npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/mol-model/structure/structure/util/superposition-db-mapping.js CHANGED Viewed

@@ -109,7 +109,7 @@ function buildIndex(structure, index, sI) {
                 var rI = residueOffset[eI];
                 if (!dbName[rI])
                     continue;
-                var key = dbName[rI] + "-" + accession[rI] + "-" + num[rI];
+                var key = "".concat(dbName[rI], "-").concat(accession[rI], "-").concat(num[rI]);
                 if (!index.has(key)) {
                     index.set(key, { key: key, pivots: (_a = {}, _a[sI] = [unit, eI, elements[residueSegment.end]], _a) });
                 }

package/lib/mol-model/structure/structure/util/superposition-db-mapping.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"superposition-db-mapping.js","sourceRoot":"","sources":["../../../../../src/mol-model/structure/structure/util/superposition-db-mapping.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,YAAY,EAAE,MAAM,sDAAsD,CAAC;AACpF,OAAO,EAAE,2BAA2B,EAAE,MAAM,4DAA4D,CAAC;AAWzG,MAAM,UAAU,wCAAwC,CAAC,UAAuB;IAC5E,IAAM,QAAQ,GAAG,IAAI,GAAG,EAAsB,CAAC;IAE/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACxC,UAAU,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,CAAC;KAC1C;IAED,IAAM,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;IAE5C,2CAA2C;IAC3C,IAAM,KAAK,GAAG,SAAS,CAAC,UAAU,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;IAElD,IAAM,GAAG,GAAsB,EAAE,CAAC;IAClC,KAAgB,UAAK,EAAL,eAAK,EAAL,mBAAK,EAAL,IAAK,EAAE;QAAlB,IAAM,CAAC,cAAA;QACF,IAAA,KAAS,iBAAiB,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,EAAnD,CAAC,QAAA,EAAE,CAAC,QAA+C,CAAC;QAC3D,IAAM,SAAS,GAAG,YAAY,CAAC,OAAO,CAAC,EAAE,CAAC,GAAA,EAAE,CAAC,GAAA,EAAE,CAAC,CAAC;QACjD,GAAG,CAAC,IAAI,CAAC,EAAE,SAAS,WAAA,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;KACnD;IAED,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,iBAAiB,CAAC,KAAmB,EAAE,KAAa,EAAE,KAAa,EAAE,CAAS;IACnF,IAAM,EAAE,GAAG,YAAY,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAC3C,IAAM,EAAE,GAAG,YAAY,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAE3C,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,KAAyB,UAAK,EAAL,eAAK,EAAL,mBAAK,EAAL,IAAK,EAAE;QAAnB,IAAA,MAAM,qBAAA;QACf,IAAM,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;QACxB,IAAM,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;QACxB,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC;YAAE,SAAS;QAEvB,IAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAE7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAiB,CAAC;YACpC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAClC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAClC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAElC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAiB,CAAC;YAChC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAClC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAClC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAClC,CAAC,EAAE,CAAC;SACP;KACJ;IAED,OAAO,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;AACpB,CAAC;AAED,SAAS,SAAS,CAAC,CAAS,EAAE,KAAmB;IAC7C,IAAM,cAAc,GAAe,EAAE,CAAC;IACtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxB,cAAc,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE;YAAE,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;KACxD;IAED,KAAyB,UAAK,EAAL,eAAK,EAAL,mBAAK,EAAL,IAAK,EAAE;QAAnB,IAAA,MAAM,qBAAA;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;gBAAE,SAAS;YAEzB,IAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,CAAC;YAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;gBAC5B,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;oBAAE,SAAS;gBAEzB,IAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,CAAC;gBACzC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;aAClE;SACJ;KACJ;IAED,IAAM,GAAG,GAA8C,EAAE,CAAC;IAE1D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxB,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,GAAA,EAAE,KAAK,EAAE,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;KACzD;IAED,2CAA2C;IAC3C,oCAAoC;IACpC,6BAA6B;IAC7B,wCAAwC;IACxC,4CAA4C;IAC5C,wBAAwB;IACxB,0CAA0C;IAC1C,YAAY;IACZ,QAAQ;IAER,2CAA2C;IAC3C,IAAI;IAEJ,OAAO,GAAG,CAAC;AACf,CAAC;AAOD,SAAS,UAAU,CAAC,SAAoB,EAAE,KAA8B,EAAE,EAAU;;IAChF,KAAmB,UAAe,EAAf,KAAA,SAAS,CAAC,KAAK,EAAf,cAAe,EAAf,IAAe,EAAE;QAA/B,IAAM,IAAI,SAAA;QACX,IAAI,IAAI,CAAC,IAAI,mBAAqB;YAAE,SAAS;QAErC,IAAA,QAAQ,GAAY,IAAI,SAAhB,EAAE,KAAK,GAAK,IAAI,MAAT,CAAU;QACzB,IAAS,aAAa,GAAK,KAAK,CAAC,eAAe,CAAC,mBAAmB,QAA9C,CAA+C;QAE7E,IAAM,GAAG,GAAG,2BAA2B,CAAC,QAAQ,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC;QAClE,IAAI,CAAC,GAAG;YAAE,OAAO;QAET,IAAA,MAAM,GAAqB,GAAG,OAAxB,EAAE,SAAS,GAAU,GAAG,UAAb,EAAE,GAAG,GAAK,GAAG,IAAR,CAAS;QAEvC,IAAM,QAAQ,GAAG,YAAY,CAAC,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,eAAe,CAAC,iBAAiB,EAAE,QAAQ,CAAC,CAAC;QACxG,IAAM,UAAU,GAAG,YAAY,CAAC,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,eAAe,CAAC,mBAAmB,EAAE,QAAQ,CAAC,CAAC;QAE5G,OAAO,QAAQ,CAAC,OAAO,EAAE;YACrB,IAAM,YAAY,GAAG,QAAQ,CAAC,IAAI,EAAE,CAAC;YACrC,UAAU,CAAC,UAAU,CAAC,YAAY,CAAC,CAAC;YACpC,OAAO,UAAU,CAAC,OAAO,EAAE;gBACvB,IAAM,cAAc,GAAG,UAAU,CAAC,IAAI,EAAE,CAAC;gBACzC,IAAM,EAAE,GAAG,QAAQ,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC;gBAC1C,IAAM,EAAE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package/lib/mol-model/volume/volume.js CHANGED Viewed

@@ -52,8 +52,8 @@ export var Volume;
         IsoValue.toRelative = toRelative;
         function toString(value) {
             return value.kind === 'relative'
-                ? value.relativeValue.toFixed(2) + " \u03C3"
-                : "" + value.absoluteValue.toPrecision(4);
+                ? "".concat(value.relativeValue.toFixed(2), " \u03C3")
+                : "".concat(value.absoluteValue.toPrecision(4));
         }
         IsoValue.toString = toString;
     })(IsoValue = Volume.IsoValue || (Volume.IsoValue = {}));

package/lib/mol-model/volume/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model-formats/shape/ply.d.ts CHANGED Viewed

@@ -17,14 +17,14 @@ export declare const PlyShapeParams: {
         red: string;
         green: string;
         blue: string;
-    }>, "vertex"> | PD.NamedParams<PD.Normalize<{
+    }>, "material"> | PD.NamedParams<PD.Normalize<{
         red: string;
         green: string;
         blue: string;
-    }>, "material">>;
-    grouping: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "none"> | PD.NamedParams<PD.Normalize<{
-        group: string;
     }>, "vertex">>;
+    grouping: PD.Mapped<PD.NamedParams<PD.Normalize<{
+        group: string;
+    }>, "vertex"> | PD.NamedParams<PD.Normalize<unknown>, "none">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -41,14 +41,14 @@ export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapePr
         red: string;
         green: string;
         blue: string;
-    }>, "vertex"> | PD.NamedParams<PD.Normalize<{
+    }>, "material"> | PD.NamedParams<PD.Normalize<{
         red: string;
         green: string;
         blue: string;
-    }>, "material">>;
-    grouping: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "none"> | PD.NamedParams<PD.Normalize<{
-        group: string;
     }>, "vertex">>;
+    grouping: PD.Mapped<PD.NamedParams<PD.Normalize<{
+        group: string;
+    }>, "vertex"> | PD.NamedParams<PD.Normalize<unknown>, "none">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/mol-model-formats/shape/ply.js CHANGED Viewed

@@ -217,7 +217,7 @@ function createShape(plyFile, mesh, coloring, grouping) {
         return Color.fromRgb(red.value(idx), green.value(idx), blue.value(idx));
     }, function () { return 1; }, // size: constant
     function (groupId) {
-        return label + " " + ids[groupId];
+        return "".concat(label, " ").concat(ids[groupId]);
     });
 }
 function makeShapeGetter() {

package/lib/mol-model-formats/shape/ply.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model-formats/structure/basic/atomic.js CHANGED Viewed

@@ -119,9 +119,9 @@ function createChainOperatorMappingAndSubstituteNames(hierarchy, format) {
         });
         var suffix = entries.suffix.value(i);
         var label = entries.label_asym_id.value(i);
-        labelMap.set("" + label + suffix, { name: label, operator: operator });
+        labelMap.set("".concat(label).concat(suffix), { name: label, operator: operator });
         var auth = entries.auth_asym_id.value(i);
-        authMap.set("" + auth + suffix, auth);
+        authMap.set("".concat(auth).concat(suffix), auth);
     }
     var _a = hierarchy.chains, label_asym_id = _a.label_asym_id, auth_asym_id = _a.auth_asym_id;
     var mappedLabel = new Array(label_asym_id.rowCount);

package/lib/mol-model-formats/structure/basic/atomic.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model-formats/structure/basic/properties.js CHANGED Viewed

@@ -11,7 +11,7 @@ import { Table } from '../../../mol-data/db';
 function getMissingResidues(data) {
     var map = new Map();
     var getKey = function (model_num, asym_id, seq_id) {
-        return model_num + "|" + asym_id + "|" + seq_id;
+        return "".concat(model_num, "|").concat(asym_id, "|").concat(seq_id);
     };
     var c = data.pdbx_unobs_or_zero_occ_residues;
     for (var i = 0, il = c._rowCount; i < il; ++i) {
@@ -61,7 +61,7 @@ function getSaccharideComponentMap(data) {
                     map.set(comp_id.value(i), saccharideComp);
                 }
                 else {
-                    console.warn("Unknown SNFG name '" + snfgName + "'");
+                    console.warn("Unknown SNFG name '".concat(snfgName, "'"));
                 }
             }
         }

package/lib/mol-model-formats/structure/basic/properties.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-model-formats/structure/basic/schema.d.ts CHANGED Viewed

@@ -69,8 +69,8 @@ export declare const BasicSchema: {
     };
     entity_poly: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
-        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
+        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
         pdbx_strand_id: import("../../../mol-data/db/column").Column.Schema.List<string>;
         pdbx_seq_one_letter_code: import("../../../mol-data/db/column").Column.Schema.Str;
@@ -79,7 +79,7 @@ export declare const BasicSchema: {
     };
     entity_poly_seq: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         mon_id: import("../../../mol-data/db/column").Column.Schema.Str;
         num: import("../../../mol-data/db/column").Column.Schema.Int;
     };
@@ -92,7 +92,7 @@ export declare const BasicSchema: {
         formula: import("../../../mol-data/db/column").Column.Schema.Str;
         formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
         id: import("../../../mol-data/db/column").Column.Schema.Str;
-        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         name: import("../../../mol-data/db/column").Column.Schema.Str;
         pdbx_synonyms: import("../../../mol-data/db/column").Column.Schema.List<string>;
     };

package/lib/mol-model-formats/structure/common/component.d.ts CHANGED Viewed

@@ -23,7 +23,7 @@ export declare class ComponentBuilder {
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
     }, "id" | "type" | "name">> | undefined;
@@ -32,7 +32,7 @@ export declare class ComponentBuilder {
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
     }, "id" | "type" | "name">>;
@@ -41,7 +41,7 @@ export declare class ComponentBuilder {
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "no" | "n" | "yes">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
     }>;

package/lib/mol-model-formats/structure/common/entity.js CHANGED Viewed

@@ -19,7 +19,7 @@ var EntityBuilder = /** @class */ (function () {
     }
     EntityBuilder.prototype.set = function (type, description) {
         this.count += 1;
-        this.ids.push("" + this.count);
+        this.ids.push("".concat(this.count));
         this.types.push(type);
         this.descriptions.push([description]);
     };
@@ -27,7 +27,7 @@ var EntityBuilder = /** @class */ (function () {
         if (moleculeType === 2 /* Water */) {
             if (this.waterId === undefined) {
                 this.set('water', (options === null || options === void 0 ? void 0 : options.customName) || 'Water');
-                this.waterId = "" + this.count;
+                this.waterId = "".concat(this.count);
             }
             return this.waterId;
         }
@@ -37,8 +37,8 @@ var EntityBuilder = /** @class */ (function () {
             }
             else {
                 if (!this.chainMap.has(chainId)) {
-                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer " + (this.chainMap.size + 1));
-                    this.chainMap.set(chainId, "" + this.count);
+                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer ".concat(this.chainMap.size + 1));
+                    this.chainMap.set(chainId, "".concat(this.count));
                 }
                 return this.chainMap.get(chainId);
             }
@@ -46,7 +46,7 @@ var EntityBuilder = /** @class */ (function () {
         else {
             if (!this.heteroMap.has(compId)) {
                 this.set('non-polymer', (options === null || options === void 0 ? void 0 : options.customName) || this.namesMap.get(compId) || compId);
-                this.heteroMap.set(compId, "" + this.count);
+                this.heteroMap.set(compId, "".concat(this.count));
             }
             return this.heteroMap.get(compId);
         }
@@ -63,7 +63,7 @@ var EntityBuilder = /** @class */ (function () {
             var _a = compounds[i], chains = _a.chains, description = _a.description;
             this.set('polymer', description);
             for (var j = 0, jl = chains.length; j < jl; ++j) {
-                this.compoundsMap.set(chains[j], "" + this.count);
+                this.compoundsMap.set(chains[j], "".concat(this.count));
             }
         }
     };

package/lib/mol-model-formats/structure/common/entity.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-model-formats/structure/pdb/assembly.js CHANGED Viewed

@@ -50,7 +50,7 @@ export function parseRemark350(lines, lineStart, lineEnd) {
         var line = getLine(i);
         if (line.substr(11, 12) === 'BIOMOLECULE:') {
             var id = line.substr(23).trim();
-            var details = "Biomolecule " + id;
+            var details = "Biomolecule ".concat(id);
             line = getLine(i + 1);
             if (line.substr(11, 30) !== 'APPLY THE FOLLOWING TO CHAINS:') {
                 i++;
@@ -86,7 +86,7 @@ export function parseRemark350(lines, lineStart, lineEnd) {
         }
         else if (line.substr(11, 33) === 'APPLYING THE FOLLOWING TO CHAINS:') {
             // variant in older PDB format version
-            current = PdbAssembly("" + asmId, "Biomolecule " + asmId);
+            current = PdbAssembly("".concat(asmId), "Biomolecule ".concat(asmId));
             assemblies.push(current);
             asmId += 1;
             group = { chains: [], operators: [] };
@@ -143,9 +143,9 @@ export function parseRemark350(lines, lineStart, lineEnd) {
                 };
                 for (var i = 0; i < 3; i++) {
                     for (var j = 0; j < 3; j++) {
-                        row["matrix[" + (i + 1) + "][" + (j + 1) + "]"] = '' + Mat4.getValue(oper.matrix, i, j);
+                        row["matrix[".concat(i + 1, "][").concat(j + 1, "]")] = '' + Mat4.getValue(oper.matrix, i, j);
                     }
-                    row["vector[" + (i + 1) + "]"] = '' + Mat4.getValue(oper.matrix, i, 3);
+                    row["vector[".concat(i + 1, "]")] = '' + Mat4.getValue(oper.matrix, i, 3);
                 }
                 pdbx_struct_oper_list_rows.push(row);
             }
@@ -159,13 +159,13 @@ export function parseRemark350(lines, lineStart, lineEnd) {
     };
     var _loop_1 = function (i) {
         var _loop_2 = function (j) {
-            var k_1 = "matrix[" + (i + 1) + "][" + (j + 1) + "]";
+            var k_1 = "matrix[".concat(i + 1, "][").concat(j + 1, "]");
             pdbx_struct_oper_list[k_1] = CifField.ofStrings(pdbx_struct_oper_list_rows.map(function (r) { return r[k_1]; }));
         };
         for (var j = 0; j < 3; j++) {
             _loop_2(j);
         }
-        var k = "vector[" + (i + 1) + "]";
+        var k = "vector[".concat(i + 1, "]");
         pdbx_struct_oper_list[k] = CifField.ofStrings(pdbx_struct_oper_list_rows.map(function (r) { return r[k]; }));
     };
     for (var i = 0; i < 3; i++) {
@@ -207,9 +207,9 @@ export function parseMtrix(lines, lineStart, lineEnd) {
         };
         for (var i = 0; i < 3; i++) {
             for (var j = 0; j < 3; j++) {
-                row["matrix[" + (i + 1) + "][" + (j + 1) + "]"] = '' + Mat4.getValue(oper, i, j);
+                row["matrix[".concat(i + 1, "][").concat(j + 1, "]")] = '' + Mat4.getValue(oper, i, j);
             }
-            row["vector[" + (i + 1) + "]"] = '' + Mat4.getValue(oper, i, 3);
+            row["vector[".concat(i + 1, "]")] = '' + Mat4.getValue(oper, i, 3);
         }
         struct_ncs_oper_rows.push(row);
     }
@@ -220,13 +220,13 @@ export function parseMtrix(lines, lineStart, lineEnd) {
     };
     var _loop_3 = function (i) {
         var _loop_4 = function (j) {
-            var k_2 = "matrix[" + (i + 1) + "][" + (j + 1) + "]";
+            var k_2 = "matrix[".concat(i + 1, "][").concat(j + 1, "]");
             struct_ncs_oper[k_2] = CifField.ofStrings(struct_ncs_oper_rows.map(function (r) { return r[k_2]; }));
         };
         for (var j = 0; j < 3; j++) {
             _loop_4(j);
         }
-        var k = "vector[" + (i + 1) + "]";
+        var k = "vector[".concat(i + 1, "]");
         struct_ncs_oper[k] = CifField.ofStrings(struct_ncs_oper_rows.map(function (r) { return r[k]; }));
     };
     for (var i = 0; i < 3; i++) {

package/lib/mol-model-formats/structure/pdb/assembly.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model-formats/structure/pdb/conect.js CHANGED Viewed

@@ -41,7 +41,7 @@ export function parseConect(lines, lineStart, lineEnd, sites) {
             // as double/triple bonds, e.g. CONECT 1529 1528 1528 is a double bond
             if (bondIndex[idxB] !== undefined)
                 continue;
-            id.push("covale" + k);
+            id.push("covale".concat(k));
             conn_type_id.push('covale');
             ptnr1_label_asym_id.push(sites.label_asym_id.str(idxA));
             ptnr1_auth_seq_id.push(sites.auth_seq_id.int(idxA));

package/lib/mol-model-formats/structure/pdb/conect.js.map CHANGED Viewed

	@@ -1 +1 @@
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