IAAM,UAAU,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;QACzE,IAAM,QAAQ,GAAG,OAAO,CAAM,UAAU,CAAC,CAAC;QAE1C,OAAO,EAAE,MAAM,QAAA,EAAE,UAAU,YAAA,EAAE,QAAQ,UAAA,EAAE,iBAAiB,EAAE,SAAS,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;IACvG,CAAC;IANe,2BAAM,SAMrB,CAAA;IAED,SAAgB,GAAG,CAAC,KAAiB,EAAE,SAAoB;QACvD,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAFe,wBAAG,MAElB,CAAA;IAED,SAAgB,YAAY,CAAC,SAAoB,EAAE,KAA0B;QACzE,IAAM,KAAK,GAAG,MAAM,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,EAAE,KAAK,OAAA,EAAE,SAAS,EAAE,GAAG,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,CAAC;IACvD,CAAC;IAHe,iCAAY,eAG3B,CAAA;IAED,SAAgB,eAAe,CAAC,KAAiB,EAAE,SAAoB;QACnE,KAAK,CAAC,gBAAgB,GAAG,SAAS,CAAC;QACnC,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAHe,oCAAe,kBAG9B,CAAA;IAED,SAAgB,qBAAqB,CAAC,GAA0B,EAAE,SAAc,EAAE,KAAc;QAC5F,IAAM,CAAC,GAAG,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC;QACxC,GAAG,CAAC,KAAK,GAAG,UAAG,KAAK,IAAI,WAAW,CAAE,CAAC;QACtC,GAAG,CAAC,WAAW,GAAG,SAAS,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QAClD,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC;IACjB,CAAC;IALe,0CAAqB,wBAKpC,CAAA;AACL,CAAC,EA7CS,oBAAoB,KAApB,oBAAoB,QA6C7B"}

package/lib/mol-plugin-state/helpers/structure-selection-query.js CHANGED Viewed

@@ -531,8 +531,8 @@ export function ResidueQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
     if (priority === void 0) { priority = 0; }
     var description = names.length === 1 && !StandardResidues.has(names[0])
-        ? "[" + names[0] + "] " + label
-        : label + " (" + names.join(', ') + ")";
+        ? "[".concat(names[0], "] ").concat(label)
+        : "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'residue-test': MS.core.set.has([MS.set.apply(MS, names), MS.ammp('auth_comp_id')])
@@ -541,7 +541,7 @@ export function ResidueQuery(_a, category, priority) {
 }
 export function ElementSymbolQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = label + " (" + names.join(', ') + ")";
+    var description = "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'atom-test': MS.core.set.has([MS.set.apply(MS, names), MS.acp('elementSymbol')])
@@ -550,8 +550,8 @@ export function ElementSymbolQuery(_a, category, priority) {
 }
 export function EntityDescriptionQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = "" + label;
-    return StructureSelectionQuery("" + label, MS.struct.modifier.union([
+    var description = "".concat(label);
+    return StructureSelectionQuery("".concat(label), MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'entity-test': MS.core.list.equal([MS.list.apply(MS, names), MS.ammp('entityDescription')])
         })