molstar 2.3.5 → 2.3.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +176 -176
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +94 -94
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +290 -1
- package/lib/apps/viewer/index.html +94 -94
- package/lib/apps/viewer/index.js +91 -5
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/viewer/index.d.ts +289 -0
- package/lib/commonjs/apps/viewer/index.js +91 -5
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/index.js +0 -0
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/curve.js +2 -2
- package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
- package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/index.js +1 -1
- package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
- package/lib/commonjs/extensions/cellpack/model.js +203 -65
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
- package/lib/commonjs/extensions/cellpack/preset.js +12 -15
- package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/property.js +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
- package/lib/commonjs/extensions/cellpack/representation.js +47 -0
- package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
- package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
- package/lib/commonjs/extensions/cellpack/state.js +234 -27
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
- package/lib/commonjs/extensions/cellpack/util.js +34 -6
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +2 -2
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
- package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
- package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +5 -5
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js +7 -45
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +6 -4
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js +5 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +2 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +12 -12
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/result.js +1 -1
- package/lib/commonjs/mol-io/reader/result.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
- package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
- package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
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- package/lib/servers/model/server/structure-wrapper.js +6 -6
- package/lib/servers/model/server/structure-wrapper.js.map +1 -1
- package/lib/servers/model/server.js +3 -3
- package/lib/servers/model/server.js.map +1 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +4 -4
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +1 -1
- package/lib/servers/model/utils/writer.js +2 -2
- package/lib/servers/model/utils/writer.js.map +1 -1
- package/lib/servers/plugin-state/api-schema.js +2 -2
- package/lib/servers/plugin-state/api-schema.js.map +1 -1
- package/lib/servers/plugin-state/index.js +1 -1
- package/lib/servers/plugin-state/index.js.map +1 -1
- package/lib/servers/volume/pack/format/dsn6.js +1 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +1 -1
- package/lib/servers/volume/pack/main.js +4 -4
- package/lib/servers/volume/pack/main.js.map +1 -1
- package/lib/servers/volume/pack/writer.js +1 -1
- package/lib/servers/volume/pack/writer.js.map +1 -1
- package/lib/servers/volume/pack.js +1 -1
- package/lib/servers/volume/pack.js.map +1 -1
- package/lib/servers/volume/server/api.js +7 -7
- package/lib/servers/volume/server/api.js.map +1 -1
- package/lib/servers/volume/server/local-api.js +1 -1
- package/lib/servers/volume/server/local-api.js.map +1 -1
- package/lib/servers/volume/server/query/encode.js +3 -3
- package/lib/servers/volume/server/query/encode.js.map +1 -1
- package/lib/servers/volume/server/query/execute.js +5 -5
- package/lib/servers/volume/server/query/execute.js.map +1 -1
- package/lib/servers/volume/server/version.js +1 -1
- package/lib/servers/volume/server/version.js.map +1 -1
- package/lib/servers/volume/server/web-api.js +7 -7
- package/lib/servers/volume/server/web-api.js.map +1 -1
- package/lib/servers/volume/server/web-schema.js +6 -6
- package/lib/servers/volume/server/web-schema.js.map +1 -1
- package/lib/servers/volume/server.js +2 -2
- package/lib/servers/volume/server.js.map +1 -1
- package/lib/tests/browser/font-atlas.js +1 -1
- package/lib/tests/browser/font-atlas.js.map +1 -1
- package/lib/tests/browser/index.html +36 -36
- package/lib/tests/browser/render-shape.js +1 -1
- package/lib/tests/browser/render-shape.js.map +1 -1
- package/lib/tests/browser/render-structure.js +1 -1
- package/lib/tests/browser/render-structure.js.map +1 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +158 -155
- package/CHANGELOG.md +0 -181
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js +0 -40
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -116
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/commonjs/mol-script/util/residue-list.d.ts +0 -7
- package/lib/commonjs/mol-script/util/residue-list.js +0 -63
- package/lib/commonjs/mol-script/util/residue-list.js.map +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js +0 -2
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/mol-model/structure/model/properties/utils/guess-element.js +0 -36
- package/lib/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/mol-model-formats/structure/mol copy.d.ts +0 -17
- package/lib/mol-model-formats/structure/mol copy.js +0 -86
- package/lib/mol-model-formats/structure/mol copy.js.map +0 -1
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.d.ts +0 -0
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -112
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/mol-script/util/residue-list.d.ts +0 -7
- package/lib/mol-script/util/residue-list.js +0 -59
- package/lib/mol-script/util/residue-list.js.map +0 -1
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@@ -9,10 +9,10 @@ exports.generate = void 0;
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var string_1 = require("../../../mol-util/string");
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var schema_1 = require("../../../mol-io/reader/cif/schema");
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function header(name, info, moldataImportPath) {
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return "/**\n * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated '"
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return "/**\n * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated '".concat(name, "' schema file. ").concat(info, "\n *\n * @author molstar/ciftools package\n */\n\nimport { Database, Column } from '").concat(moldataImportPath, "/db';\n\nimport Schema = Column.Schema;");
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return "\nexport type "
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return "\nexport type ".concat(name, "_Schema = typeof ").concat(name, "_Schema;\nexport interface ").concat(name, "_Database extends Database<").concat(name, "_Schema> {};");
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function safePropertyString(name) { return name.match(reSafePropertyName) ? name : "'"
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function safePropertyString(name) { return name.match(reSafePropertyName) ? name : "'".concat(name, "'"); }
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function generate(name, info, schema, fields, moldataImportPath, addAliases) {
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}
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return header(name, info, moldataImportPath)
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return "".concat(header(name, info, moldataImportPath), "\n\n").concat(getTypeShorthands(schema, fields), "\n\n").concat(codeLines.join('\n'), "\n").concat(footer(name));
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}
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//# sourceMappingURL=generate.js.map
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{"version":3,"file":"generate.js","sourceRoot":"","sources":["../../../../../src/cli/cifschema/util/generate.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mDAAwD;AACxD,4DAA8D;AAE9D,SAAS,MAAM,CAAC,IAAY,EAAE,IAAY,EAAE,iBAAyB;IACjE,OAAO,
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|
+
{"version":3,"file":"generate.js","sourceRoot":"","sources":["../../../../../src/cli/cifschema/util/generate.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mDAAwD;AACxD,4DAA8D;AAE9D,SAAS,MAAM,CAAC,IAAY,EAAE,IAAY,EAAE,iBAAyB;IACjE,OAAO,yIAGU,IAAI,4BAAkB,IAAI,iGAKX,iBAAiB,4CAEtB,CAAC;AAChC,CAAC;AAED,SAAS,MAAM,CAAC,IAAY;IACxB,OAAO,wBACG,IAAI,8BAAoB,IAAI,wCACvB,IAAI,wCAA8B,IAAI,iBAAc,CAAC;AACxE,CAAC;AAED,SAAS,iBAAiB,CAAC,MAAgB,EAAE,MAAe;IACxD,IAAM,KAAK,GAAG,IAAI,GAAG,EAAU,CAAC;IAChC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,UAAA,KAAK;QACpC,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC;YAAE,OAAO;QAC7B,IAAA,OAAO,GAAK,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,QAAzB,CAA0B;QACzC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,UAAA,UAAU;YACnC,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC;gBAAE,OAAO;YACjD,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC;QAC7D,CAAC,CAAC,CAAC;IACP,CAAC,CAAC,CAAC;IACH,IAAM,UAAU,GAAa,EAAE,CAAC;IAChC,KAAK,CAAC,OAAO,CAAC,UAAA,IAAI;QACd,QAAQ,IAAI,EAAE;YACV,KAAK,KAAK;gBAAE,UAAU,CAAC,IAAI,CAAC,yBAAyB,CAAC,CAAC;gBAAC,MAAM;YAC9D,KAAK,KAAK;gBAAE,UAAU,CAAC,IAAI,CAAC,yBAAyB,CAAC,CAAC;gBAAC,MAAM;YAC9D,KAAK,OAAO;gBAAE,UAAU,CAAC,IAAI,CAAC,6BAA6B,CAAC,CAAC;gBAAC,MAAM;YACpE,KAAK,OAAO;gBAAE,UAAU,CAAC,IAAI,CAAC,6BAA6B,CAAC,CAAC;gBAAC,MAAM;YACpE,KAAK,MAAM;gBAAE,UAAU,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;gBAAC,MAAM;YACvE,KAAK,QAAQ;gBAAE,UAAU,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC;gBAAC,MAAM;YACvE,KAAK,QAAQ;gBAAE,UAAU,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC;gBAAC,MAAM;YACvE,KAAK,MAAM;gBAAE,UAAU,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;gBAAC,MAAM;SACpE;IACL,CAAC,CAAC,CAAC;IACH,OAAO,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AACjC,CAAC;AAED,SAAS,UAAU,CAAC,CAAS;IACzB,QAAQ,CAAC,CAAC,IAAI,EAAE;QACZ,KAAK,KAAK,CAAC,CAAC,OAAO,KAAK,CAAC;QACzB,KAAK,KAAK,CAAC,CAAC,OAAO,KAAK,CAAC;QACzB,KAAK,OAAO,CAAC,CAAC,OAAO,OAAO,CAAC;QAC7B,KAAK,OAAO,CAAC,CAAC,OAAO,OAAO,CAAC;QAC7B,KAAK,MAAM;YACP,OAAO,mBAAY,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC,EAAvB,CAAuB,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,gBAAM,CAAC,CAAC,OAAO,MAAG,CAAC;QAClG,KAAK,QAAQ;YACT,OAAO,iBAAU,CAAC,CAAC,IAAI,eAAK,CAAC,CAAC,OAAO,MAAG,CAAC;QAC7C,KAAK,QAAQ;YACT,OAAO,iBAAU,CAAC,CAAC,MAAM,MAAG,CAAC;QACjC,KAAK,MAAM;YACP,IAAI,CAAC,CAAC,OAAO,KAAK,KAAK,EAAE;gBACrB,OAAO,gBAAS,CAAC,CAAC,SAAS,6BAA0B,CAAC;aACzD;iBAAM,IAAI,CAAC,CAAC,OAAO,KAAK,OAAO,IAAI,CAAC,CAAC,OAAO,KAAK,OAAO,EAAE;gBACvD,OAAO,gBAAS,CAAC,CAAC,SAAS,2BAAwB,CAAC;aACvD;iBAAM;gBACH,OAAO,gBAAS,CAAC,CAAC,SAAS,eAAY,CAAC;aAC3C;KACR;AACL,CAAC;AAED,IAAM,kBAAkB,GAAG,4BAA4B,CAAC;AACxD,SAAS,kBAAkB,CAAC,IAAY,IAAI,OAAO,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,WAAI,IAAI,MAAG,CAAC,CAAC,CAAC;AAEzG,SAAS,GAAG,CAAC,WAAmB,EAAE,WAAmB;IACjD,IAAM,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;IACvC,OAAO;QACH,UAAG,MAAM,QAAK;QACd,UAAG,IAAA,qBAAY,EAAC,WAAW,EAAE,CAAC,EAAE,UAAG,MAAM,QAAK,CAAC,CAAE,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC;QACxE,UAAG,MAAM,QAAK;KACjB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AACjB,CAAC;AAED,SAAgB,QAAQ,CAAC,IAAY,EAAE,IAAY,EAAE,MAAgB,EAAE,MAA0B,EAAE,iBAAyB,EAAE,UAAmB;IAC7I,IAAM,SAAS,GAAa,EAAE,CAAC;IAE/B,IAAI,MAAM,EAAE;QACR,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,UAAA,KAAK;YAC7B,IAAI,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE;gBACxB,IAAM,aAAW,GAAG,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;gBACzC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,UAAA,MAAM;oBACrC,IAAI,CAAC,CAAC,MAAM,IAAI,aAAW,CAAC,OAAO,CAAC,EAAE;wBAClC,OAAO,CAAC,GAAG,CAAC,wBAAiB,KAAK,cAAI,MAAM,0BAAuB,CAAC,CAAC;qBACxE;gBACL,CAAC,CAAC,CAAC;aACN;iBAAM;gBACH,OAAO,CAAC,GAAG,CAAC,2BAAoB,KAAK,0BAAuB,CAAC,CAAC;aACjE;QACL,CAAC,CAAC,CAAC;KACN;IAED,SAAS,CAAC,IAAI,CAAC,uBAAgB,IAAI,gBAAa,CAAC,CAAC;IAClD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,UAAA,KAAK;QACpC,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC;YAAE,OAAO;QAC/B,IAAA,KAA2B,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,EAA7C,WAAW,iBAAA,EAAE,OAAO,aAAyB,CAAC;QACtD,IAAI,WAAW;YAAE,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,CAAC;QACrD,SAAS,CAAC,IAAI,CAAC,cAAO,kBAAkB,CAAC,KAAK,CAAC,QAAK,CAAC,CAAC;QACtD,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,UAAA,UAAU;YACnC,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC;gBAAE,OAAO;YACjD,IAAM,CAAC,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;YAC9B,IAAM,OAAO,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;YAC9B,IAAI,CAAC,CAAC,WAAW;gBAAE,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,CAAC;YACzD,SAAS,CAAC,IAAI,CAAC,kBAAW,kBAAkB,CAAC,UAAU,CAAC,eAAK,OAAO,MAAG,CAAC,CAAC;QAC7E,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC7B,CAAC,CAAC,CAAC;IACH,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAErB,IAAI,UAAU,EAAE;QACZ,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACnB,SAAS,CAAC,IAAI,CAAC,uBAAgB,IAAI,iBAAc,CAAC,CAAC;QACnD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,UAAA,IAAI;YAC9B,IAAA,KAAsB,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,EAApC,KAAK,QAAA,EAAE,UAAU,QAAmB,CAAC;YAC5C,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC;gBAAE,OAAO;YACrC,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC;gBAAE,OAAO;YAEjD,IAAM,eAAe,GAAG,IAAI,GAAG,EAAU,CAAC;YAC1C,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,UAAA,CAAC;gBAC1B,IAAI,CAAC,kBAAS,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC;oBAAE,eAAe,CAAC,GAAG,CAAC,kBAAS,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;YAC/E,CAAC,CAAC,CAAC;YAEH,IAAI,eAAe,CAAC,IAAI,KAAK,CAAC;gBAAE,OAAO;YACvC,SAAS,CAAC,IAAI,CAAC,cAAO,kBAAkB,CAAC,IAAI,CAAC,QAAK,CAAC,CAAC;YACrD,eAAe,CAAC,OAAO,CAAC,UAAA,KAAK;gBACzB,SAAS,CAAC,IAAI,CAAC,mBAAY,KAAK,OAAI,CAAC,CAAC;YAC1C,CAAC,CAAC,CAAC;YACH,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC7B,CAAC,CAAC,CAAC;QACH,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;KACxB;IAED,OAAO,UAAG,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,iBAAiB,CAAC,iBAAO,iBAAiB,CAAC,MAAM,EAAE,MAAM,CAAC,iBAAO,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,eAAK,MAAM,CAAC,IAAI,CAAC,CAAE,CAAC;AAC1I,CAAC;AA3DD,4BA2DC"}
|
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@@ -41,7 +41,7 @@ function mergeFilters() {
|
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filters.forEach(function (filter) {
|
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Object.keys(filter).forEach(function (category) {
|
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|
Object.keys(filter[category]).forEach(function (field) {
|
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-
var key = category
|
|
44
|
+
var key = "".concat(category, ".").concat(field);
|
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|
var value = fields.get(key) || 0;
|
|
46
46
|
fields.set(key, value + 1);
|
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|
});
|
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@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../../../../src/cli/cifschema/util/schema.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAgBH,SAAgB,MAAM,CAAC,WAAmB,IAAY,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAA5F,wBAA4F;AAG5F,SAAgB,MAAM,CAAC,WAAmB,IAAY,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAA5F,wBAA4F;AAG5F,SAAgB,QAAQ,CAAC,WAAmB,IAAc,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAAlG,4BAAkG;AAGlG,SAAgB,QAAQ,CAAC,WAAmB,IAAc,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAAlG,4BAAkG;AAGlG,SAAgB,OAAO,CAAC,MAAgB,EAAE,OAAsB,EAAE,WAAmB;IACjF,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,aAAA,EAAE,MAAM,QAAA,EAAE,OAAO,SAAA,EAAE,CAAC;AAC1D,CAAC;AAFD,0BAEC;AAGD,SAAgB,SAAS,CAAC,MAAc,EAAE,WAAmB;IACzD,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,aAAA,EAAE,MAAM,QAAA,EAAE,CAAC;AACnD,CAAC;AAFD,8BAEC;AAGD,SAAgB,SAAS,CAAC,OAAe,EAAE,IAAY,EAAE,WAAmB;IACxE,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,aAAA,EAAE,OAAO,SAAA,EAAE,IAAI,MAAA,EAAE,CAAC;AAC1D,CAAC;AAFD,8BAEC;AAGD,SAAgB,OAAO,CAAC,OAA0C,EAAE,SAAiB,EAAE,WAAmB;IACtG,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,aAAA,EAAE,SAAS,WAAA,EAAE,OAAO,SAAA,EAAE,CAAC;AAC7D,CAAC;AAFD,0BAEC;AAID,SAAgB,YAAY;IAAC,iBAAoB;SAApB,UAAoB,EAApB,qBAAoB,EAApB,IAAoB;QAApB,4BAAoB;;IAC7C,IAAM,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC;IACzB,IAAM,YAAY,GAAW,EAAE,CAAC;IAChC,IAAM,MAAM,GAAwB,IAAI,GAAG,EAAE,CAAC;IAC9C,OAAO,CAAC,OAAO,CAAC,UAAA,MAAM;QAClB,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,UAAA,QAAQ;YAChC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC,UAAA,KAAK;gBACvC,IAAM,GAAG,
|
|
1
|
+
{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../../../../src/cli/cifschema/util/schema.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAgBH,SAAgB,MAAM,CAAC,WAAmB,IAAY,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAA5F,wBAA4F;AAG5F,SAAgB,MAAM,CAAC,WAAmB,IAAY,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAA5F,wBAA4F;AAG5F,SAAgB,QAAQ,CAAC,WAAmB,IAAc,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAAlG,4BAAkG;AAGlG,SAAgB,QAAQ,CAAC,WAAmB,IAAc,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,aAAA,EAAE,CAAC,CAAC,CAAC;AAAlG,4BAAkG;AAGlG,SAAgB,OAAO,CAAC,MAAgB,EAAE,OAAsB,EAAE,WAAmB;IACjF,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,aAAA,EAAE,MAAM,QAAA,EAAE,OAAO,SAAA,EAAE,CAAC;AAC1D,CAAC;AAFD,0BAEC;AAGD,SAAgB,SAAS,CAAC,MAAc,EAAE,WAAmB;IACzD,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,aAAA,EAAE,MAAM,QAAA,EAAE,CAAC;AACnD,CAAC;AAFD,8BAEC;AAGD,SAAgB,SAAS,CAAC,OAAe,EAAE,IAAY,EAAE,WAAmB;IACxE,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,aAAA,EAAE,OAAO,SAAA,EAAE,IAAI,MAAA,EAAE,CAAC;AAC1D,CAAC;AAFD,8BAEC;AAGD,SAAgB,OAAO,CAAC,OAA0C,EAAE,SAAiB,EAAE,WAAmB;IACtG,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,aAAA,EAAE,SAAS,WAAA,EAAE,OAAO,SAAA,EAAE,CAAC;AAC7D,CAAC;AAFD,0BAEC;AAID,SAAgB,YAAY;IAAC,iBAAoB;SAApB,UAAoB,EAApB,qBAAoB,EAApB,IAAoB;QAApB,4BAAoB;;IAC7C,IAAM,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC;IACzB,IAAM,YAAY,GAAW,EAAE,CAAC;IAChC,IAAM,MAAM,GAAwB,IAAI,GAAG,EAAE,CAAC;IAC9C,OAAO,CAAC,OAAO,CAAC,UAAA,MAAM;QAClB,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,UAAA,QAAQ;YAChC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC,UAAA,KAAK;gBACvC,IAAM,GAAG,GAAG,UAAG,QAAQ,cAAI,KAAK,CAAE,CAAC;gBACnC,IAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;gBACnC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;YAC/B,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAC;IACP,CAAC,CAAC,CAAC;IACH,MAAM,CAAC,OAAO,CAAC,UAAC,CAAC,EAAE,CAAC;QAChB,IAAI,CAAC,KAAK,CAAC;YAAE,OAAO;QACd,IAAA,KAA4B,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,EAAvC,YAAY,QAAA,EAAE,SAAS,QAAgB,CAAC;QAC/C,IAAI,YAAY,IAAI,YAAY,EAAE;YAC9B,YAAY,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC,GAAG,IAAI,CAAC;SAChD;aAAM;YACH,YAAY,CAAC,YAAY,CAAC,GAAG,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC;SACpD;IACL,CAAC,CAAC,CAAC;IACH,OAAO,YAAY,CAAC;AACxB,CAAC;AAvBD,oCAuBC"}
|
|
@@ -23,7 +23,7 @@ function ensureAvailable(path, url) {
|
|
|
23
23
|
case 0:
|
|
24
24
|
if (!(FORCE_DOWNLOAD || !fs.existsSync(path))) return [3 /*break*/, 3];
|
|
25
25
|
name_1 = url.substr(url.lastIndexOf('/') + 1);
|
|
26
|
-
console.log("downloading "
|
|
26
|
+
console.log("downloading ".concat(name_1, "..."));
|
|
27
27
|
return [4 /*yield*/, (0, node_fetch_1.default)(url)];
|
|
28
28
|
case 1:
|
|
29
29
|
data = _d.sent();
|
|
@@ -35,7 +35,7 @@ function ensureAvailable(path, url) {
|
|
|
35
35
|
return [4 /*yield*/, data.text()];
|
|
36
36
|
case 2:
|
|
37
37
|
_b.apply(_a, _c.concat([_d.sent()]));
|
|
38
|
-
console.log("done downloading "
|
|
38
|
+
console.log("done downloading ".concat(name_1));
|
|
39
39
|
_d.label = 3;
|
|
40
40
|
case 3: return [2 /*return*/];
|
|
41
41
|
}
|
|
@@ -74,7 +74,7 @@ function run(out) {
|
|
|
74
74
|
}
|
|
75
75
|
lipidNames = JSON.stringify(lipids.array);
|
|
76
76
|
if (out) {
|
|
77
|
-
output = "/**\n * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated lipid params file. Names extracted from Martini FF lipids itp.\n *\n * @author molstar/lipid-params cli\n */\n\nexport const LipidNames = new Set("
|
|
77
|
+
output = "/**\n * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated lipid params file. Names extracted from Martini FF lipids itp.\n *\n * @author molstar/lipid-params cli\n */\n\nexport const LipidNames = new Set(".concat(lipidNames.replace(/"/g, "'").replace(/,/g, ', '), ");\n");
|
|
78
78
|
fs.writeFileSync(out, output);
|
|
79
79
|
}
|
|
80
80
|
else {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/cli/lipid-params/index.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,8DAAqC;AACrC,kDAAyB;AACzB,sDAA6B;AAC7B,uEAA+B;AAC/B,kDAAqD;AAErD,IAAM,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,2BAA2B,CAAC,CAAC;AAExE,IAAM,mBAAmB,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,EAAE,oBAAoB,CAAC,CAAC;AAC3E,IAAM,kBAAkB,GAAG,iGAAiG,CAAC;AAE7H,SAAe,eAAe,CAAC,IAAY,EAAE,GAAW;;;;;;yBAChD,CAAA,cAAc,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA,EAAtC,wBAAsC;oBAChC,SAAO,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;oBAClD,OAAO,CAAC,GAAG,CAAC,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/cli/lipid-params/index.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,8DAAqC;AACrC,kDAAyB;AACzB,sDAA6B;AAC7B,uEAA+B;AAC/B,kDAAqD;AAErD,IAAM,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,2BAA2B,CAAC,CAAC;AAExE,IAAM,mBAAmB,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,EAAE,oBAAoB,CAAC,CAAC;AAC3E,IAAM,kBAAkB,GAAG,iGAAiG,CAAC;AAE7H,SAAe,eAAe,CAAC,IAAY,EAAE,GAAW;;;;;;yBAChD,CAAA,cAAc,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA,EAAtC,wBAAsC;oBAChC,SAAO,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;oBAClD,OAAO,CAAC,GAAG,CAAC,sBAAe,MAAI,QAAK,CAAC,CAAC;oBACzB,qBAAM,IAAA,oBAAK,EAAC,GAAG,CAAC,EAAA;;oBAAvB,IAAI,GAAG,SAAgB;oBAC7B,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE;wBAC5B,EAAE,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC;qBAC5B;oBACD,KAAA,CAAA,KAAA,EAAE,CAAA,CAAC,aAAa,CAAA;0BAAC,IAAI;oBAAE,qBAAM,IAAI,CAAC,IAAI,EAAE,EAAA;;oBAAxC,wBAAuB,SAAiB,GAAC,CAAC;oBAC1C,OAAO,CAAC,GAAG,CAAC,2BAAoB,MAAI,CAAE,CAAC,CAAC;;;;;;CAE/C;AAED,SAAe,qBAAqB;;;oBAAK,qBAAM,eAAe,CAAC,mBAAmB,EAAE,kBAAkB,CAAC,EAAA;;gBAA9D,SAA8D,CAAC;;;;CAAE;AAE1G,IAAM,WAAW,GAAG,CAAC,MAAM,CAAC,CAAC;AAE7B,SAAe,GAAG,CAAC,GAAW;;;;;wBAC1B,qBAAM,qBAAqB,EAAE,EAAA;;oBAA7B,SAA6B,CAAC;oBACxB,YAAY,GAAG,EAAE,CAAC,YAAY,CAAC,mBAAmB,EAAE,MAAM,CAAC,CAAC;oBAE5D,MAAM,GAAG,qBAAW,CAAC,MAAM,EAAU,CAAC;oBACtC,OAAO,GAAG,6DAA6D,CAAC;oBAG9E,OAAO,CAAC,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,KAAK,IAAI,EAAE;wBACxC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;wBACjD,qBAAW,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;qBACjC;oBAED,WAA2B,EAAX,2BAAW,EAAX,yBAAW,EAAX,IAAW,EAAE;wBAAlB,CAAC;wBACR,qBAAW,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;qBACjC;oBAEK,UAAU,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;oBAEhD,IAAI,GAAG,EAAE;wBACC,MAAM,GAAG,qRAQa,UAAU,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI,CAAC,SACpF,CAAC;wBACM,EAAE,CAAC,aAAa,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;qBACjC;yBAAM;wBACH,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;qBAC3B;;;;;CACJ;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,+CAA+C;CAC/D,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,OAAO,EAAE,IAAI,EAAE;IAC/B,IAAI,EAAE,oEAAoE;CAC7E,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,iBAAiB,EAAE,IAAI,EAAE;IACzC,MAAM,EAAE,YAAY;IACpB,IAAI,EAAE,sCAAsC;CAC/C,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,IAAM,cAAc,GAAG,IAAI,CAAC,aAAa,CAAC;AAE1C,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,UAAA,CAAC;IACvB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;AACrB,CAAC,CAAC,CAAC"}
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mol_util_1.StringBuilder.write(builder, "## <a name=\"".concat(t.id.replace('.', '-'), "\"></a>").concat(t.id, " :: ").concat(typeToString(t.definition.from), " -> ").concat(typeToString(t.definition.to)));
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mol_util_1.StringBuilder.write(builder, "```js\n"
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mol_util_1.StringBuilder.write(builder, "```js\n".concat(JSON.stringify(param_definition_1.ParamDefinition.getDefaultValues(params), null, 2), "\n```"));
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mol_util_1.StringBuilder.write(builder, "* ["
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mol_util_1.StringBuilder.write(builder, "* [".concat(t.id, "](#").concat(t.id.replace('.', '-'), ")"));
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/cli/state-docs/index.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,gFAAuD;AACvD,6CAAgE;AAChE,2CAA+C;AAC/C,kDAAyB;AACzB,uCAAwC;AACxC,oDAAyD;AACzD,oEAAkE;AAElE,sCAAsC;AACtC,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;AAEnC,uBAAuB;AACvB,IAAM,GAAG,GAAG,IAAI,uBAAa,CAAC;IAC1B,SAAS,EAAE,EAAE;CAChB,CAAC,CAAC;AAEH,IAAM,OAAO,GAAG,wBAAa,CAAC,MAAM,EAAE,CAAC;AAEvC,SAAS,YAAY,CAAC,CAAqB;IACvC,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IAChC,OAAO,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,EAAN,CAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AAC1C,CAAC;AAED,SAAS,gBAAgB,CAAC,CAAmB;IACzC,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,
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+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/cli/state-docs/index.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,gFAAuD;AACvD,6CAAgE;AAChE,2CAA+C;AAC/C,kDAAyB;AACzB,uCAAwC;AACxC,oDAAyD;AACzD,oEAAkE;AAElE,sCAAsC;AACtC,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;AAEnC,uBAAuB;AACvB,IAAM,GAAG,GAAG,IAAI,uBAAa,CAAC;IAC1B,SAAS,EAAE,EAAE;CAChB,CAAC,CAAC;AAEH,IAAM,OAAO,GAAG,wBAAa,CAAC,MAAM,EAAE,CAAC;AAEvC,SAAS,YAAY,CAAC,CAAqB;IACvC,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IAChC,OAAO,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,EAAN,CAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AAC1C,CAAC;AAED,SAAS,gBAAgB,CAAC,CAAmB;IACzC,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,uBAAe,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,oBAAS,CAAC,CAAC,EAAE,iBAAO,YAAY,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,iBAAO,YAAY,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,CAAC,CAAE,CAAC,CAAC;IAC7J,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;IAC/B,IAAI,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,WAAW,EAAE;QAClC,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,WAAI,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,WAAW,MAAG,CAAC,CAAC;QACtE,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;KAClC;IACD,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;IAC/B,IAAI,CAAC,CAAC,UAAU,CAAC,MAAM,EAAE;QACrB,IAAM,MAAM,GAAG,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,CAAC;QAChD,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAC;QAC/C,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/B,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,IAAA,qBAAU,EAAC,MAAM,CAAC,CAAC,CAAC;QACjD,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAE/B,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,wBAAwB,CAAC,CAAC;QACvD,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/B,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,iBAAa,IAAI,CAAC,SAAS,CAAC,kCAAe,CAAC,gBAAgB,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC;QACvH,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;KAClC;IACD,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,8BAA8B,CAAC,CAAC;IAC7D,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AACnC,CAAC;AAED,IAAM,YAAY,GAAG,4BAAgB,CAAC,MAAM,EAAE,CAAC;AAE/C,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,2CAA2C,CAAC,CAAC;AAC1E,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAC/B,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAC/B,YAAY,CAAC,OAAO,CAAC,UAAA,CAAC;IAClB,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,aAAM,CAAC,CAAC,EAAE,gBAAM,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,MAAG,CAAC,CAAC;IACxE,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AACnC,CAAC,CAAC,CAAC;AACH,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAC/B,wBAAa,CAAC,KAAK,CAAC,OAAO,EAAE,8BAA8B,CAAC,CAAC;AAC7D,wBAAa,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAC/B,YAAY,CAAC,OAAO,CAAC,UAAA,CAAC,IAAI,OAAA,gBAAgB,CAAC,CAAC,CAAC,EAAnB,CAAmB,CAAC,CAAC;AAE/C,EAAE,CAAC,aAAa,CAAC,0BAA0B,EAAE,wBAAa,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC,CAAC"}
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@@ -18,7 +18,7 @@ function paramInfo(param, offset) {
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case 'number': return 'Numeric value';
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case 'converted': return paramInfo(param.converted, offset);
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case 'conditioned': return getParams(param.conditionParams, offset);
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case 'multi-select': return "Array of "
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case 'multi-select': return "Array of ".concat(oToS(param.options));
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case 'color': return 'Color as 0xrrggbb';
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case 'color-list': return "A list of colors as 0xrrggbb";
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@@ -26,25 +26,25 @@ function paramInfo(param, offset) {
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case 'url': return "URL couple with unique identifier";
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case 'file-list': return "JavaScript FileList Handle";
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case 'select': return "One of "
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case 'select': return "One of ".concat(oToS(param.options));
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case 'data-ref': return "Reference to a computed data value.";
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case 'text': return 'String';
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case 'interval': return "Interval [min, max]";
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case 'group': return "Object with:\n"
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case 'mapped': return "Object { name: string, params: object } where name+params are:\n"
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case 'group': return "Object with:\n".concat(getParams(param.params, offset + 2));
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case 'mapped': return "Object { name: string, params: object } where name+params are:\n".concat(getMapped(param, offset + 2));
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case 'line-graph': return "A list of 2d vectors [xi, yi][]";
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case 'object-list': return "Array of\n"
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case 'object-list': return "Array of\n".concat(paramInfo(param_definition_1.ParamDefinition.Group(param.element), offset + 2));
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// TODO: support more languages
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case 'script': return "An expression in the specified language { language: 'mol-script', expressiong: string }";
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default:
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var _ = param;
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console.warn(_
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+
console.warn("".concat(_, " has no associated UI component"));
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return '';
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}
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function oToS(options) {
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return options.map(function (o) { return "'"
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return options.map(function (o) { return "'".concat(o[0], "'"); }).join(', ');
|
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}
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function offsetS(n) {
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return new Array(n + 1).join(' ') + '- ';
|
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@@ -54,7 +54,7 @@ function getMapped(param, offset) {
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for (var _i = 0, _a = param.select.options; _i < _a.length; _i++) {
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ret += offsetS(offset);
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ret += "**"
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+
ret += "**".concat(n, "**:\n");
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ret += paramInfo(param.map(n), offset + 2);
|
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ret += '\n';
|
|
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}
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@@ -66,12 +66,12 @@ function getParams(params, offset) {
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|
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|
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|
ret += offsetS(offset);
|
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ret += "**"
|
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|
+
ret += "**".concat(k, "**").concat(param.isOptional ? '?:' : ':', " ").concat(paramInfo(param, offset));
|
|
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|
// if (param.defaultValue) {
|
|
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|
// ret += ` = ${JSON.stringify(param.defaultValue)}`;
|
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|
// }
|
|
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|
if (param.description) {
|
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ret += " *("
|
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|
+
ret += " *(".concat(param.description, ")*");
|
|
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|
}
|
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|
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|
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}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"pd-to-md.js","sourceRoot":"","sources":["../../../../src/cli/state-docs/pd-to-md.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,oEAAwE;AAExE,SAAgB,UAAU,CAAC,MAAiB;IACxC,OAAO,SAAS,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;AAChC,CAAC;AAFD,gCAEC;AAED,SAAS,SAAS,CAAC,KAAa,EAAE,MAAc;IAC5C,QAAQ,KAAK,CAAC,IAAI,EAAE;QAChB,KAAK,OAAO,CAAC,CAAC,OAAO,OAAO,CAAC;QAC7B,KAAK,SAAS,CAAC,CAAC,OAAO,YAAY,CAAC;QACpC,KAAK,QAAQ,CAAC,CAAC,OAAO,eAAe,CAAC;QACtC,KAAK,WAAW,CAAC,CAAC,OAAO,SAAS,CAAC,KAAK,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC;QAC5D,KAAK,aAAa,CAAC,CAAC,OAAO,SAAS,CAAC,KAAK,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;QACpE,KAAK,cAAc,CAAC,CAAC,OAAO,
|
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1
|
+
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@@ -26,7 +26,7 @@ function downloadFromPdb(pdb) {
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var parsed;
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return (0, tslib_1.__generator)(this, function (_a) {
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switch (_a.label) {
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case 0: return [4 /*yield*/, (0, helpers_1.downloadCif)("http://www.ebi.ac.uk/pdbe/static/entry/"
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case 0: return [4 /*yield*/, (0, helpers_1.downloadCif)("http://www.ebi.ac.uk/pdbe/static/entry/".concat(pdb, "_updated.cif"), false)];
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case 1:
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parsed = _a.sent();
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return [2 /*return*/, parsed.blocks[0]];
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@@ -55,7 +55,7 @@ function atomLabel(model, aI) {
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var label_asym_id = chains.label_asym_id;
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var rI = residueAtomSegments.index[aI];
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var cI = chainAtomSegments.index[aI];
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return label_asym_id.value(cI)
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return "".concat(label_asym_id.value(cI), " ").concat(label_comp_id.value(aI), " ").concat(label_seq_id.value(rI), " ").concat(label_atom_id.value(aI));
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}
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exports.atomLabel = atomLabel;
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function residueLabel(model, rI) {
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@@ -65,7 +65,7 @@ function residueLabel(model, rI) {
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var label_asym_id = chains.label_asym_id;
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var aI = residueAtomSegments.offsets[rI];
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var cI = chainAtomSegments.index[aI];
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return label_asym_id.value(cI)
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return "".concat(label_asym_id.value(cI), " ").concat(label_comp_id.value(aI), " ").concat(label_seq_id.value(rI));
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}
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exports.residueLabel = residueLabel;
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function printSecStructure(model) {
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@@ -84,7 +84,7 @@ function printSecStructure(model) {
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rI--;
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var e = elements[key[start]];
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if (e.kind !== 'none')
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console.log(e.kind
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console.log("".concat(e.kind, ": ").concat(residueLabel(model, start), " - ").concat(residueLabel(model, rI)));
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rI++;
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}
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}
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@@ -105,7 +105,7 @@ function printBonds(structure, showIntra, showInter) {
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var x = a[bI], y = b[bI];
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if (x >= y)
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continue;
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-
console.log(atomLabel(model, elements[x])
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console.log("".concat(atomLabel(model, elements[x]), " -- ").concat(atomLabel(model, elements[y])));
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}
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}
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}
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@@ -123,12 +123,12 @@ function printBonds(structure, showIntra, showInter) {
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var unitA = pairBonds.unitA, unitB = pairBonds.unitB, edgeCount = pairBonds.edgeCount;
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var uA = structure.unitMap.get(unitA);
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var uB = structure.unitMap.get(unitB);
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console.log(unitA
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console.log("".concat(unitA, " - ").concat(unitB, ": ").concat(edgeCount, " bond(s)"));
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for (var _h = 0, _k = pairBonds.connectedIndices; _h < _k.length; _h++) {
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var aI = _k[_h];
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for (var _l = 0, _m = pairBonds.getEdges(aI); _l < _m.length; _l++) {
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var bond = _m[_l];
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console.log(atomLabel(uA.model, uA.elements[aI])
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console.log("".concat(atomLabel(uA.model, uA.elements[aI]), " -- ").concat(atomLabel(uB.model, uB.elements[bond.indexB])));
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}
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}
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}
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@@ -143,8 +143,8 @@ function printSequence(model) {
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var key = _b[_a];
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var _c = byEntityKey[+key], sequence = _c.sequence, entityId = _c.entityId;
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var seqId = sequence.seqId, compId = sequence.compId;
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console.log(entityId
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console.log(""
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console.log("".concat(entityId, " (").concat(sequence.kind, " ").concat(seqId.value(0), ", ").concat(seqId.value(seqId.rowCount - 1), ") (").concat(compId.value(0), ", ").concat(compId.value(compId.rowCount - 1), ")"));
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console.log("".concat(sequence_1.Sequence.getSequenceString(sequence)));
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}
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console.log();
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}
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@@ -162,7 +162,7 @@ function printRings(structure) {
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}
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if (all.length > 5)
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fps.push('...');
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console.log("Unit "
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console.log("Unit ".concat(unit.id, ", ").concat(all.length, " ring(s), ").concat(byFingerprint.size, " different fingerprint(s).\n ").concat(fps.join(', ')));
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}
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console.log();
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}
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@@ -176,10 +176,10 @@ function printUnits(structure) {
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var elements = unit.elements;
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var size = int_1.OrderedSet.size(elements);
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if (structure_1.Unit.isAtomic(l.unit)) {
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console.log("Atomic unit "
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+
console.log("Atomic unit ".concat(unit.id, " ").concat(unit.conformation.operator.name, ": ").concat(size, " elements"));
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}
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else if (structure_1.Unit.isCoarse(l.unit)) {
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console.log("Coarse unit "
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+
console.log("Coarse unit ".concat(unit.id, " ").concat(unit.conformation.operator.name, " (").concat(structure_1.Unit.isSpheres(l.unit) ? 'spheres' : 'gaussians', "): ").concat(size, " elements."));
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var modelSeq = l.unit.model.sequence;
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for (var j = 0, _j = Math.min(size, 3); j < _j; j++) {
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@@ -189,7 +189,7 @@ function printUnits(structure) {
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|
var compId = modelSeq.byEntityKey[props.entityKey(l)].sequence.compId.value;
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|
for (var e = start; e <= end; e++)
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residues.push(compId(e));
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|
-
console.log(props.asym_id(l)
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|
+
console.log("".concat(props.asym_id(l), ":").concat(start, "-").concat(end, " (").concat(residues.join('-'), ") ").concat(props.asym_id(l), " [").concat(props.x(l).toFixed(2), ", ").concat(props.y(l).toFixed(2), ", ").concat(props.z(l).toFixed(2), "]"));
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}
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|
if (size > 3)
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|
console.log("...");
|
|
@@ -203,10 +203,10 @@ function printSymmetryInfo(model) {
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|
203
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|
if (!symmetry)
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|
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return;
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|
var _a = symmetry.spacegroup.cell, size = _a.size, anglesInRadians = _a.anglesInRadians;
|
|
206
|
-
console.log("Spacegroup: "
|
|
207
|
-
console.log("Assembly names: "
|
|
206
|
+
console.log("Spacegroup: ".concat(symmetry.spacegroup.name, " size: ").concat(linear_algebra_1.Vec3.toString(size), " angles: ").concat(linear_algebra_1.Vec3.toString(anglesInRadians)));
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|
+
console.log("Assembly names: ".concat(symmetry.assemblies.map(function (a) { return a.id; }).join(', ')));
|
|
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208
|
// NCS example: 1auy
|
|
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|
-
console.log("NCS operators: "
|
|
209
|
+
console.log("NCS operators: ".concat(symmetry.ncsOperators && symmetry.ncsOperators.map(function (a) { return a.name; }).join(', ')));
|
|
210
210
|
}
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|
exports.printSymmetryInfo = printSymmetryInfo;
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|
function printModelStats(models) {
|
|
@@ -224,10 +224,10 @@ function printModelStats(models) {
|
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|
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|
case 2:
|
|
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|
m = _a.sent();
|
|
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226
|
if (m.coarseHierarchy.isDefined) {
|
|
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|
-
console.log(m.label
|
|
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|
+
console.log("".concat(m.label, " ").concat(m.modelNum, ": ").concat(m.atomicHierarchy.atoms._rowCount, " atom(s), ").concat(m.coarseHierarchy.spheres.count, " sphere(s), ").concat(m.coarseHierarchy.gaussians.count, " gaussian(s)"));
|
|
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|
}
|
|
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|
else {
|
|
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|
-
console.log(m.label
|
|
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|
+
console.log("".concat(m.label, " ").concat(m.modelNum, ": ").concat(m.atomicHierarchy.atoms._rowCount, " atom(s)"));
|
|
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|
}
|
|
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|
_a.label = 3;
|
|
233
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|
case 3:
|
|
@@ -1 +1 @@
|
|
|
1
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-
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1
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+
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@@ -111,5 +111,5 @@ parser.add_argument('--mesh', {
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111
111
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required: true
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112
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});
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113
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var args = parser.parse_args();
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114
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-
run("https://ds.litemol.org/em/emd-"
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+
run("https://ds.litemol.org/em/emd-".concat(args.emdb, "/cell?detail=4"), args.mesh);
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//# sourceMappingURL=volume.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"volume.js","sourceRoot":"","sources":["../../../../src/cli/structure-info/volume.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,kDAAyB;AACzB,8DAAqC;AACrC,sDAA6B;AAE7B,iDAAgD;AAChD,qCAAwC;AACxC,+CAA8C;AAC9C,wCAA0C;AAC1C,2CAA+C;AAC/C,2CAAsC;AACtC,+DAA8E;AAC9E,+CAA8C;AAC9C,gFAAyG;AAEzG,OAAO,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;AACjC,IAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;AAEpD,SAAe,SAAS,CAAC,GAAW;;;;;wBACpB,qBAAM,IAAA,qBAAW,EAAC,GAAG,EAAE,IAAI,CAAC,EAAA;;oBAAlC,GAAG,GAAG,SAA4B;oBAClC,IAAI,GAAG,SAAG,CAAC,MAAM,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC9C,qBAAM,IAAA,4CAA2B,EAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAA;wBAApD,sBAAO,SAA6C,EAAC;;;;CACxD;AAED,SAAS,KAAK,CAAC,MAAc;IACzB,IAAI,CAAC,4BAAW,CAAC,EAAE,CAAC,MAAM,CAAC,UAAU,CAAC;QAAE,OAAO;IACvC,IAAA,mBAAmB,GAAK,MAAM,CAAC,UAAU,CAAC,IAAI,oBAA3B,CAA4B;IACvD,IAAM,GAAG,GAAG,UAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE,CAAC,CAAC,CAAC;IACjD,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IACjB,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IACnC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC;AAED,SAAe,MAAM,CAAC,MAAc,EAAE,QAAgB;;;;;wBACrC,qBAAM,eAAI,CAAC,MAAM,CAAC,EAAE,EAAE,UAAA,OAAO,IAAI,OAAA,IAAA,uCAA0B,EAAC,EAAE,OAAO,SAAA,EAAE,EAAE,MAAM,EAAE,aAAK,CAAC,WAAW,EAAE,EAAE,EAAE,QAAQ,EAAE,eAAM,CAAC,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,EAAjH,CAAiH,CAAC,CAAC,GAAG,EAAE,EAAA;;oBAAhK,IAAI,GAAG,SAAyJ;oBACtK,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,WAAW,EAAE,EAAE,EAAE,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC;oBAGtD,WAAW,GAAoB,IAAI,YAAxB,EAAE,aAAa,GAAK,IAAI,cAAT,CAAU;oBAEtC,EAAE,GAAG,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC;oBACjC,EAAE,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC;oBAEhC,GAAG,GAAG,wBAAa,CAAC,MAAM,EAAE,CAAC;oBACnC,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE;wBAClC,wBAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBACD,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;wBACpC,wBAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,wBAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,wBAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,wBAAa,CAAC,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBACnD,wBAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBAED,qBAAM,cAAc,CAAC,QAAQ,EAAE,wBAAa,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,EAAA;;oBAA5D,SAA4D,CAAC;;;;;CAChE;AAED,SAAe,GAAG,CAAC,GAAW,EAAE,YAAoB;;;;;wBACjC,qBAAM,SAAS,CAAC,GAAG,CAAC,EAAA;;oBAA7B,MAAM,GAAG,SAAoB;oBACnC,KAAK,CAAC,MAAM,CAAC,CAAC;oBACd,qBAAM,MAAM,CAAC,MAAM,EAAE,YAAY,CAAC,EAAA;;oBAAlC,SAAkC,CAAC;;;;;CACtC;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,6CAA6C;CAC7D,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,EAAE;IAChC,IAAI,EAAE,2BAA2B;CACpC,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE;IAC1B,IAAI,EAAE,eAAe;IACrB,QAAQ,EAAE,IAAI;CACjB,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,GAAG,CAAC,
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1
|
+
{"version":3,"file":"volume.js","sourceRoot":"","sources":["../../../../src/cli/structure-info/volume.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,kDAAyB;AACzB,8DAAqC;AACrC,sDAA6B;AAE7B,iDAAgD;AAChD,qCAAwC;AACxC,+CAA8C;AAC9C,wCAA0C;AAC1C,2CAA+C;AAC/C,2CAAsC;AACtC,+DAA8E;AAC9E,+CAA8C;AAC9C,gFAAyG;AAEzG,OAAO,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;AACjC,IAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;AAEpD,SAAe,SAAS,CAAC,GAAW;;;;;wBACpB,qBAAM,IAAA,qBAAW,EAAC,GAAG,EAAE,IAAI,CAAC,EAAA;;oBAAlC,GAAG,GAAG,SAA4B;oBAClC,IAAI,GAAG,SAAG,CAAC,MAAM,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC9C,qBAAM,IAAA,4CAA2B,EAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAA;wBAApD,sBAAO,SAA6C,EAAC;;;;CACxD;AAED,SAAS,KAAK,CAAC,MAAc;IACzB,IAAI,CAAC,4BAAW,CAAC,EAAE,CAAC,MAAM,CAAC,UAAU,CAAC;QAAE,OAAO;IACvC,IAAA,mBAAmB,GAAK,MAAM,CAAC,UAAU,CAAC,IAAI,oBAA3B,CAA4B;IACvD,IAAM,GAAG,GAAG,UAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE,CAAC,CAAC,CAAC;IACjD,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IACjB,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IACnC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC;AAED,SAAe,MAAM,CAAC,MAAc,EAAE,QAAgB;;;;;wBACrC,qBAAM,eAAI,CAAC,MAAM,CAAC,EAAE,EAAE,UAAA,OAAO,IAAI,OAAA,IAAA,uCAA0B,EAAC,EAAE,OAAO,SAAA,EAAE,EAAE,MAAM,EAAE,aAAK,CAAC,WAAW,EAAE,EAAE,EAAE,QAAQ,EAAE,eAAM,CAAC,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,EAAjH,CAAiH,CAAC,CAAC,GAAG,EAAE,EAAA;;oBAAhK,IAAI,GAAG,SAAyJ;oBACtK,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,WAAW,EAAE,EAAE,EAAE,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC;oBAGtD,WAAW,GAAoB,IAAI,YAAxB,EAAE,aAAa,GAAK,IAAI,cAAT,CAAU;oBAEtC,EAAE,GAAG,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC;oBACjC,EAAE,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC;oBAEhC,GAAG,GAAG,wBAAa,CAAC,MAAM,EAAE,CAAC;oBACnC,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE;wBAClC,wBAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,wBAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,wBAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBACD,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;wBACpC,wBAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,wBAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,wBAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,wBAAa,CAAC,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBACnD,wBAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBAED,qBAAM,cAAc,CAAC,QAAQ,EAAE,wBAAa,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,EAAA;;oBAA5D,SAA4D,CAAC;;;;;CAChE;AAED,SAAe,GAAG,CAAC,GAAW,EAAE,YAAoB;;;;;wBACjC,qBAAM,SAAS,CAAC,GAAG,CAAC,EAAA;;oBAA7B,MAAM,GAAG,SAAoB;oBACnC,KAAK,CAAC,MAAM,CAAC,CAAC;oBACd,qBAAM,MAAM,CAAC,MAAM,EAAE,YAAY,CAAC,EAAA;;oBAAlC,SAAkC,CAAC;;;;;CACtC;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,6CAA6C;CAC7D,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,EAAE;IAChC,IAAI,EAAE,2BAA2B;CACpC,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE;IAC1B,IAAI,EAAE,eAAe;IACrB,QAAQ,EAAE,IAAI;CACjB,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,GAAG,CAAC,wCAAiC,IAAI,CAAC,IAAI,mBAAgB,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC"}
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@@ -26,13 +26,13 @@ function buildStaticSuperposition(plugin, src) {
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26
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case 1:
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27
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if (!(_i < src_1.length)) return [3 /*break*/, 7];
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28
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s = src_1[_i];
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29
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-
return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/"
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29
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+
return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/".concat(s.pdbId, "_updated.cif"), 'mmcif')];
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case 2:
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structure = (_a.sent()).structure;
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return [4 /*yield*/, transform(plugin, structure, s.matrix)];
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case 3:
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_a.sent();
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-
return [4 /*yield*/, plugin.builders.structure.tryCreateComponentFromExpression(structure, chainSelection(s.auth_asym_id), "Chain "
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35
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+
return [4 /*yield*/, plugin.builders.structure.tryCreateComponentFromExpression(structure, chainSelection(s.auth_asym_id), "Chain ".concat(s.auth_asym_id))];
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case 4:
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chain = _a.sent();
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if (!chain) return [3 /*break*/, 6];
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@@ -82,7 +82,7 @@ function dynamicSuperpositionTest(plugin, src, comp_id) {
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82
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case 1:
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83
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if (!(_i < src_2.length)) return [3 /*break*/, 4];
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s = src_2[_i];
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85
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-
return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/"
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85
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+
return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/".concat(s, "_updated.cif"), 'mmcif')];
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86
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case 2:
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87
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|
_a.sent();
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88
88
|
_a.label = 3;
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