npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"accessible-surface-area.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,2GAA8I;AAE9I,kHAAiI;AACjI,mDAAyD;AACzD,uDAAyD;AACzD,6EAA4F;AAC5F,+GAAwI;AACxI,sEAAoF;AAEvE,QAAA,qBAAqB,GAAG,yBAAc,CAAC,MAAM,CAAgD;IACtG,IAAI,EAAE,uCAAuC;IAC7C,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE;IAC5C,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEAwCL;YAvCW,cAAQ,GAAG,uDAA6B,CAAA;YAExC,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO;oBACrC,OAAO,0BAA0B,CAAC,IAAI,CAAC,CAAC;gBAC5C,CAAC;aACJ,CAAA;;QAgCL,CAAC;QA9BG,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,mCAAwB,CAAC,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAEjE,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,GAAG,CAAC,iEAAuC,CAAC,CAAC;YACzG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC7D,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAChD,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;QACxD,CAAC;QAED,4BAAU,GAAV;YACI,mCAAwB,CAAC,gBAAgB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAEpE,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,MAAM,CAAC,iEAAuC,CAAC,CAAC;YAC5G,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAChE,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;YACnD,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;QAC3D,CAAC;QACL,cAAC;IAAD,CAAC,AAxCK,CAAc,yBAAc,CAAC,OAAO,EAwCzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC;AAEH,EAAE;AAEF,SAAS,0BAA0B,CAAC,IAAU;IAC1C,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc,EAAE;QAC9B,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO;QAEvC,IAAM,qBAAqB,GAAG,uDAA6B,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;QACtF,IAAI,CAAC,qBAAqB,IAAI,IAAI,CAAC,SAAS,CAAC,yBAAyB,CAAC,YAAY,CAAC,uDAA6B,CAAC,UAAU,CAAC;YAAE,OAAO;QAE9H,IAAA,gBAAc,GAAK,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,eAAtC,CAAuC;QACrD,IAAA,MAAI,GAAyB,qBAAqB,KAA9C,EAAE,oBAAkB,GAAK,qBAAqB,mBAA1B,CAA2B;QAC3D,IAAM,MAAI,GAAG,IAAI,GAAG,EAAU,CAAC;QAC/B,IAAI,iBAAe,GAAG,CAAC,CAAC;gCAEX,OAAO,EAAE,IAAI;YACd,IAAA,QAAQ,GAAK,IAAI,SAAT,CAAU;YAE1B,gBAAU,CAAC,OAAO,CAAC,OAAO,EAAE,UAAA,GAAG;gBAC3B,IAAM,GAAG,GAAG,oBAAkB,CAAC,gBAAc,CAAC,IAAI,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;gBACpE,IAAI,GAAG,KAAK,CAAC,CAAC,IAAI,CAAC,MAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;oBAC9B,iBAAe,IAAI,MAAI,CAAC,GAAG,CAAC,CAAC;oBAC7B,MAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;iBACjB;YACL,CAAC,CAAC,CAAC;;QATP,KAAgC,UAAa,EAAb,KAAA,IAAI,CAAC,QAAQ,EAAb,cAAa,EAAb,IAAa;YAAlC,IAAA,WAAiB,EAAf,OAAO,aAAA,EAAE,IAAI,UAAA;oBAAb,OAAO,EAAE,IAAI;SAUzB;QACD,IAAI,MAAI,CAAC,IAAI,KAAK,CAAC;YAAE,OAAO;QAC5B,IAAM,YAAY,GAAG,kBAAW,MAAI,CAAC,IAAI,cAAI,MAAI,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,cAAW,CAAC;QAEnG,OAAO,kCAA2B,YAAY,eAAK,iBAAe,CAAC,OAAO,CAAC,CAAC,CAAC,wBAAqB,CAAC;KAEtG;SAAM,IAAI,IAAI,CAAC,IAAI,KAAK,gBAAgB,EAAE;QACvC,IAAM,qBAAqB,GAAG,uDAA6B,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;QACtF,IAAI,CAAC,qBAAqB,IAAI,IAAI,CAAC,SAAS,CAAC,yBAAyB,CAAC,YAAY,CAAC,uDAA6B,CAAC,UAAU,CAAC;YAAE,OAAO;QAEtI,OAAO,oEAA6D,IAAA,gBAAQ,EAAC,qBAAqB,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,wBAAqB,CAAC;KAC5I;AACL,CAAC;AAED,EAAE;AAEF,IAAM,QAAQ,GAAG,IAAA,mDAAuB,EAAC,yBAAyB,EAAE,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;IACzF,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC;QAC7B,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;YACrB,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC;gBAC3B,YAAY,EAAE,0BAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,0BAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,EAAE,WAAW,CAAC,CAAC;gBACvE,cAAc,EAAE,sDAA4B,CAAC,QAAQ,CAAC,MAAM,EAAE;aACjE,CAAC;SACL,CAAC;KACL,CAAC;CACL,CAAC,EAAE;IACA,WAAW,EAAE,iCAAiC;IAC9C,QAAQ,EAAE,sDAA0B,CAAC,OAAO;IAC5C,sBAAsB,EAAE,UAAC,GAAG,EAAE,SAAS;QACnC,OAAO,uDAA6B,CAAC,MAAM,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAChE,CAAC;CACJ,CAAC,CAAC;AAEH,IAAM,YAAY,GAAG,IAAA,mDAAuB,EAAC,6BAA6B,EAAE,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;IACjG,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC;QAC7B,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;YACrB,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC;gBAC3B,YAAY,EAAE,0BAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,0BAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,EAAE,WAAW,CAAC,C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package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js CHANGED Viewed

@@ -66,11 +66,11 @@ exports.Interactions = behavior_1.PluginBehavior.create({
                                         groupLabels.push((0, common_1.featureGroupLabel)(group));
                                 }
                                 if (typeLabels.length)
-                                    label.push("<small>Types</small> " + typeLabels.join(', '));
+                                    label.push("<small>Types</small> ".concat(typeLabels.join(', ')));
                                 if (groupLabels.length)
-                                    label.push("<small>Groups</small> " + groupLabels.join(', '));
+                                    label.push("<small>Groups</small> ".concat(groupLabels.join(', ')));
                                 if (label.length)
-                                    labels.push("Interaction Feature: " + label.join(' | '));
+                                    labels.push("Interaction Feature: ".concat(label.join(' | ')));
                             }
                             return labels.length ? labels.join('<br/>') : undefined;
                         default: return void 0;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"interactions.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/interactions.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,qFAA4F;AAE5F,sDAA0D;AAC1D,mEAA4E;AAC5E,gFAAwF;AACxF,mDAAyD;AACzD,sFAAkH;AAElH,uDAA4D;AAC5D,oGAAoH;AACpH,qGAA0H;AAE7G,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,4BAA4B;IAClC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,cAAc,EAAE;IACjC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA0FL;YAzFW,cAAQ,GAAG,mCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,0BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,QAAQ,GAAG,YAAY,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCAC3D,IAAI,CAAC,QAAQ;oCAAE,SAAS;gCAExB,IAAM,UAAU,GAAa,EAAE,CAAC;gCAChC,IAAM,WAAW,GAAa,EAAE,CAAC;gCACjC,IAAM,KAAK,GAAa,EAAE,CAAC;gCAE3B,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCAChC,IAAA,KAAK,GAAkD,QAAQ,MAA1D,EAAE,MAAM,GAA0C,QAAQ,OAAlD,EAAE,KAAwC,QAAQ,cAAb,EAAlB,OAAO,aAAA,EAAE,OAAO,aAAE,CAAc;gCACxE,KAAK,IAAI,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;oCAC3D,IAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;oCACrB,IAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;oCACtB,IAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;oCACxB,IAAI,IAAI;wCAAE,UAAU,CAAC,IAAI,CAAC,IAAA,yBAAgB,EAAC,IAAI,CAAC,CAAC,CAAC;oCAClD,IAAI,KAAK;wCAAE,WAAW,CAAC,IAAI,CAAC,IAAA,0BAAiB,EAAC,KAAK,CAAC,CAAC,CAAC;iCACzD;gCAED,IAAI,UAAU,CAAC,MAAM;oCAAE,KAAK,CAAC,IAAI,CAAC,+BAAwB,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC,CAAC;gCACnF,IAAI,WAAW,CAAC,MAAM;oCAAE,KAAK,CAAC,IAAI,CAAC,gCAAyB,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC,CAAC;gCACtF,IAAI,KAAK,CAAC,MAAM;oCAAE,MAAM,CAAC,IAAI,CAAC,+BAAwB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAE,CAAC,CAAC;6BAC9E;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QA0BL,CAAC;QAvFW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QAoDD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,GAAG,CAAC,oDAAiC,CAAC,CAAC;YACnG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC7D,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,iDAAkC,CAAC,CAAC;QACvF,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,MAAM,CAAC,oDAAiC,CAAC,CAAC;YACtG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAChE,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,iDAAkC,CAAC,CAAC;QAC1F,CAAC;QACL,cAAC;IAAD,CAAC,AA1FK,CAAc,yBAAc,CAAC,OAAO,EA0FzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js CHANGED Viewed

@@ -54,7 +54,7 @@ exports.ValenceModel = behavior_1.PluginBehavior.create({
                                 var idealGeometry = vm.idealGeometry[idx];
                                 var implicitH = vm.implicitH[idx];
                                 var totalH = vm.totalH[idx];
-                                labels.push("Valence Model: <small>Charge</small> " + charge + " | <small>Ideal Geometry</small> " + (0, geometry_1.geometryLabel)(idealGeometry) + " | <small>Implicit H</small> " + implicitH + " | <small>Total H</small> " + totalH);
+                                labels.push("Valence Model: <small>Charge</small> ".concat(charge, " | <small>Ideal Geometry</small> ").concat((0, geometry_1.geometryLabel)(idealGeometry), " | <small>Implicit H</small> ").concat(implicitH, " | <small>Total H</small> ").concat(totalH));
                             }
                             return labels.length ? labels.join('<br/>') : undefined;
                         default: return void 0;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"valence-model.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,uFAA6F;AAE7F,mEAA4E;AAC5E,sDAA0D;AAC1D,gEAAiF;AACjF,mDAAyD;AACzD,uFAA2F;AAC3F,uDAA4D;AAE/C,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,6BAA6B;IACnC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE;IAClC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA4EL;YA3EW,cAAQ,GAAG,oCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,4BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,EAAE,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCACvC,IAAI,CAAC,EAAE;oCAAE,SAAS;gCAElB,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCACxC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAC9B,IAAM,aAAa,GAAG,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;gCAC5C,IAAM,SAAS,GAAG,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;gCACpC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAE9B,MAAM,CAAC,IAAI,CAAC,~~0CAAwC,~~MAAM,~~yCAAoC~~,IAAA,wBAAa,EAAC,aAAa,CAAC,~~qCAAgC~~,SAAS,~~kCAA6B~~,~~MAAQ~~,CAAC,CAAC;6BAC7M;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QAsBL,CAAC;QAzEW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QA0CD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACjE,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACpE,CAAC;QACL,cAAC;IAAD,CAAC,AA5EK,CAAc,yBAAc,CAAC,OAAO,EA4EzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}
1	+ {"version":3,"file":"valence-model.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,uFAA6F;AAE7F,mEAA4E;AAC5E,sDAA0D;AAC1D,gEAAiF;AACjF,mDAAyD;AACzD,uFAA2F;AAC3F,uDAA4D;AAE/C,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,6BAA6B;IACnC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE;IAClC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA4EL;YA3EW,cAAQ,GAAG,oCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,4BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,EAAE,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCACvC,IAAI,CAAC,EAAE;oCAAE,SAAS;gCAElB,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCACxC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAC9B,IAAM,aAAa,GAAG,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;gCAC5C,IAAM,SAAS,GAAG,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;gCACpC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAE9B,MAAM,CAAC,IAAI,CAAC,+CAAwC,MAAM,8CAAoC,IAAA,wBAAa,EAAC,aAAa,CAAC,0CAAgC,SAAS,uCAA6B,MAAM,CAAE,CAAC,CAAC;6BAC7M;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QAsBL,CAAC;QAzEW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QA0CD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACjE,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACpE,CAAC;QACL,cAAC;IAAD,CAAC,AA5EK,CAAc,yBAAc,CAAC,OAAO,EA4EzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}

package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare const HighlightLoci: import("../../../mol-state/transformer").Sta
         hoverHighlightOnly: Binding;
         hoverHighlightOnlyExtend: Binding;
     }>;
-    ignore: PD.Value<("every-loci" | "empty-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci" | "volume-loci" | "isosurface-loci" | "cell-loci")[]>;
+    ignore: PD.Value<("empty-loci" | "cell-loci" | "every-loci" | "isosurface-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci" | "volume-loci")[]>;
     preferAtoms: PD.BooleanParam;
     mark: PD.BooleanParam;
 }>>;
@@ -25,7 +25,7 @@ export declare const SelectLoci: import("../../../mol-state/transformer").StateT
         clickDeselect: Binding;
         clickDeselectAllOnEmpty: Binding;
     }>;
-    ignore: PD.Value<("every-loci" | "empty-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci" | "volume-loci" | "isosurface-loci" | "cell-loci")[]>;
+    ignore: PD.Value<("empty-loci" | "cell-loci" | "every-loci" | "isosurface-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci" | "volume-loci")[]>;
     preferAtoms: PD.BooleanParam;
     mark: PD.BooleanParam;
 }>>;

package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js CHANGED Viewed

@@ -25,7 +25,7 @@ var StructureFocusRepresentationParams = function (plugin) {
         expandRadius: param_definition_1.ParamDefinition.Numeric(5, { min: 1, max: 10, step: 1 }),
         targetParams: param_definition_1.ParamDefinition.Group(reprParams, {
             label: 'Target',
-            customDefault: (0, structure_representation_params_1.createStructureRepresentationParams)(plugin, void 0, { type: 'ball-and-stick', size: 'physical', typeParams: { sizeFactor: 0.26, alpha: 0.51 } })
+            customDefault: (0, structure_representation_params_1.createStructureRepresentationParams)(plugin, void 0, { type: 'ball-and-stick', size: 'physical', typeParams: { sizeFactor: 0.26, alpha: 0.51, adjustCylinderLength: true } })
         }),
         surroundingsParams: param_definition_1.ParamDefinition.Group(reprParams, {
             label: 'Surroundings',
@@ -62,7 +62,7 @@ var StructureFocusRepresentationBehavior = /** @class */ (function (_super) {
         return _this;
     }
     Object.defineProperty(StructureFocusRepresentationBehavior.prototype, "surrLabel", {
-        get: function () { return "[Focus] Surroundings (" + this.params.expandRadius + " \u00C5)"; },
+        get: function () { return "[Focus] Surroundings (".concat(this.params.expandRadius, " \u00C5)"); },
         enumerable: false,
         configurable: true
     });

package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"structure-focus-representation.js","sourceRoot":"","sources":["../../../../../../src/mol-plugin/behavior/dynamic/selection/structure-focus-representation.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,kGAAuH;AACvH,iGAAiH;AACjH,6DAAmE;AACnE,wHAA2H;AAE3H,sEAA0E;AAC1E,8CAAmD;AACnD,mEAAiF;AACjF,mDAAwF;AACxF,mDAAuD;AACvD,0EAA8E;AAC9E,8CAAmD;AAGnD,IAAM,kCAAkC,GAAG,UAAC,MAAqB;IAC7D,IAAM,UAAU,GAAG,4BAAe,CAAC,cAAc,CAAC,yBAAyB,CAAC,UAAU,CAAC,MAAO,CAAC,KAAK,CAAC,EAAE,MAAM,CAAc,CAAC;IAC5H,OAAO;QACH,YAAY,EAAE,kCAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC;QACzD,YAAY,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YAC/B,KAAK,EAAE,QAAQ;YACf,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,oBAAoB,EAAE,IAAI,EAAE,EAAE,CAAC;SAC9L,CAAC;QACF,kBAAkB,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YACrC,KAAK,EAAE,cAAc;YACrB,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,EAAE,CAAC;SACrJ,CAAC;QACF,SAAS,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YAC5B,KAAK,EAAE,mBAAmB;YAC1B,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE;gBAC/D,IAAI,EAAE,iDAAkC;gBACxC,KAAK,EAAE,oDAAiC;gBACxC,IAAI,EAAE,gBAAS,CAAC,OAAO,CAAC,OAAO;aAClC,CAAC;SACL,CAAC;QACF,UAAU,EAAE,kCAAE,CAAC,WAAW,CAAC,eAAe,EAAE,kCAAE,CAAC,cAAc,CAAC,eAAe,CAAC,CAAC;QAC/E,6BAA6B,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,gBAAgB,EAAE,WAAW,EAAE,4DAA4D,EAAE,CAAC;QACxJ,eAAe,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;KACrC,CAAC;AACN,CAAC,CAAC;AAEF,IAAM,eAAe,GAAG,CAAC,QAAiB,EAAE,cAAuB,EAAE,cAAuB,CAAC,CAAC;AAI9F,IAAY,gCAMX;AAND,WAAY,gCAAgC;IACxC,4EAAwC,CAAA;IACxC,8EAA0C,CAAA;IAC1C,wEAAoC,CAAA;IACpC,0EAAsC,CAAA;IACtC,iFAA6C,CAAA;AACjD,CAAC,EANW,gCAAgC,GAAhC,wCAAgC,KAAhC,wCAAgC,QAM3C;AAED,IAAM,MAAM,GAA0C,IAAI,GAAG,CAAC,CAAC,gCAAgC,CAAC,SAAS,EAAE,gCAAgC,CAAC,UAAU,EAAE,gCAAgC,CAAC,OAAO,EAAE,gCAAgC,CAAC,QAAQ,EAAE,gCAAgC,CAAC,WAAW,CAAC,CAAC,CAAC;AAE5R;IAAmD,qEAAiE;IAApH;QAAA,qEAuKC;QAxFW,mBAAa,GAAsC,KAAK,CAAC,CAAC;;IAwFtE,CAAC;IAtKG,sBAAY,2DAAS;aAArB,cAA0B,OAAO,gCAAyB,IAAI,CAAC,MAAM,CAAC,YAAY,aAAK,CAAC,CAAC,CAAC;;;OAAA;IAElF,4DAAa,GAArB,UAAsB,UAAgC;QAClD,uDACO,IAAI,CAAC,MAAM,CAAC,YAAY,KAC3B,IAAI,EAAE;gBACF,IAAI,EAAE,UAAU,CAAC,IAAI,CAAC,IAAI;gBAC1B,MAAM,kDAAO,UAAU,CAAC,IAAI,CAAC,MAAM,KAAE,eAAe,EAAE,IAAI,CAAC,MAAM,CAAC,eAAe,GAAE;aACtF,IACH;IACN,CAAC;IAEO,0DAAW,GAAnB,UAAoB,IAA2D;;QAC3E,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC;QACxD,IAAM,OAAO,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC;QAC9B,IAAM,IAAI,GAAG,0BAAc,CAAC,uBAAuB,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;QAEtF,aAAa;QACb,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAC,EAAE;YACnD,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAC,GAAG,OAAO;iBACrD,EAAE,CAAC,IAAI,CAAC;iBACR,KAAK,CAAC,4BAAe,CAAC,KAAK,CAAC,4BAA4B,EACrD,EAAE,MAAM,EAAE,4BAAgB,CAAC,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,gBAAgB,EAAE,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC;SACzI;QAED,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAC,EAAE;YACjD,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAC,GAAG,OAAO;iBACnD,EAAE,CAAC,IAAI,CAAC;iBACR,KAAK,CAAC,4BAAe,CAAC,KAAK,CAAC,gCAAgC,EACzD,EAAE,UAAU,EAAE,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,SAAS,EAAE,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC;SACvI;QAED,IAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC;QAE1C,kBAAkB;QAClB,IAAI,UAAU,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,UAAU,CAAC,EAAE;YACzF,IAAI,CAAC,gCAAgC,CAAC,UAAU,CAAC,GAAG,OAAO;iBACtD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAE,CAAC;iBACrD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC;SACjL;QAED,IAAI,UAAU,CAAC,OAAO,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,QAAQ,CAAC,EAAE;YAC7F,IAAI,CAAC,gCAAgC,CAAC,QAAQ,CAAC,GAAG,OAAO;iBACpD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAE,CAAC;iBACnD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,CAAC,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG,CAAC;SACrL;QAED,IAAI,UAAU,CAAC,OAAO,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,WAAW,CAAC,IAAI,IAAI,CAAC,GAAG,IAAI,iDAAkC,CAAC,YAAY,CAAC,MAAA,IAAI,CAAC,GAAG,0CAAE,IAAI,CAAC,EAAE;YAC/K,IAAI,CAAC,gCAAgC,CAAC,WAAW,CAAC,GAAG,OAAO;iBACvD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAE,CAAC;iBACnD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,WAAW,EAAE,CAAC,CAAC,GAAG,CAAC;SAC3J;QAED,OAAO,EAAE,KAAK,OAAA,EAAE,OAAO,SAAA,EAAE,IAAI,MAAA,EAAE,CAAC;IACpC,CAAC;IAEO,oDAAK,GAAb,UAAc,IAAwB;QAClC,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAI,CAAC,aAAa,GAAG,KAAK,CAAC,CAAC;QAE5B,IAAM,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC,OAAO,CAAC,gCAAgC,CAAC,SAAS,CAAC,CAAC,CAAC;QAC/H,IAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts CHANGED Viewed

@@ -49,13 +49,13 @@ export declare namespace VolumeStreaming {
         channelParams?: DefaultChannelParams;
     }): {
         entry: PD.Mapped<PD.NamedParams<PD.Values<{
-            view: PD.Mapped<PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
+            view: PD.Mapped<PD.NamedParams<PD.Normalize<{
                 radius: number;
                 selectionDetailLevel: number;
                 isSelection: boolean;
                 bottomLeft: Vec3;
                 topRight: Vec3;
-            }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+            }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
                 bottomLeft: Vec3;
                 topRight: Vec3;
             }>, "box"> | PD.NamedParams<PD.Normalize<{
@@ -81,13 +81,13 @@ export declare namespace VolumeStreaming {
         structure?: Structure;
         channelParams?: DefaultChannelParams;
     }): {
-        view: PD.Mapped<PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
+        view: PD.Mapped<PD.NamedParams<PD.Normalize<{
             radius: number;
             selectionDetailLevel: number;
             isSelection: boolean;
             bottomLeft: Vec3;
             topRight: Vec3;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
             bottomLeft: Vec3;
             topRight: Vec3;
         }>, "box"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js CHANGED Viewed

@@ -85,13 +85,13 @@ exports.VolumeStreaming = VolumeStreaming;
                 // Show selection-box if available and cell otherwise.
                 'auto': param_definition_1.ParamDefinition.Group({
                     radius: param_definition_1.ParamDefinition.Numeric(5, { min: 0, max: 50, step: 0.5 }, { description: 'Radius in \u212B within which the volume is shown.' }),
-                    selectionDetailLevel: param_definition_1.ParamDefinition.Select(Math.min(6, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, i + 1 + " [ " + (Math.pow(p.maxVoxels, 1 / 3) | 0) + "^3 cells ]"]; }), { label: 'Selection Detail', description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
+                    selectionDetailLevel: param_definition_1.ParamDefinition.Select(Math.min(6, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, "".concat(i + 1, " [ ").concat(Math.pow(p.maxVoxels, 1 / 3) | 0, "^3 cells ]")]; }), { label: 'Selection Detail', description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
                     isSelection: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }),
                     bottomLeft: param_definition_1.ParamDefinition.Vec3(box.min, {}, { isHidden: true }),
                     topRight: param_definition_1.ParamDefinition.Vec3(box.max, {}, { isHidden: true }),
                 }, { description: 'Box around focused element.', isFlat: true })
             }, { options: VolumeStreaming.ViewTypeOptions, description: 'Controls what of the volume is displayed. "Off" hides the volume alltogether. "Bounded box" shows the volume inside the given box. "Around Interaction" shows the volume around the focused element/atom. "Whole Structure" shows the volume for the whole structure.' }),
-            detailLevel: param_definition_1.ParamDefinition.Select(Math.min(3, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, i + 1 + " [ " + (Math.pow(p.maxVoxels, 1 / 3) | 0) + "^3 cells ]"]; }), { description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
+            detailLevel: param_definition_1.ParamDefinition.Select(Math.min(3, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, "".concat(i + 1, " [ ").concat(Math.pow(p.maxVoxels, 1 / 3) | 0, "^3 cells ]")]; }), { description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
             channels: info.kind === 'em'
                 ? param_definition_1.ParamDefinition.Group({
                     'em': channelParam('EM', (0, color_1.Color)(0x638F8F), info.emDefaultContourLevel || volume_1.Volume.IsoValue.relative(1), info.header.sampling[0].valuesInfo[0], channelParams['em'])
@@ -135,12 +135,12 @@ exports.VolumeStreaming = VolumeStreaming;
                 return (0, tslib_1.__generator)(this, function (_a) {
                     switch (_a.label) {
                         case 0:
-                            url = (0, url_1.urlCombine)(this.data.serverUrl, this.info.kind + "/" + this.info.dataId.toLowerCase());
+                            url = (0, url_1.urlCombine)(this.data.serverUrl, "".concat(this.info.kind, "/").concat(this.info.dataId.toLowerCase()));
                             if (box) {
                                 a = box.min, b = box.max;
                                 url += "/box"
-                                    + ("/" + a.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','))
-                                    + ("/" + b.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','));
+                                    + "/".concat(a.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','))
+                                    + "/".concat(b.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','));
                             }
                             else {
                                 url += "/cell";
@@ -149,7 +149,7 @@ exports.VolumeStreaming = VolumeStreaming;
                             if (this.params.entry.params.view.name === 'auto' && this.params.entry.params.view.params.isSelection) {
                                 detail = this.params.entry.params.view.params.selectionDetailLevel;
                             }
-                            url += "?detail=" + detail;
+                            url += "?detail=".concat(detail);
                             entry = lru_cache_1.LRUCache.get(this.cache, url);
                             if (entry)
                                 return [2 /*return*/, entry.data];

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts CHANGED Viewed

@@ -9,12 +9,12 @@ import { Volume } from '../../../../mol-model/volume';
 import { Structure } from '../../../../mol-model/structure';
 declare const VolumeServerInfo_base: {
     new (data: VolumeServerInfo.Data, props?: {
-        /** Precision data the server can show. */
-        label: string;
+        label: string; /** Precision data the server can show. */
         description?: string | undefined;
     } | undefined): {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;
@@ -23,6 +23,7 @@ declare const VolumeServerInfo_base: {
     is(obj?: import("../../../../mol-state/object").StateObject<any, import("../../../../mol-state/object").StateObject.Type<any>> | undefined): obj is {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts CHANGED Viewed

@@ -29,22 +29,22 @@ declare const CreateVolumeStreamingInfo: StateTransformer<SO.Molecule.Structure,
     serverUrl: string;
     entries: PD.Normalize<PD.Values<{
         dataId: PD.Text<string>;
-        source: PD.Mapped<PD.NamedParams<PD.Normalize<{
+        source: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "x-ray"> | PD.NamedParams<PD.Normalize<{
             isoValue: any;
-        }>, "em"> | PD.NamedParams<PD.Normalize<unknown>, "x-ray">>;
+        }>, "em">>;
     }>>[];
 }>>;
 export { CreateVolumeStreamingBehavior };
 declare type CreateVolumeStreamingBehavior = typeof CreateVolumeStreamingBehavior;
 declare const CreateVolumeStreamingBehavior: StateTransformer<VolumeServerInfo, VolumeStreaming, PD.Normalize<{
     entry: PD.NamedParams<PD.Values<{
-        view: PD.Mapped<PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
+        view: PD.Mapped<PD.NamedParams<PD.Normalize<{
             radius: any;
             selectionDetailLevel: any;
             isSelection: any;
             bottomLeft: any;
             topRight: any;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{
             bottomLeft: any;
             topRight: any;
         }>, "box"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js CHANGED Viewed

@@ -97,7 +97,7 @@ exports.InitVolumeStreaming = mol_state_1.StateAction.build({
                     return [3 /*break*/, 8];
                 case 7:
                     e_1 = _a.sent();
-                    console.info("Could not get map info for " + emdbId + ": " + e_1);
+                    console.info("Could not get map info for ".concat(emdbId, ": ").concat(e_1));
                     return [3 /*break*/, 9];
                 case 8:
                     addEntry(entries, params.method, emdbId, contourLevel || 0);
@@ -114,7 +114,7 @@ exports.InitVolumeStreaming = mol_state_1.StateAction.build({
                     return [3 /*break*/, 14];
                 case 13:
                     e_2 = _a.sent();
-                    console.info("Could not get map info for " + dataId + ": " + e_2);
+                    console.info("Could not get map info for ".concat(dataId, ": ").concat(e_2));
                     return [3 /*break*/, 15];
                 case 14:
                     addEntry(entries, params.method, dataId, emDefaultContourLevel || 0);
@@ -227,7 +227,7 @@ var CreateVolumeStreamingInfo = objects_1.PluginStateTransform.BuiltIn({
                         return [4 /*yield*/, taskCtx.update('Getting server header...')];
                     case 2:
                         _a.sent();
-                        return [4 /*yield*/, plugin.fetch({ url: (0, url_1.urlCombine)(params.serverUrl, e.source.name + "/" + dataId.toLocaleLowerCase()), type: 'json' }).runInContext(taskCtx)];
+                        return [4 /*yield*/, plugin.fetch({ url: (0, url_1.urlCombine)(params.serverUrl, "".concat(e.source.name, "/").concat(dataId.toLocaleLowerCase())), type: 'json' }).runInContext(taskCtx)];
                     case 3:
                         header = _a.sent();
                         entries.push({
@@ -246,7 +246,7 @@ var CreateVolumeStreamingInfo = objects_1.PluginStateTransform.BuiltIn({
                             entries: entries,
                             structure: a.data
                         };
-                        return [2 /*return*/, new model_1.VolumeServerInfo(data, { label: 'Volume Server', description: "" + entries.map(function (e) { return e.dataId; }).join(', ') })];
+                        return [2 /*return*/, new model_1.VolumeServerInfo(data, { label: 'Volume Server', description: "".concat(entries.map(function (e) { return e.dataId; }).join(', ')) })];
                 }
             });
         }); });
@@ -343,7 +343,7 @@ var VolumeStreamingVisual = objects_1.PluginStateTransform.BuiltIn({
                         _c.sent();
                         if (transform)
                             repr.setState({ transform: transform });
-                        return [2 /*return*/, new objects_1.PluginStateObject.Volume.Representation3D({ repr: repr, sourceData: channel.data }, { label: Math.round(channel.isoValue.relativeValue * 100) / 100 + " \u03C3 [" + srcParams.channel + "]" })];
+                        return [2 /*return*/, new objects_1.PluginStateObject.Volume.Representation3D({ repr: repr, sourceData: channel.data }, { label: "".concat(Math.round(channel.isoValue.relativeValue * 100) / 100, " \u03C3 [").concat(srcParams.channel, "]") })];
                 }
             });
         }); });

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js CHANGED Viewed

@@ -81,7 +81,7 @@ function getContourLevelEmdb(plugin, taskCtx, emdbId) {
             switch (_a.label) {
                 case 0:
                     emdbHeaderServer = plugin.config.get(config_1.PluginConfig.VolumeStreaming.EmdbHeaderServer);
-                    return [4 /*yield*/, plugin.fetch({ url: emdbHeaderServer + "/" + emdbId.toUpperCase() + "/header/" + emdbId.toLowerCase() + ".xml", type: 'xml' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "".concat(emdbHeaderServer, "/").concat(emdbId.toUpperCase(), "/header/").concat(emdbId.toLowerCase(), ".xml"), type: 'xml' }).runInContext(taskCtx)];
                 case 1:
                     header = _a.sent();
                     map = header.getElementsByTagName('map')[0];
@@ -101,7 +101,7 @@ function getContourLevelPdbe(plugin, taskCtx, emdbId) {
                 case 0:
                     // TODO: parametrize URL in plugin settings?
                     emdbId = emdbId.toUpperCase();
-                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/emdb/api/entry/map/" + emdbId, type: 'json' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/emdb/api/entry/map/".concat(emdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     header = _e.sent();
                     contours = (_b = (_a = header === null || header === void 0 ? void 0 : header.map) === null || _a === void 0 ? void 0 : _a.contour_list) === null || _b === void 0 ? void 0 : _b.contour;
@@ -124,7 +124,7 @@ function getContourLevelPdbeLegacy(plugin, taskCtx, emdbId) {
                 case 0:
                     // TODO: parametrize URL in plugin settings?
                     emdbId = emdbId.toUpperCase();
-                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/emdb/entry/map/" + emdbId, type: 'json' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/emdb/entry/map/".concat(emdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     header = _d.sent();
                     emdbEntry = header === null || header === void 0 ? void 0 : header[emdbId];
@@ -143,7 +143,7 @@ function getEmdbIds(plugin, taskCtx, pdbId) {
         var summary, summaryEntry, emdbIds, emdb;
         return (0, tslib_1.__generator)(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/" + pdbId, type: 'json' }).runInContext(taskCtx)];
+                case 0: return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/".concat(pdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     summary = _b.sent();
                     summaryEntry = summary === null || summary === void 0 ? void 0 : summary[pdbId];
@@ -151,12 +151,12 @@ function getEmdbIds(plugin, taskCtx, pdbId) {
                     if ((_a = summaryEntry === null || summaryEntry === void 0 ? void 0 : summaryEntry[0]) === null || _a === void 0 ? void 0 : _a.related_structures) {
                         emdb = summaryEntry[0].related_structures.filter(function (s) { return s.resource === 'EMDB' && s.relationship === 'associated EM volume'; });
                         if (!emdb.length) {
-                            throw new Error("No related EMDB entry found for '" + pdbId + "'.");
+                            throw new Error("No related EMDB entry found for '".concat(pdbId, "'."));
                         }
                         emdbIds.push.apply(emdbIds, emdb.map(function (e) { return e.accession; }));
                     }
                     else {
-                        throw new Error("No related EMDB entry found for '" + pdbId + "'.");
+                        throw new Error("No related EMDB entry found for '".concat(pdbId, "'."));
                     }
                     return [2 /*return*/, emdbIds];
             }