molstar 2.3.5 → 2.3.9

package/lib/commonjs/mol-repr/shape/loci/dihedral.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-repr/shape/loci/distance.js

@@ -53,7 +53,7 @@ function setDistanceState(pair, state) {
 }
 var tmpState = getDistanceState();
 function getDistanceName(data, unitLabel) {
-    return data.pairs.length === 1 ? "Distance " + (0, label_1.distanceLabel)(data.pairs[0], { unitLabel: unitLabel, measureOnly: true }) : data.pairs.length + " Distances";
+    return data.pairs.length === 1 ? "Distance ".concat((0, label_1.distanceLabel)(data.pairs[0], { unitLabel: unitLabel, measureOnly: true })) : "".concat(data.pairs.length, " Distances");
 }
 //
 function buildLines(data, props, lines) {
@@ -76,7 +76,7 @@ function buildText(data, props, text) {
     for (var i = 0, il = data.pairs.length; i < il; ++i) {
         setDistanceState(data.pairs[i], tmpState);
         var center = tmpState.center, distance = tmpState.distance, sphereA = tmpState.sphereA, sphereB = tmpState.sphereB;
-        var label = props.customText || distance.toFixed(2) + " " + props.unitLabel;
+        var label = props.customText || "".concat(distance.toFixed(2), " ").concat(props.unitLabel);
         var radius = Math.max(2, sphereA.radius, sphereB.radius);
         var scale = radius / 2;
         builder.add(label, center[0], center[1], center[2], 1, scale, i);

package/lib/commonjs/mol-repr/shape/loci/distance.js.map

@@ -1 +1 @@
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+{"version":3,"file":"distance.js","sourceRoot":"","sources":["../../../../../src/mol-repr/shape/loci/distance.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,gDAA+C;AAE/C,+DAA8D;AAC9D,4DAA2D;AAC3D,uEAA2E;AAC3E,uDAA2D;AAC3D,oDAAwD;AACxD,uDAAyG;AACzG,kDAAiD;AACjD,+EAA6E;AAC7E,4EAA0E;AAC1E,mEAAwD;AACxD,iEAA8E;AAC9E,kDAAyD;AACzD,mCAA+C;AAC/C,uDAAsD;AAMtD,IAAM,YAAY,GAAG;IACjB,SAAS,EAAE,kCAAE,CAAC,IAAI,CAAC,QAAQ,EAAE,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC;CACtD,CAAC;AAEF,IAAM,UAAU,yEACT,aAAK,CAAC,MAAM,GACZ,YAAY,KACf,mBAAmB,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EACrC,UAAU,EAAE,kCAAE,CAAC,KAAK,CAAC,kBAAU,CAAC,UAAU,EAAE,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,EAClE,SAAS,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAC/D,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GACnE,CAAC;AAGF,IAAM,UAAU,mDACT,4BAAmB,GACnB,YAAY,CAClB,CAAC;AAGF,IAAM,eAAe,GAAG;IACpB,OAAO,EAAE,UAAC,GAA0B,EAAE,SAA+D,IAAK,OAAA,IAAA,oCAAmB,EAAC,aAAa,EAAE,aAAK,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,CAAC,EAA5H,CAA4H;IACtO,MAAM,EAAE,UAAC,GAA0B,EAAE,SAA+D,IAAK,OAAA,IAAA,oCAAmB,EAAC,YAAY,EAAE,WAAI,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,4BAAY,CAAC,IAAI,IAAG,EAA5C,CAA4C,EAAE,CAAC,EAAjH,CAAiH;CAC7N,CAAC;AAEW,QAAA,cAAc,yEACpB,UAAU,GACV,UAAU,KACb,OAAO,EAAE,kCAAE,CAAC,WAAW,CAAC,CAAC,OAAO,EAAE,MAAM,CAAC,EAAE,kCAAE,CAAC,eAAe,CAAC,eAAe,CAAC,CAAC,IACjF;AAIF,EAAE;AAEF,SAAS,gBAAgB;IACrB,OAAO;QACH,OAAO,EAAE,IAAA,mBAAQ,GAAE;QACnB,OAAO,EAAE,IAAA,mBAAQ,GAAE;QAEnB,MAAM,EAAE,IAAA,qBAAI,GAAE;QACd,QAAQ,EAAE,CAAC;KACd,CAAC;AACN,CAAC;AAGD,SAAS,gBAAgB,CAAC,IAAoB,EAAE,KAAoB;IACxD,IAAA,OAAO,GAAsB,KAAK,QAA3B,EAAE,OAAO,GAAa,KAAK,QAAlB,EAAE,MAAM,GAAK,KAAK,OAAV,CAAW;IAErC,IAAA,KAAiB,IAAI,CAAC,IAAI,EAAzB,KAAK,QAAA,EAAE,KAAK,QAAa,CAAC;IACjC,WAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;IACvC,WAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;IAEvC,qBAAI,CAAC,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IACjD,qBAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,CAAC,CAAC;IAChC,KAAK,CAAC,QAAQ,GAAG,qBAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IAE/D,OAAO,KAAK,CAAC;AACjB,CAAC;AAED,IAAM,QAAQ,GAAG,gBAAgB,EAAE,CAAC;AAEpC,SAAS,eAAe,CAAC,IAAkB,EAAE,SAAiB;IAC1D,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,mBAAY,IAAA,qBAAa,EAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,SAAS,WAAA,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,CAAE,CAAC,CAAC,CAAC,UAAG,IAAI,CAAC,KAAK,CAAC,MAAM,eAAY,CAAC;AACrJ,CAAC;AAED,EAAE;AAEF,SAAS,UAAU,CAAC,IAAkB,EAAE,KAAoB,EAAE,KAAa;IACvE,IAAM,OAAO,GAAG,4BAAY,CAAC,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;IACpD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACjD,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;QAC1C,OAAO,CAAC,oBAAoB,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC;KACvG;IACD,OAAO,OAAO,CAAC,QAAQ,EAAE,CAAC;AAC9B,CAAC;AAED,SAAS,aAAa,CAAC,GAAmB,EAAE,IAAkB,EAAE,KAAoB,EAAE,KAAoB;IACtG,IAAM,KAAK,GAAG,UAAU,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC/D,IAAM,IAAI,GAAG,eAAe,CAAC,IAAI,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC;IACpD,IAAM,QAAQ,GAAG,UAAC,OAAe,IAAK,OAAA,IAAA,qBAAa,EAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,KAAK,CAAC,EAAzC,CAAyC,CAAC;IAChF,OAAO,aAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,cAAM,OAAA,KAAK,CAAC,UAAU,EAAhB,CAAgB,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,QAAQ,CAAC,CAAC;AACpG,CAAC;AAED,EAAE;AAEF,SAAS,SAAS,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAW;IACpE,IAAM,OAAO,GAAG,0BAAW,CAAC,MAAM,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,CAAC,CAAC;IACzD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACjD,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;QAClC,IAAA,MAAM,GAAiC,QAAQ,OAAzC,EAAE,QAAQ,GAAuB,QAAQ,SAA/B,EAAE,OAAO,GAAc,QAAQ,QAAtB,EAAE,OAAO,GAAK,QAAQ,QAAb,CAAc;QACxD,IAAM,KAAK,GAAG,KAAK,CAAC,UAAU,IAAI,UAAG,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,cAAI,KAAK,CAAC,SAAS,CAAE,CAAC;QAC9E,IAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;QAC3D,IAAM,KAAK,GAAG,MAAM,GAAG,CAAC,CAAC;QACzB,OAAO,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC;KACpE;IACD,OAAO,OAAO,CAAC,OAAO,EAAE,CAAC;AAC7B,CAAC;AAED,SAAS,YAAY,CAAC,GAAmB,EAAE,IAAkB,EAAE,KAAoB,EAAE,KAAmB;IACpG,IAAM,IAAI,GAAG,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC7D,IAAM,IAAI,GAAG,eAAe,CAAC,IAAI,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC;IACpD,IAAM,QAAQ,GAAG,UAAC,OAAe,IAAK,OAAA,IAAA,qBAAa,EAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,KAAK,CAAC,EAAzC,CAAyC,CAAC;IAChF,OAAO,aAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,cAAM,OAAA,KAAK,CAAC,QAAQ,EAAd,CAAc,EAAE,QAAQ,CAAC,CAAC;AACjG,CAAC;AAKD,SAAgB,sBAAsB,CAAC,GAA0B,EAAE,SAAmE;IAClI,OAAO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package/lib/commonjs/mol-repr/shape/loci/label.js

@@ -29,7 +29,7 @@ function label(info, condensed) {
     return info.label || (0, label_1.lociLabel)(info.loci, { hidePrefix: true, htmlStyling: false, condensed: condensed });
 }
 function getLabelName(data) {
-    return data.infos.length === 1 ? label(data.infos[0]) : data.infos.length + " Labels";
+    return data.infos.length === 1 ? label(data.infos[0]) : "".concat(data.infos.length, " Labels");
 }
 //
 function buildText(data, props, text) {

package/lib/commonjs/mol-repr/shape/loci/label.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts

@@ -1,18 +1,19 @@
 /**
- * Copyright (c) 2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
-import { Loci } from '../../../mol-model/loci';
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { Representation, RepresentationParamsGetter, RepresentationContext } from '../../representation';
+import { StructureElement } from '../../../mol-model/structure';
 export interface OrientationData {
-    locis: Loci[];
+    locis: StructureElement.Loci[];
 }
 export declare const OrientationParams: {
     visuals: PD.MultiSelect<"axes" | "ellipsoid" | "box">;
     color: PD.Color;
-    scale: PD.Numeric;
+    scaleFactor: PD.Numeric;
+    radiusScale: PD.Numeric;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/commonjs/mol-repr/shape/loci/orientation.js

@@ -1,13 +1,12 @@
 "use strict";
 /**
- * Copyright (c) 2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.OrientationRepresentation = exports.OrientationParams = void 0;
 var tslib_1 = require("tslib");
-var loci_1 = require("../../../mol-model/loci");
 var param_definition_1 = require("../../../mol-util/param-definition");
 var names_1 = require("../../../mol-util/color/names");
 var representation_1 = require("../representation");
@@ -22,9 +21,11 @@ var ellipsoid_1 = require("../../../mol-geo/geometry/mesh/builder/ellipsoid");
 var geometry_1 = require("../../../mol-math/geometry");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
 var marker_action_1 = require("../../../mol-util/marker-action");
+var structure_1 = require("../../../mol-model/structure");
 var SharedParams = {
     color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange),
-    scale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 10, step: 0.1 })
+    scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }),
+    radiusScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 10, step: 0.1 })
 };
 var AxesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
 var BoxParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
@@ -34,79 +35,64 @@ var OrientationVisuals = {
     'box': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getBoxShape, mesh_1.Mesh.Utils); },
     'ellipsoid': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getEllipsoidShape, mesh_1.Mesh.Utils); },
 };
-exports.OrientationParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, AxesParams), BoxParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)), color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 5, step: 0.1 }) });
+exports.OrientationParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, AxesParams), BoxParams), EllipsoidParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)) });
 //
-function orientationLabel(loci) {
-    var label = (0, label_1.lociLabel)(loci, { countsOnly: true });
-    return "Principal Axes of " + label;
+function getAxesName(locis) {
+    var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
+    return "Principal Axes of ".concat(label);
 }
-function getOrientationName(data) {
-    return data.locis.length === 1 ? orientationLabel(data.locis[0]) : data.locis.length + " Orientations";
-}
-//
 function buildAxesMesh(data, props, mesh) {
     var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
-    for (var i = 0, il = data.locis.length; i < il; ++i) {
-        var principalAxes = loci_1.Loci.getPrincipalAxes(data.locis[i]);
-        if (principalAxes) {
-            state.currentGroup = i;
-            (0, axes_1.addAxes)(state, principalAxes.momentsAxes, props.scale, 2, 20);
-        }
-    }
+    var principalAxes = structure_1.StructureElement.Loci.getPrincipalAxesMany(data.locis);
+    geometry_1.Axes3D.scale(principalAxes.momentsAxes, principalAxes.momentsAxes, props.scaleFactor);
+    state.currentGroup = 0;
+    (0, axes_1.addAxes)(state, principalAxes.momentsAxes, props.radiusScale, 2, 20);
     return mesh_builder_1.MeshBuilder.getMesh(state);
 }
 function getAxesShape(ctx, data, props, shape) {
     var mesh = buildAxesMesh(data, props, shape && shape.geometry);
-    var name = getOrientationName(data);
-    var getLabel = function (groupId) {
-        return orientationLabel(data.locis[groupId]);
-    };
-    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, getLabel);
+    var name = getAxesName(data.locis);
+    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, function () { return name; });
 }
 //
+function getBoxName(locis) {
+    var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
+    return "Oriented Box of ".concat(label);
+}
 function buildBoxMesh(data, props, mesh) {
     var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
-    for (var i = 0, il = data.locis.length; i < il; ++i) {
-        var principalAxes = loci_1.Loci.getPrincipalAxes(data.locis[i]);
-        if (principalAxes) {
-            state.currentGroup = i;
-            (0, box_1.addOrientedBox)(state, principalAxes.boxAxes, props.scale, 2, 20);
-        }
-    }
+    var principalAxes = structure_1.StructureElement.Loci.getPrincipalAxesMany(data.locis);
+    geometry_1.Axes3D.scale(principalAxes.boxAxes, principalAxes.boxAxes, props.scaleFactor);
+    state.currentGroup = 0;
+    (0, box_1.addOrientedBox)(state, principalAxes.boxAxes, props.radiusScale, 2, 20);
     return mesh_builder_1.MeshBuilder.getMesh(state);
 }
 function getBoxShape(ctx, data, props, shape) {
     var mesh = buildBoxMesh(data, props, shape && shape.geometry);
-    var name = getOrientationName(data);
-    var getLabel = function (groupId) {
-        return orientationLabel(data.locis[groupId]);
-    };
-    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, getLabel);
+    var name = getBoxName(data.locis);
+    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, function () { return name; });
 }
 //
+function getEllipsoidName(locis) {
+    var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
+    return "Oriented Ellipsoid of ".concat(label);
+}
 function buildEllipsoidMesh(data, props, mesh) {
     var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
-    for (var i = 0, il = data.locis.length; i < il; ++i) {
-        var principalAxes = loci_1.Loci.getPrincipalAxes(data.locis[i]);
-        if (principalAxes) {
-            var axes = principalAxes.boxAxes;
-            var origin_1 = axes.origin, dirA = axes.dirA, dirB = axes.dirB;
-            var size = geometry_1.Axes3D.size((0, linear_algebra_1.Vec3)(), axes);
-            linear_algebra_1.Vec3.scale(size, size, 0.5);
-            var radiusScale = linear_algebra_1.Vec3.create(size[2], size[1], size[0]);
-            state.currentGroup = i;
-            (0, ellipsoid_1.addEllipsoid)(state, origin_1, dirA, dirB, radiusScale, 2);
-        }
-    }
+    var principalAxes = structure_1.StructureElement.Loci.getPrincipalAxesMany(data.locis);
+    var axes = principalAxes.boxAxes;
+    var origin = axes.origin, dirA = axes.dirA, dirB = axes.dirB;
+    var size = geometry_1.Axes3D.size((0, linear_algebra_1.Vec3)(), axes);
+    linear_algebra_1.Vec3.scale(size, size, 0.5 * props.scaleFactor);
+    var radiusScale = linear_algebra_1.Vec3.create(size[2], size[1], size[0]);
+    state.currentGroup = 0;
+    (0, ellipsoid_1.addEllipsoid)(state, origin, dirA, dirB, radiusScale, 2);
     return mesh_builder_1.MeshBuilder.getMesh(state);
 }
 function getEllipsoidShape(ctx, data, props, shape) {
     var mesh = buildEllipsoidMesh(data, props, shape && shape.geometry);
-    var name = getOrientationName(data);
-    var getLabel = function (groupId) {
-        return orientationLabel(data.locis[groupId]);
-    };
-    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, getLabel);
+    var name = getEllipsoidName(data.locis);
+    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, function () { return name; });
 }
 function OrientationRepresentation(ctx, getParams) {
     var repr = representation_2.Representation.createMulti('Orientation', ctx, getParams, representation_2.Representation.StateBuilder, OrientationVisuals);

package/lib/commonjs/mol-repr/shape/loci/orientation.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-repr/shape/loci/plane.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ */
+import { ParamDefinition as PD } from '../../../mol-util/param-definition';
+import { Representation, RepresentationParamsGetter, RepresentationContext } from '../../representation';
+import { StructureElement } from '../../../mol-model/structure';
+export interface PlaneData {
+    locis: StructureElement.Loci[];
+}
+export declare const PlaneParams: {
+    visuals: PD.MultiSelect<"plane">;
+    color: PD.Color;
+    scaleFactor: PD.Numeric;
+    doubleSided: PD.BooleanParam;
+    flipSided: PD.BooleanParam;
+    flatShaded: PD.BooleanParam;
+    ignoreLight: PD.BooleanParam;
+    xrayShaded: PD.BooleanParam;
+    alpha: PD.Numeric;
+    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+};
+export declare type PlaneParams = typeof PlaneParams;
+export declare type PlaneProps = PD.Values<PlaneParams>;
+export declare type PlaneRepresentation = Representation<PlaneData, PlaneParams>;
+export declare function PlaneRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<PlaneData, PlaneParams>): PlaneRepresentation;

package/lib/commonjs/mol-repr/shape/loci/plane.js

@@ -0,0 +1,61 @@
+"use strict";
+/**
+ * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.PlaneRepresentation = exports.PlaneParams = void 0;
+var tslib_1 = require("tslib");
+var param_definition_1 = require("../../../mol-util/param-definition");
+var names_1 = require("../../../mol-util/color/names");
+var representation_1 = require("../representation");
+var representation_2 = require("../../representation");
+var shape_1 = require("../../../mol-model/shape");
+var mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
+var mesh_builder_1 = require("../../../mol-geo/geometry/mesh/mesh-builder");
+var label_1 = require("../../../mol-theme/label");
+var linear_algebra_1 = require("../../../mol-math/linear-algebra");
+var marker_action_1 = require("../../../mol-util/marker-action");
+var plane_1 = require("../../../mol-geo/primitive/plane");
+var structure_1 = require("../../../mol-model/structure");
+var geometry_1 = require("../../../mol-math/geometry");
+var _PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }) });
+var PlaneVisuals = {
+    'plane': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getPlaneShape, mesh_1.Mesh.Utils); },
+};
+exports.PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, _PlaneParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['plane'], param_definition_1.ParamDefinition.objectToOptions(PlaneVisuals)) });
+//
+function getPlaneName(locis) {
+    var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
+    return "Best Fit Plane of ".concat(label);
+}
+var tmpMat = (0, linear_algebra_1.Mat4)();
+var tmpV = (0, linear_algebra_1.Vec3)();
+function buildPlaneMesh(data, props, mesh) {
+    var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
+    var principalAxes = structure_1.StructureElement.Loci.getPrincipalAxesMany(data.locis);
+    var axes = principalAxes.boxAxes;
+    var plane = (0, plane_1.Plane)();
+    linear_algebra_1.Vec3.add(tmpV, axes.origin, axes.dirC);
+    linear_algebra_1.Mat4.targetTo(tmpMat, tmpV, axes.origin, axes.dirB);
+    linear_algebra_1.Mat4.scale(tmpMat, tmpMat, geometry_1.Axes3D.size(tmpV, axes));
+    linear_algebra_1.Mat4.scaleUniformly(tmpMat, tmpMat, props.scaleFactor);
+    linear_algebra_1.Mat4.setTranslation(tmpMat, axes.origin);
+    state.currentGroup = 0;
+    mesh_builder_1.MeshBuilder.addPrimitive(state, tmpMat, plane);
+    mesh_builder_1.MeshBuilder.addPrimitiveFlipped(state, tmpMat, plane);
+    return mesh_builder_1.MeshBuilder.getMesh(state);
+}
+function getPlaneShape(ctx, data, props, shape) {
+    var mesh = buildPlaneMesh(data, props, shape && shape.geometry);
+    var name = getPlaneName(data.locis);
+    return shape_1.Shape.create(name, data, mesh, function () { return props.color; }, function () { return 1; }, function () { return name; });
+}
+function PlaneRepresentation(ctx, getParams) {
+    var repr = representation_2.Representation.createMulti('Plane', ctx, getParams, representation_2.Representation.StateBuilder, PlaneVisuals);
+    repr.setState({ markerActions: marker_action_1.MarkerActions.Highlighting });
+    return repr;
+}
+exports.PlaneRepresentation = PlaneRepresentation;
+//# sourceMappingURL=plane.js.map

package/lib/commonjs/mol-repr/shape/loci/plane.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"plane.js","sourceRoot":"","sources":["../../../../../src/mol-repr/shape/loci/plane.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAGH,uEAA2E;AAC3E,uDAA2D;AAC3D,oDAAwD;AACxD,uDAAyG;AACzG,kDAAiD;AACjD,4DAA2D;AAC3D,4EAA0E;AAC1E,kDAAyE;AACzE,mEAA8D;AAC9D,iEAAgE;AAChE,0DAAyD;AACzD,0DAAgE;AAChE,uDAAoD;AAMpD,IAAM,YAAY,mDACX,WAAI,CAAC,MAAM,KACd,KAAK,EAAE,kCAAE,CAAC,KAAK,CAAC,kBAAU,CAAC,MAAM,CAAC,EAClC,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,GAC/D,CAAC;AAGF,IAAM,YAAY,GAAG;IACjB,OAAO,EAAE,UAAC,GAA0B,EAAE,SAA8D,IAAK,OAAA,IAAA,oCAAmB,EAAC,aAAa,EAAE,WAAI,CAAC,KAAK,CAAC,EAA9C,CAA8C;CAC1J,CAAC;AAEW,QAAA,WAAW,mDACjB,YAAY,KACf,OAAO,EAAE,kCAAE,CAAC,WAAW,CAAC,CAAC,OAAO,CAAC,EAAE,kCAAE,CAAC,eAAe,CAAC,YAAY,CAAC,CAAC,IACtE;AAIF,EAAE;AAEF,SAAS,YAAY,CAAC,KAA8B;IAChD,IAAM,KAAK,GAAG,IAAA,qCAA6B,EAAC,KAAK,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IACzE,OAAO,4BAAqB,KAAK,CAAE,CAAC;AACxC,CAAC;AAED,IAAM,MAAM,GAAG,IAAA,qBAAI,GAAE,CAAC;AACtB,IAAM,IAAI,GAAG,IAAA,qBAAI,GAAE,CAAC;AACpB,SAAS,cAAc,CAAC,IAAe,EAAE,KAAiB,EAAE,IAAW;IACnE,IAAM,KAAK,GAAG,0BAAW,CAAC,WAAW,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;IACtD,IAAM,aAAa,GAAG,4BAAgB,CAAC,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC7E,IAAM,IAAI,GAAG,aAAa,CAAC,OAAO,CAAC;IACnC,IAAM,KAAK,GAAG,IAAA,aAAK,GAAE,CAAC;IAEtB,qBAAI,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,qBAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IACpD,qBAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,iBAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;IACpD,qBAAI,CAAC,cAAc,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,WAAW,CAAC,CAAC;IACvD,qBAAI,CAAC,cAAc,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;IAEzC,KAAK,CAAC,YAAY,GAAG,CAAC,CAAC;IACvB,0BAAW,CAAC,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC/C,0BAAW,CAAC,mBAAmB,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IACtD,OAAO,0BAAW,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;AACtC,CAAC;AAED,SAAS,aAAa,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAiB,EAAE,KAAmB;IAC/F,IAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAClE,IAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACtC,OAAO,aAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,CAAC,EAAD,CAAC,EAAE,cAAM,OAAA,IAAI,EAAJ,CAAI,CAAC,CAAC;AAClF,CAAC;AAKD,SAAgB,mBAAmB,CAAC,GAA0B,EAAE,SAA6D;IACzH,IAAM,IAAI,GAAG,+BAAc,CAAC,WAAW,CAAC,OAAO,EAAE,GAAG,EAAE,SAAS,EAAE,+BAAc,CAAC,YAAY,EAAE,YAAqE,CAAC,CAAC;IACrK,IAAI,CAAC,QAAQ,CAAC,EAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,EAAE,CAAC,CAAC;IAC7D,OAAO,IAAI,CAAC;AAChB,CAAC;AAJD,kDAIC"}

package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts

@@ -14,8 +14,8 @@ interface UnitcellData {
 export declare const UnitcellParams: {
     cellColor: PD.Color;
     cellScale: PD.Numeric;
-    ref: PD.Select<"model" | "origin">;
-    attachment: PD.Select<"center" | "corner">;
+    ref: PD.Select<"origin" | "model">;
+    attachment: PD.Select<"corner" | "center">;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/complex-visual.d.ts

@@ -121,7 +121,7 @@ export declare const ComplexDirectVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-repr/structure/params.d.ts

@@ -89,7 +89,7 @@ export declare const StructureDirectVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "set" | "interpolate";
+            kind: "interpolate" | "set";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-repr/structure/registry.d.ts

@@ -28,6 +28,7 @@ export declare namespace StructureRepresentationRegistry {
             aspectRatio: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             arrowFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             tubularHelices: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
+            helixProfile: import("../../mol-util/param-definition").ParamDefinition.Select<"square" | "elliptical" | "rounded">;
             linearSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "cartoon">;
         backbone: import("./representation").StructureRepresentationProvider<{
@@ -55,14 +56,17 @@ export declare namespace StructureRepresentationRegistry {
             visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"element-sphere" | "intra-bond" | "inter-bond">;
             tryUseImpostor: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             adjustCylinderLength: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
-            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
             ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"off" | "symmetric" | "offset">;
             linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
+            aromaticScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticDashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -84,6 +88,9 @@ export declare namespace StructureRepresentationRegistry {
             linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
+            aromaticScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticDashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -111,13 +118,16 @@ export declare namespace StructureRepresentationRegistry {
             linkCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"intra-bond" | "inter-bond" | "ellipsoid-mesh">;
             tryUseImpostor: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
-            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
             ignoreHydrogens: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"off" | "symmetric" | "offset">;
             linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticDashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCap: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -146,10 +156,10 @@ export declare namespace StructureRepresentationRegistry {
             alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
             tryUseGpu: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
-            smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 resolutionFactor: number;
                 sampleStride: number;
-            }>, "on"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off">>;
+            }>, "on">>;
             doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
@@ -173,7 +183,7 @@ export declare namespace StructureRepresentationRegistry {
             renderMode: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
                 list: {
-                    kind: "set" | "interpolate";
+                    kind: "interpolate" | "set";
                     colors: import("../../mol-util/color/color").ColorListEntry[];
                 };
             }>, "volume"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
@@ -236,11 +246,12 @@ export declare namespace StructureRepresentationRegistry {
             quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
             pointSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             pointStyle: import("../../mol-util/param-definition").ParamDefinition.Select<"square" | "circle" | "fuzzy">;
-            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+            includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+            excludeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
             aromaticBonds: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             linkScale: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             linkSpacing: import("../../mol-util/param-definition").ParamDefinition.Numeric;
+            aromaticDashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             dashCount: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "line">;
         'molecular-surface': import("./representation").StructureRepresentationProvider<{
@@ -256,10 +267,10 @@ export declare namespace StructureRepresentationRegistry {
             lineSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
             quality: import("../../mol-util/param-definition").ParamDefinition.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-            smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 resolutionFactor: number;
                 sampleStride: number;
-            }>, "on"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "off">>;
+            }>, "on">>;
             doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
             flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;