npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

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Files changed (1658) hide show

package/lib/commonjs/mol-repr/structure/registry.js CHANGED Viewed

@@ -29,7 +29,7 @@ var StructureRepresentationRegistry = /** @class */ (function (_super) {
         var _this = _super.call(this) || this;
         (0, object_1.objectForEach)(StructureRepresentationRegistry.BuiltIn, function (p, k) {
             if (p.name !== k)
-                throw new Error("Fix BuiltInStructureRepresentations to have matching names. " + p.name + " " + k);
+                throw new Error("Fix BuiltInStructureRepresentations to have matching names. ".concat(p.name, " ").concat(k));
             _this.add(p);
         });
         return _this;

package/lib/commonjs/mol-repr/structure/registry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/structure/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAGH,gDAAsD;AACtD,oDAAmF;AAEnF,kEAAqF;AACrF,8DAAmF;AACnF,oDAAyE;AACzE,wDAA6E;AAC7E,sEAA0F;AAC1F,gDAAqE;AACrE,wEAA4F;AAC5F,4DAAiF;AACjF,gDAAqE;AACrE,gDAAqE;AACrE,wDAA6E;AAC7E,8CAAmE;AACnE,oEAAwF;AACxF,sDAA2E;AAE3E;IAAqD,gEAA+D;IAChH;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,+BAA+B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACxD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,~~iEAA~~+D,CAAC,CAAC,IAAI,~~SAAI~~,~~CAAG~~,CAAC,CAAC;YAChH,KAAI,CAAC,GAAG,CAAC,CAAQ,CAAC,CAAC;QACvB,CAAC,CAAC,CAAC;;IACP,CAAC;IACL,sCAAC;AAAD,CAAC,AARD,CAAqD,uCAAsB,GAQ1E;AARY,0EAA+B;AAU5C,WAAiB,+BAA+B;IAC/B,uCAAO,GAAG;QACnB,SAAS,EAAE,uCAA6B;QACxC,UAAU,EAAE,yCAA8B;QAC1C,gBAAgB,EAAE,mDAAkC;QACpD,cAAc,EAAE,iDAAkC;QAClD,WAAW,EAAE,2CAA+B;QAC5C,kBAAkB,EAAE,wDAAqC;QACzD,iBAAiB,EAAE,sDAAoC;QACvD,OAAO,EAAE,mCAA2B;QACpC,MAAM,EAAE,iCAA0B;QAClC,mBAAmB,EAAE,0DAAsC;QAC3D,aAAa,EAAE,+CAAiC;QAChD,OAAO,EAAE,mCAA2B;QACpC,OAAO,EAAE,mCAA2B;QACpC,WAAW,EAAE,2CAA+B;KAC/C,CAAC;AAKN,CAAC,EArBgB,+BAA+B,GAA/B,uCAA+B,KAA/B,uCAA+B,QAqB/C;AA/BY,0EAA+B"}
1	+ {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/structure/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAGH,gDAAsD;AACtD,oDAAmF;AAEnF,kEAAqF;AACrF,8DAAmF;AACnF,oDAAyE;AACzE,wDAA6E;AAC7E,sEAA0F;AAC1F,gDAAqE;AACrE,wEAA4F;AAC5F,4DAAiF;AACjF,gDAAqE;AACrE,gDAAqE;AACrE,wDAA6E;AAC7E,8CAAmE;AACnE,oEAAwF;AACxF,sDAA2E;AAE3E;IAAqD,gEAA+D;IAChH;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,+BAA+B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACxD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,sEAA+D,CAAC,CAAC,IAAI,cAAI,CAAC,CAAE,CAAC,CAAC;YAChH,KAAI,CAAC,GAAG,CAAC,CAAQ,CAAC,CAAC;QACvB,CAAC,CAAC,CAAC;;IACP,CAAC;IACL,sCAAC;AAAD,CAAC,AARD,CAAqD,uCAAsB,GAQ1E;AARY,0EAA+B;AAU5C,WAAiB,+BAA+B;IAC/B,uCAAO,GAAG;QACnB,SAAS,EAAE,uCAA6B;QACxC,UAAU,EAAE,yCAA8B;QAC1C,gBAAgB,EAAE,mDAAkC;QACpD,cAAc,EAAE,iDAAkC;QAClD,WAAW,EAAE,2CAA+B;QAC5C,kBAAkB,EAAE,wDAAqC;QACzD,iBAAiB,EAAE,sDAAoC;QACvD,OAAO,EAAE,mCAA2B;QACpC,MAAM,EAAE,iCAA0B;QAClC,mBAAmB,EAAE,0DAAsC;QAC3D,aAAa,EAAE,+CAAiC;QAChD,OAAO,EAAE,mCAA2B;QACpC,OAAO,EAAE,mCAA2B;QACpC,WAAW,EAAE,2CAA+B;KAC/C,CAAC;AAKN,CAAC,EArBgB,+BAA+B,GAA/B,uCAA+B,KAA/B,uCAA+B,QAqB/C;AA/BY,0EAA+B"}

package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts CHANGED Viewed

@@ -16,14 +16,17 @@ export declare const BallAndStickParams: {
     visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
     tryUseImpostor: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -48,14 +51,17 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
     visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
     tryUseImpostor: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -81,14 +87,17 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
     visuals: PD.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
     tryUseImpostor: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts CHANGED Viewed

@@ -14,6 +14,9 @@ export declare const CarbohydrateParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -39,6 +42,9 @@ export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structu
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -65,6 +71,9 @@ export declare const CarbohydrateRepresentationProvider: StructureRepresentation
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts CHANGED Viewed

@@ -25,6 +25,7 @@ export declare const CartoonParams: {
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
+    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
     linearSegments: PD.Numeric;
 };
 export declare type CartoonParams = typeof CartoonParams;
@@ -45,6 +46,7 @@ export declare function getCartoonParams(ctx: ThemeRegistryContext, structure: S
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
+    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
     linearSegments: PD.Numeric;
 };
 export declare type CartoonRepresentation = StructureRepresentation<CartoonParams>;
@@ -66,5 +68,6 @@ export declare const CartoonRepresentationProvider: StructureRepresentationProvi
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
+    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
     linearSegments: PD.Numeric;
 }, "cartoon">;

package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts CHANGED Viewed

@@ -17,13 +17,16 @@ export declare const EllipsoidParams: {
     linkCap: PD.BooleanParam;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "ellipsoid-mesh">;
     tryUseImpostor: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -48,13 +51,16 @@ export declare function getEllipsoidParams(ctx: ThemeRegistryContext, structure:
     linkCap: PD.BooleanParam;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "ellipsoid-mesh">;
     tryUseImpostor: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -80,13 +86,16 @@ export declare const EllipsoidRepresentationProvider: StructureRepresentationPro
     linkCap: PD.BooleanParam;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "ellipsoid-mesh">;
     tryUseImpostor: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts CHANGED Viewed

@@ -22,10 +22,10 @@ export declare const GaussianSurfaceParams: {
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     tryUseGpu: PD.BooleanParam;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -47,10 +47,10 @@ export declare function getGaussianSurfaceParams(ctx: ThemeRegistryContext, stru
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     tryUseGpu: PD.BooleanParam;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -73,10 +73,10 @@ export declare const GaussianSurfaceRepresentationProvider: StructureRepresentat
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     tryUseGpu: PD.BooleanParam;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts CHANGED Viewed

@@ -25,7 +25,7 @@ export declare const GaussianVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -61,7 +61,7 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -98,7 +98,7 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-repr/structure/representation/line.d.ts CHANGED Viewed

@@ -23,11 +23,12 @@ export declare const LineParams: {
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
 };
 export declare type LineParams = typeof LineParams;
@@ -46,11 +47,12 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
 };
 export declare type LineRepresentation = StructureRepresentation<LineParams>;
@@ -70,10 +72,11 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
 }, "line">;

package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts CHANGED Viewed

@@ -21,10 +21,10 @@ export declare const MolecularSurfaceParams: {
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -45,10 +45,10 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -70,10 +70,10 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+    }>, "on">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/units-representation.js CHANGED Viewed

@@ -192,7 +192,7 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
                     case 28:
                         visualGroup.group = group;
                         return [3 /*break*/, 30];
-                    case 29: throw new Error("expected to find visual for hashCode " + group.hashCode);
+                    case 29: throw new Error("expected to find visual for hashCode ".concat(group.hashCode));
                     case 30:
                         if (!runtime.shouldUpdate) return [3 /*break*/, 32];
                         return [4 /*yield*/, runtime.update({ message: 'Creating or updating UnitsVisual', current: i, max: _groups.length })];

package/lib/commonjs/mol-repr/structure/units-representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-repr/structure/units-visual.d.ts CHANGED Viewed

@@ -152,7 +152,7 @@ export declare const UnitsDirectVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts CHANGED Viewed

@@ -13,14 +13,17 @@ export declare const InterUnitBondCylinderParams: {
     tryUseImpostor: PD.BooleanParam;
     includeParent: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
@@ -42,14 +45,17 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
     tryUseImpostor: PD.BooleanParam;
     includeParent: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js CHANGED Viewed

@@ -181,6 +181,9 @@ function InterUnitBondCylinderImpostorVisual(materialId) {
                 newProps.linkSpacing !== currentProps.linkSpacing ||
                 newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
                 newProps.linkCap !== currentProps.linkCap ||
+                newProps.aromaticScale !== currentProps.aromaticScale ||
+                newProps.aromaticSpacing !== currentProps.aromaticSpacing ||
+                newProps.aromaticDashCount !== currentProps.aromaticDashCount ||
                 newProps.dashCount !== currentProps.dashCount ||
                 newProps.dashScale !== currentProps.dashScale ||
                 newProps.dashCap !== currentProps.dashCap ||
@@ -217,6 +220,9 @@ function InterUnitBondCylinderMeshVisual(materialId) {
                 newProps.linkSpacing !== currentProps.linkSpacing ||
                 newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
                 newProps.linkCap !== currentProps.linkCap ||
+                newProps.aromaticScale !== currentProps.aromaticScale ||
+                newProps.aromaticSpacing !== currentProps.aromaticSpacing ||
+                newProps.aromaticDashCount !== currentProps.aromaticDashCount ||
                 newProps.dashCount !== currentProps.dashCount ||
                 newProps.dashScale !== currentProps.dashScale ||
                 newProps.dashCap !== currentProps.dashCap ||

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts CHANGED Viewed

@@ -7,13 +7,14 @@ import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { ComplexVisual } from '../complex-visual';
 export declare const InterUnitBondLineParams: {
     includeParent: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
     sizeFactor: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js CHANGED Viewed

@@ -117,6 +117,7 @@ function InterUnitBondLineVisual(materialId) {
             state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
                 newProps.linkScale !== currentProps.linkScale ||
                 newProps.linkSpacing !== currentProps.linkSpacing ||
+                newProps.aromaticDashCount !== currentProps.aromaticDashCount ||
                 newProps.dashCount !== currentProps.dashCount ||
                 newProps.ignoreHydrogens !== currentProps.ignoreHydrogens ||
                 !(0, mol_util_1.arrayEqual)(newProps.includeTypes, currentProps.includeTypes) ||

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map CHANGED Viewed

	@@ -1 +1 @@
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