molstar 2.3.5 → 2.3.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +176 -176
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +94 -94
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +290 -1
- package/lib/apps/viewer/index.html +94 -94
- package/lib/apps/viewer/index.js +91 -5
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/viewer/index.d.ts +289 -0
- package/lib/commonjs/apps/viewer/index.js +91 -5
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/index.js +0 -0
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/curve.js +2 -2
- package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
- package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/index.js +1 -1
- package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
- package/lib/commonjs/extensions/cellpack/model.js +203 -65
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
- package/lib/commonjs/extensions/cellpack/preset.js +12 -15
- package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/property.js +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
- package/lib/commonjs/extensions/cellpack/representation.js +47 -0
- package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
- package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
- package/lib/commonjs/extensions/cellpack/state.js +234 -27
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
- package/lib/commonjs/extensions/cellpack/util.js +34 -6
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +2 -2
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
- package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
- package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +5 -5
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js +7 -45
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +6 -4
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js +5 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +2 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +12 -12
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/result.js +1 -1
- package/lib/commonjs/mol-io/reader/result.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
- package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
- package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
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- package/lib/servers/model/server/structure-wrapper.js +6 -6
- package/lib/servers/model/server/structure-wrapper.js.map +1 -1
- package/lib/servers/model/server.js +3 -3
- package/lib/servers/model/server.js.map +1 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +4 -4
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +1 -1
- package/lib/servers/model/utils/writer.js +2 -2
- package/lib/servers/model/utils/writer.js.map +1 -1
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- package/lib/servers/volume/pack/format/dsn6.js +1 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +1 -1
- package/lib/servers/volume/pack/main.js +4 -4
- package/lib/servers/volume/pack/main.js.map +1 -1
- package/lib/servers/volume/pack/writer.js +1 -1
- package/lib/servers/volume/pack/writer.js.map +1 -1
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- package/lib/servers/volume/server/api.js.map +1 -1
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- package/lib/servers/volume/server/local-api.js.map +1 -1
- package/lib/servers/volume/server/query/encode.js +3 -3
- package/lib/servers/volume/server/query/encode.js.map +1 -1
- package/lib/servers/volume/server/query/execute.js +5 -5
- package/lib/servers/volume/server/query/execute.js.map +1 -1
- package/lib/servers/volume/server/version.js +1 -1
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- package/lib/servers/volume/server/web-schema.js.map +1 -1
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- package/lib/tests/browser/font-atlas.js +1 -1
- package/lib/tests/browser/font-atlas.js.map +1 -1
- package/lib/tests/browser/index.html +36 -36
- package/lib/tests/browser/render-shape.js +1 -1
- package/lib/tests/browser/render-shape.js.map +1 -1
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- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js +0 -40
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -116
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/commonjs/mol-script/util/residue-list.d.ts +0 -7
- package/lib/commonjs/mol-script/util/residue-list.js +0 -63
- package/lib/commonjs/mol-script/util/residue-list.js.map +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js +0 -2
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/mol-model/structure/model/properties/utils/guess-element.js +0 -36
- package/lib/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/mol-model-formats/structure/mol copy.d.ts +0 -17
- package/lib/mol-model-formats/structure/mol copy.js +0 -86
- package/lib/mol-model-formats/structure/mol copy.js.map +0 -1
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.d.ts +0 -0
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -112
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/mol-script/util/residue-list.d.ts +0 -7
- package/lib/mol-script/util/residue-list.js +0 -59
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@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
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import { ThemeDataContext } from '../../mol-theme/theme';
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export declare const EntityIdColorThemeParams: {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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list: {
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kind: "interpolate" | "set";
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}>, "colors">>;
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export declare type EntityIdColorThemeParams = typeof EntityIdColorThemeParams;
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export declare function getEntityIdColorThemeParams(ctx: ThemeDataContext): {
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
|
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}>, "colors">>;
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}>, "generate">>;
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};
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export declare function EntityIdColorTheme(ctx: ThemeDataContext, props: PD.Values<EntityIdColorThemeParams>): ColorTheme<EntityIdColorThemeParams>;
|
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export declare const EntityIdColorThemeProvider: ColorTheme.Provider<EntityIdColorThemeParams, 'entity-id'>;
|
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@@ -21,7 +21,7 @@ function getEntityIdColorThemeParams(ctx) {
|
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}
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exports.getEntityIdColorThemeParams = getEntityIdColorThemeParams;
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function key(entityId, modelIndex) {
|
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return entityId
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+
return "".concat(entityId, "|").concat(modelIndex);
|
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}
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function getEntityIdSerialMap(structure) {
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var map = new Map();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"entity-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAmG;AACnG,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,iEAAiE,CAAC;AAEzE,QAAA,wBAAwB,6BAC9B,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,2BAA2B,CAAC,GAAqB;IAC7D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,gCAAwB,CAAC,CAAC;IAClD,OAAO,MAAM,CAAC;AAClB,CAAC;AAHD,kEAGC;AAED,SAAS,GAAG,CAAC,QAAgB,EAAE,UAAkB;IAC7C,
|
|
1
|
+
{"version":3,"file":"entity-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAmG;AACnG,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,iEAAiE,CAAC;AAEzE,QAAA,wBAAwB,6BAC9B,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,2BAA2B,CAAC,GAAqB;IAC7D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,gCAAwB,CAAC,CAAC;IAClD,OAAO,MAAM,CAAC;AAClB,CAAC;AAHD,kEAGC;AAED,SAAS,GAAG,CAAC,QAAgB,EAAE,UAAkB;IAC7C,OAAO,UAAG,QAAQ,cAAI,UAAU,CAAE,CAAC;AACvC,CAAC;AAED,SAAS,oBAAoB,CAAC,SAAoB;IAC9C,IAAM,GAAG,GAAG,IAAI,GAAG,EAAkB,CAAC;IACtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,SAAS,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAC/C,IAAA,eAAe,GAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,MAAM,gBAA/C,CAAgD;QACvE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,eAAe,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxD,IAAM,CAAC,GAAG,GAAG,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YAC3C,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;gBAAE,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;SACzC;KACJ;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAgB,kBAAkB,CAAC,GAAqB,EAAE,KAA0C;IAChG,IAAI,KAAoB,CAAC;IACzB,IAAI,MAA6C,CAAC;IAElD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAM,GAAC,GAAG,4BAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAC/D,IAAM,mBAAiB,GAAG,oBAAoB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAEnE,IAAM,YAAU,GAAG,KAAK,CAAC,IAAI,CAAC,mBAAiB,CAAC,IAAI,EAAE,CAAC,CAAC;QACxD,IAAM,UAAU,GAAG,UAAC,CAAS,IAAK,OAAA,YAAU,CAAC,CAAC,CAAC,EAAb,CAAa,CAAC;QAEhD,IAAM,SAAO,GAAG,IAAA,oBAAU,EAAC,mBAAiB,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,UAAU,YAAA,EAAE,CAAC,CAAC;QAC1E,MAAM,GAAG,SAAO,CAAC,MAAM,CAAC;QAExB,KAAK,GAAG,UAAC,QAAkB;YACvB,IAAI,MAAM,GAAuB,SAAS,CAAC;YAC3C,IAAI,4BAAgB,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE;gBACxC,IAAM,MAAM,GAAG,+BAAmB,CAAC,KAAK,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC;gBACnE,IAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;gBAC1E,IAAM,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;gBAClC,MAAM,GAAG,mBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACrC;iBAAM,IAAI,gBAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;gBAClC,GAAC,CAAC,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC;gBACxB,GAAC,CAAC,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;gBACrD,IAAM,MAAM,GAAG,+BAAmB,CAAC,KAAK,CAAC,eAAe,CAAC,GAAC,CAAC,CAAC;gBAC5D,IAAM,UAAU,GAAG,GAAC,CAAC,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,GAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;gBAC5D,IAAM,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;gBAClC,MAAM,GAAG,mBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACrC;YACD,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,SAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACvE,CAAC,CAAC;KACL;SAAM;QACH,KAAK,GAAG,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC;KAC9B;IAED,OAAO;QACH,OAAO,EAAE,kBAAkB;QAC3B,WAAW,EAAE,OAAO;QACpB,KAAK,OAAA;QACL,KAAK,OAAA;QACL,WAAW,EAAE,WAAW;QACxB,MAAM,QAAA;KACT,CAAC;AACN,CAAC;AA3CD,gDA2CC;AAEY,QAAA,0BAA0B,GAA+D;IAClG,IAAI,EAAE,WAAW;IACjB,KAAK,EAAE,WAAW;IAClB,QAAQ,8BAA2B;IACnC,OAAO,EAAE,kBAAkB;IAC3B,SAAS,EAAE,2BAA2B;IACtC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,gCAAwB,CAAC;IAC5D,YAAY,EAAE,UAAC,GAAqB,IAAK,OAAA,CAAC,CAAC,GAAG,CAAC,SAAS,EAAf,CAAe;CAC3D,CAAC"}
|
|
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
|
|
|
8
8
|
import { ThemeDataContext } from '../../mol-theme/theme';
|
|
9
9
|
export declare const EntitySourceColorThemeParams: {
|
|
10
10
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
11
|
+
list: {
|
|
12
|
+
kind: "interpolate" | "set";
|
|
13
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
14
|
+
};
|
|
15
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
11
16
|
maxCount: number;
|
|
12
17
|
hue: [number, number];
|
|
13
18
|
chroma: [number, number];
|
|
14
19
|
luminance: [number, number];
|
|
15
20
|
clusteringStepCount: number;
|
|
16
21
|
minSampleCount: number;
|
|
17
|
-
}>, "generate"
|
|
18
|
-
list: {
|
|
19
|
-
kind: "set" | "interpolate";
|
|
20
|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
21
|
-
};
|
|
22
|
-
}>, "colors">>;
|
|
22
|
+
}>, "generate">>;
|
|
23
23
|
};
|
|
24
24
|
export declare type EntitySourceColorThemeParams = typeof EntitySourceColorThemeParams;
|
|
25
25
|
export declare function getEntitySourceColorThemeParams(ctx: ThemeDataContext): {
|
|
26
26
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
27
|
+
list: {
|
|
28
|
+
kind: "interpolate" | "set";
|
|
29
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
30
|
+
};
|
|
31
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
27
32
|
maxCount: number;
|
|
28
33
|
hue: [number, number];
|
|
29
34
|
chroma: [number, number];
|
|
30
35
|
luminance: [number, number];
|
|
31
36
|
clusteringStepCount: number;
|
|
32
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|
minSampleCount: number;
|
|
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|
-
}>, "generate"
|
|
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|
-
list: {
|
|
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|
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kind: "set" | "interpolate";
|
|
36
|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
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|
-
};
|
|
38
|
-
}>, "colors">>;
|
|
38
|
+
}>, "generate">>;
|
|
39
39
|
};
|
|
40
40
|
export declare function EntitySourceColorTheme(ctx: ThemeDataContext, props: PD.Values<EntitySourceColorThemeParams>): ColorTheme<EntitySourceColorThemeParams>;
|
|
41
41
|
export declare const EntitySourceColorThemeProvider: ColorTheme.Provider<EntitySourceColorThemeParams, 'entity-source'>;
|
|
@@ -30,10 +30,10 @@ function getEntitySourceColorThemeParams(ctx) {
|
|
|
30
30
|
}
|
|
31
31
|
exports.getEntitySourceColorThemeParams = getEntitySourceColorThemeParams;
|
|
32
32
|
function modelEntityKey(modelIndex, entityId) {
|
|
33
|
-
return modelIndex
|
|
33
|
+
return "".concat(modelIndex, "|").concat(entityId);
|
|
34
34
|
}
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|
35
35
|
function srcKey(modelIndex, entityId, organism, srcId, plasmid, gene) {
|
|
36
|
-
return modelIndex
|
|
36
|
+
return "".concat(modelIndex, "|").concat(entityId, "|").concat(organism, "|").concat(gene ? gene : (plasmid ? plasmid : srcId));
|
|
37
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|
}
|
|
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38
|
function addSrc(seqToSrcByModelEntity, srcKeySerialMap, modelIndex, model, entity_src, scientific_name, plasmid_name, gene_src_gene) {
|
|
39
39
|
var entity_id = entity_src.entity_id, pdbx_src_id = entity_src.pdbx_src_id, pdbx_beg_seq_num = entity_src.pdbx_beg_seq_num, pdbx_end_seq_num = entity_src.pdbx_end_seq_num;
|
|
@@ -89,8 +89,8 @@ function getLabelTable(srcKeySerialMap) {
|
|
|
89
89
|
return Array.from(srcKeySerialMap.keys()).map(function (v) {
|
|
90
90
|
var vs = v.split('|');
|
|
91
91
|
var organism = vs[2];
|
|
92
|
-
var name = (0, number_1.isInteger)(vs[3]) ? "Unnamed "
|
|
93
|
-
return ""
|
|
92
|
+
var name = (0, number_1.isInteger)(vs[3]) ? "Unnamed ".concat(++unnamedCount) : vs[3];
|
|
93
|
+
return "".concat(name).concat(organism ? " (".concat(organism, ")") : '');
|
|
94
94
|
});
|
|
95
95
|
}
|
|
96
96
|
function EntitySourceColorTheme(ctx, props) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"entity-source.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-source.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAA+F;AAC/F,8CAA6C;AAG7C,oEAAwE;AAIxE,wDAA4E;AAE5E,gDAAkD;AAClD,oDAA8E;AAC9E,iEAAsE;AAEtE,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,uHAAuH,CAAC;AAE/H,QAAA,4BAA4B,6BAClC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,+BAA+B,CAAC,GAAqB;IACjE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,oCAA4B,CAAC,CAAC;IACtD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,eAAe,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC/F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,0EAYC;AAED,SAAS,cAAc,CAAC,UAAkB,EAAE,QAAgB;IACxD,
|
|
1
|
+
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@@ -8,35 +8,35 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
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import { ThemeDataContext } from '../theme';
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export declare const IllustrativeColorThemeParams: {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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colors: import("../../mol-util/color/color").ColorListEntry[];
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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hue: [number, number];
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}>, "colors">>;
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}>, "generate">>;
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asymId: PD.Select<"label" | "auth">;
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export declare type IllustrativeColorThemeParams = typeof IllustrativeColorThemeParams;
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export declare function getIllustrativeColorThemeParams(ctx: ThemeDataContext): {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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};
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}>, "colors">>;
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}>, "generate">>;
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asymId: PD.Select<"label" | "auth">;
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};
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export declare function IllustrativeColorTheme(ctx: ThemeDataContext, props: PD.Values<IllustrativeColorThemeParams>): ColorTheme<IllustrativeColorThemeParams>;
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import { ThemeDataContext } from '../../mol-theme/theme';
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export declare const ModelIndexColorThemeParams: {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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luminance: [number, number];
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}>, "generate"
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list: {
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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}>, "generate">>;
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export declare type ModelIndexColorThemeParams = typeof ModelIndexColorThemeParams;
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export declare function getModelIndexColorThemeParams(ctx: ThemeDataContext): {
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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}>, "generate"
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list: {
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};
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}>, "colors">>;
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}>, "generate">>;
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};
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export declare function ModelIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<ModelIndexColorThemeParams>): ColorTheme<ModelIndexColorThemeParams>;
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export declare const ModelIndexColorThemeProvider: ColorTheme.Provider<ModelIndexColorThemeParams, 'model-index'>;
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import { ThemeDataContext } from '../theme';
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export declare const OperatorHklColorThemeParams: {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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list: {
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kind: "interpolate" | "set";
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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maxCount: number;
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hue: [number, number];
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chroma: [number, number];
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luminance: [number, number];
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clusteringStepCount: number;
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}>, "generate"
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list: {
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kind: "set" | "interpolate";
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors">>;
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}>, "generate">>;
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};
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export declare type OperatorHklColorThemeParams = typeof OperatorHklColorThemeParams;
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export declare function getOperatorHklColorThemeParams(ctx: ThemeDataContext): {
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palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
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list: {
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kind: "interpolate" | "set";
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colors: import("../../mol-util/color/color").ColorListEntry[];
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};
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}>, "colors"> | PD.NamedParams<PD.Normalize<{
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maxCount: number;
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hue: [number, number];
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luminance: [number, number];
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minSampleCount: number;
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|
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}>, "generate"
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list: {
|
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|
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kind: "set" | "interpolate";
|
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colors: import("../../mol-util/color/color").ColorListEntry[];
|
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|
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};
|
|
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|
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}>, "colors">>;
|
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|
+
}>, "generate">>;
|
|
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|
};
|
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|
export declare function OperatorHklColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorHklColorThemeParams>): ColorTheme<OperatorHklColorThemeParams>;
|
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|
export declare const OperatorHklColorThemeProvider: ColorTheme.Provider<OperatorHklColorThemeParams, 'operator-hkl'>;
|
|
@@ -30,7 +30,7 @@ function getOperatorHklColorThemeParams(ctx) {
|
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|
exports.getOperatorHklColorThemeParams = getOperatorHklColorThemeParams;
|
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|
var hklOffset = 10000;
|
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|
function hklKey(hkl) {
|
|
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|
-
return hkl.map(function (v) { return
|
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+
return hkl.map(function (v) { return "".concat(v + hklOffset).padStart(5, '0'); }).join('');
|
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|
}
|
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|
function hklKeySplit(key) {
|
|
36
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|
var len = (0, number_1.integerDigitCount)(hklOffset, 0);
|
|
@@ -67,7 +67,7 @@ function OperatorHklColorTheme(ctx, props) {
|
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67
67
|
if (labelTable_1[i] === undefined)
|
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|
labelTable_1[i] = label;
|
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else
|
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|
-
labelTable_1[i] += ", "
|
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|
+
labelTable_1[i] += ", ".concat(label);
|
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|
});
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|
var labelOptions = {
|
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minLabel: formatHkl(min),
|
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"operator-hkl.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/operator-hkl.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAA6C;AAC7C,uDAA8E;AAG9E,oEAAwE;AAExE,wDAA4E;AAG5E,gDAA0D;AAC1D,oDAA8E;AAE9E,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,yEAAyE,CAAC;AAEjF,QAAA,2BAA2B,6BACjC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,8BAA8B,CAAC,GAAqB;IAChE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,mCAA2B,CAAC,CAAC;IACrD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,uBAAuB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC5F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,wEAYC;AAED,IAAM,SAAS,GAAG,KAAK,CAAC;AAExB,SAAS,MAAM,CAAC,GAAS;IACrB,OAAO,GAAG,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,
|
|
1
|
+
{"version":3,"file":"operator-hkl.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/operator-hkl.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAA6C;AAC7C,uDAA8E;AAG9E,oEAAwE;AAExE,wDAA4E;AAG5E,gDAA0D;AAC1D,oDAA8E;AAE9E,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,yEAAyE,CAAC;AAEjF,QAAA,2BAA2B,6BACjC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,8BAA8B,CAAC,GAAqB;IAChE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,mCAA2B,CAAC,CAAC;IACrD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,uBAAuB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC5F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,wEAYC;AAED,IAAM,SAAS,GAAG,KAAK,CAAC;AAExB,SAAS,MAAM,CAAC,GAAS;IACrB,OAAO,GAAG,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,UAAG,CAAC,GAAG,SAAS,CAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,EAAnC,CAAmC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;AACtE,CAAC;AAED,SAAS,WAAW,CAAC,GAAW;IAC5B,IAAM,GAAG,GAAG,IAAA,0BAAiB,EAAC,SAAS,EAAE,CAAC,CAAC,CAAC;IAC5C,IAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IACvC,IAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IACzC,IAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IAC/C,OAAO,CAAC,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,SAAS,CAAS,CAAC;AACjE,CAAC;AAED,SAAS,SAAS,CAAC,GAAS;IACxB,OAAO,GAAG,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;AACxC,CAAC;AAED,SAAS,uBAAuB,CAAC,SAAoB;IACjD,IAAM,GAAG,GAAG,IAAI,GAAG,EAAkB,CAAC;IACtC,IAAM,GAAG,GAAG,IAAI,GAAG,EAAU,CAAC;IAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,SAAS,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACtD,IAAM,CAAC,GAAG,MAAM,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC/D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;KACd;IACD,IAAM,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;IAC5C,GAAG,CAAC,OAAO,CAAC,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,EAApB,CAAoB,CAAC,CAAC;IACvC,IAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAChC,IAAM,GAAG,GAAG,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC;IAC7C,OAAO,EAAE,GAAG,KAAA,EAAE,GAAG,KAAA,EAAE,GAAG,KAAA,EAAE,CAAC;AAC7B,CAAC;AAED,SAAgB,qBAAqB,CAAC,GAAqB,EAAE,KAA6C;IACtG,IAAI,KAAoB,CAAC;IACzB,IAAI,MAA6C,CAAC;IAElD,IAAI,GAAG,CAAC,SAAS,EAAE;QACT,IAAA,KAAoB,uBAAuB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,EAA7D,GAAG,SAAA,EAAE,GAAG,SAAA,EAAE,KAAG,SAAgD,CAAC;QAEtE,IAAM,YAAU,GAAa,EAAE,CAAC;QAChC,KAAG,CAAC,OAAO,CAAC,UAAC,CAAC,EAAE,CAAC;YACb,IAAM,CAAC,GAAG,CAAC,GAAG,KAAG,CAAC,IAAI,CAAC;YACvB,IAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC;YACxC,IAAI,YAAU,CAAC,CAAC,CAAC,KAAK,SAAS;gBAAE,YAAU,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;;gBAClD,YAAU,CAAC,CAAC,CAAC,IAAI,YAAK,KAAK,CAAE,CAAC;QACvC,CAAC,CAAC,CAAC;QAEH,IAAM,YAAY,GAAG;YACjB,QAAQ,EAAE,SAAS,CAAC,GAAG,CAAC;YACxB,QAAQ,EAAE,SAAS,CAAC,GAAG,CAAC;YACxB,UAAU,EAAE,UAAC,CAAS,IAAK,OAAA,YAAU,CAAC,CAAC,CAAC,EAAb,CAAa;SAC3C,CAAC;QAEF,IAAM,SAAO,GAAG,IAAA,oBAAU,EAAC,KAAG,CAAC,IAAI,EAAE,KAAK,EAAE,YAAY,CAAC,CAAC;QAC1D,MAAM,GAAG,SAAO,CAAC,MAAM,CAAC;QAExB,KAAK,GAAG,UAAC,QAAkB;YACvB,IAAI,MAAM,GAAuB,SAAS,CAAC;YAC3C,IAAI,4BAAgB,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE;gBACxC,IAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;gBAC1D,MAAM,GAAG,KAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACvB;iBAAM,IAAI,gBAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;gBAClC,IAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;gBAC3D,MAAM,GAAG,KAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACvB;YACD,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,SAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACvE,CAAC,CAAC;KACL;SAAM;QACH,KAAK,GAAG,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC;KAC9B;IAED,OAAO;QACH,OAAO,EAAE,qBAAqB;QAC9B,WAAW,EAAE,UAAU;QACvB,KAAK,OAAA;QACL,KAAK,OAAA;QACL,WAAW,EAAE,WAAW;QACxB,MAAM,QAAA;KACT,CAAC;AACN,CAAC;AA/CD,sDA+CC;AAEY,QAAA,6BAA6B,GAAqE;IAC3G,IAAI,EAAE,cAAc;IACpB,KAAK,EAAE,cAAc;IACrB,QAAQ,2BAA8B;IACtC,OAAO,EAAE,qBAAqB;IAC9B,SAAS,EAAE,8BAA8B;IACzC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,mCAA2B,CAAC;IAC/D,YAAY,EAAE,UAAC,GAAqB,IAAK,OAAA,CAAC,CAAC,GAAG,CAAC,SAAS,EAAf,CAAe;CAC3D,CAAC"}
|
|
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
|
|
|
8
8
|
import { ThemeDataContext } from '../theme';
|
|
9
9
|
export declare const OperatorNameColorThemeParams: {
|
|
10
10
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
11
|
+
list: {
|
|
12
|
+
kind: "interpolate" | "set";
|
|
13
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
14
|
+
};
|
|
15
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
11
16
|
maxCount: number;
|
|
12
17
|
hue: [number, number];
|
|
13
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|
chroma: [number, number];
|
|
14
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|
luminance: [number, number];
|
|
15
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|
clusteringStepCount: number;
|
|
16
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|
minSampleCount: number;
|
|
17
|
-
}>, "generate"
|
|
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|
-
list: {
|
|
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|
-
kind: "set" | "interpolate";
|
|
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|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
21
|
-
};
|
|
22
|
-
}>, "colors">>;
|
|
22
|
+
}>, "generate">>;
|
|
23
23
|
};
|
|
24
24
|
export declare type OperatorNameColorThemeParams = typeof OperatorNameColorThemeParams;
|
|
25
25
|
export declare function getOperatorNameColorThemeParams(ctx: ThemeDataContext): {
|
|
26
26
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
27
|
+
list: {
|
|
28
|
+
kind: "interpolate" | "set";
|
|
29
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
30
|
+
};
|
|
31
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
27
32
|
maxCount: number;
|
|
28
33
|
hue: [number, number];
|
|
29
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|
chroma: [number, number];
|
|
30
35
|
luminance: [number, number];
|
|
31
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|
clusteringStepCount: number;
|
|
32
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|
minSampleCount: number;
|
|
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|
-
}>, "generate"
|
|
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|
-
list: {
|
|
35
|
-
kind: "set" | "interpolate";
|
|
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|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
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|
-
};
|
|
38
|
-
}>, "colors">>;
|
|
38
|
+
}>, "generate">>;
|
|
39
39
|
};
|
|
40
40
|
export declare function OperatorNameColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorNameColorThemeParams>): ColorTheme<OperatorNameColorThemeParams>;
|
|
41
41
|
export declare const OperatorNameColorThemeProvider: ColorTheme.Provider<OperatorNameColorThemeParams, 'operator-name'>;
|
|
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
|
|
|
8
8
|
import { ThemeDataContext } from '../../mol-theme/theme';
|
|
9
9
|
export declare const PolymerIdColorThemeParams: {
|
|
10
10
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
11
|
+
list: {
|
|
12
|
+
kind: "interpolate" | "set";
|
|
13
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
14
|
+
};
|
|
15
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
11
16
|
maxCount: number;
|
|
12
17
|
hue: [number, number];
|
|
13
18
|
chroma: [number, number];
|
|
14
19
|
luminance: [number, number];
|
|
15
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|
clusteringStepCount: number;
|
|
16
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|
minSampleCount: number;
|
|
17
|
-
}>, "generate"
|
|
18
|
-
list: {
|
|
19
|
-
kind: "set" | "interpolate";
|
|
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|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
21
|
-
};
|
|
22
|
-
}>, "colors">>;
|
|
22
|
+
}>, "generate">>;
|
|
23
23
|
};
|
|
24
24
|
export declare type PolymerIdColorThemeParams = typeof PolymerIdColorThemeParams;
|
|
25
25
|
export declare function getPolymerIdColorThemeParams(ctx: ThemeDataContext): {
|
|
26
26
|
palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
|
|
27
|
+
list: {
|
|
28
|
+
kind: "interpolate" | "set";
|
|
29
|
+
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
30
|
+
};
|
|
31
|
+
}>, "colors"> | PD.NamedParams<PD.Normalize<{
|
|
27
32
|
maxCount: number;
|
|
28
33
|
hue: [number, number];
|
|
29
34
|
chroma: [number, number];
|
|
30
35
|
luminance: [number, number];
|
|
31
36
|
clusteringStepCount: number;
|
|
32
37
|
minSampleCount: number;
|
|
33
|
-
}>, "generate"
|
|
34
|
-
list: {
|
|
35
|
-
kind: "set" | "interpolate";
|
|
36
|
-
colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
37
|
-
};
|
|
38
|
-
}>, "colors">>;
|
|
38
|
+
}>, "generate">>;
|
|
39
39
|
};
|
|
40
40
|
export declare function PolymerIdColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIdColorThemeParams>): ColorTheme<PolymerIdColorThemeParams>;
|
|
41
41
|
export declare const PolymerIdColorThemeProvider: ColorTheme.Provider<PolymerIdColorThemeParams, 'polymer-id'>;
|