npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"create-ions.js","sourceRoot":"","sources":["../../../../src/cli/chem-comp-dict/create-ions.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,8DAAqC;AACrC,sDAA6B;AAC7B,2DAAwB;AACxB,uDAAoB;AACpB,OAAO,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;AACjC,IAAM,SAAS,GAAG,cAAI,CAAC,SAAS,CAAC,YAAE,CAAC,SAAS,CAAC,CAAC;AAI/C,+BAAsD;AAEtD,SAAS,eAAe,CAAC,GAAmC;IACxD,IAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,KAAK,IAAM,CAAC,IAAI,GAAG,EAAE;QACT,IAAA,SAAS,GAAK,GAAG,CAAC,CAAC,CAAC,UAAX,CAAY;QAC7B,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE;YACxD,QAAQ,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;SACxC;KACJ;IACD,yDAAyD;IACzD,QAAQ,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IAC5B,OAAO,QAAQ,CAAC;AACpB,CAAC;AAED,SAAS,iBAAiB,CAAC,QAAgB,EAAE,QAAkB;IAC3D,IAAM,MAAM,GAAG,~~0RAQe,~~IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI,CAAC,SAChG,CAAC;IACE,SAAS,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;AAChC,CAAC;AAED,SAAe,GAAG,CAAC,GAAW,EAAE,aAAqB;IAArB,8BAAA,EAAA,qBAAqB;;;;;wBACjD,qBAAM,IAAA,0BAAmB,EAAC,aAAa,CAAC,EAAA;;oBAAxC,SAAwC,CAAC;oBAC7B,qBAAM,IAAA,cAAO,GAAE,EAAA;;oBAArB,GAAG,GAAG,SAAe;oBACrB,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC;oBACtC,IAAI,CAAC,YAAE,CAAC,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE;wBACnC,YAAE,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC;qBACnC;oBACD,iBAAiB,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;;;;;CACpC;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,qCAAqC;CACrD,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,KAAK,EAAE;IACvB,IAAI,EAAE,6BAA6B;CACtC,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,iBAAiB,EAAE,IAAI,EAAE;IACzC,MAAM,EAAE,YAAY;IACpB,IAAI,EAAE,iCAAiC;CAC1C,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC"}
1	+ {"version":3,"file":"create-ions.js","sourceRoot":"","sources":["../../../../src/cli/chem-comp-dict/create-ions.ts"],"names":[],"mappings":";;AACA;;;;GAIG;;;AAEH,8DAAqC;AACrC,sDAA6B;AAC7B,2DAAwB;AACxB,uDAAoB;AACpB,OAAO,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;AACjC,IAAM,SAAS,GAAG,cAAI,CAAC,SAAS,CAAC,YAAE,CAAC,SAAS,CAAC,CAAC;AAI/C,+BAAsD;AAEtD,SAAS,eAAe,CAAC,GAAmC;IACxD,IAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,KAAK,IAAM,CAAC,IAAI,GAAG,EAAE;QACT,IAAA,SAAS,GAAK,GAAG,CAAC,CAAC,CAAC,UAAX,CAAY;QAC7B,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE;YACxD,QAAQ,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;SACxC;KACJ;IACD,yDAAyD;IACzD,QAAQ,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IAC5B,OAAO,QAAQ,CAAC;AACpB,CAAC;AAED,SAAS,iBAAiB,CAAC,QAAgB,EAAE,QAAkB;IAC3D,IAAM,MAAM,GAAG,+RAQe,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI,CAAC,SAChG,CAAC;IACE,SAAS,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;AAChC,CAAC;AAED,SAAe,GAAG,CAAC,GAAW,EAAE,aAAqB;IAArB,8BAAA,EAAA,qBAAqB;;;;;wBACjD,qBAAM,IAAA,0BAAmB,EAAC,aAAa,CAAC,EAAA;;oBAAxC,SAAwC,CAAC;oBAC7B,qBAAM,IAAA,cAAO,GAAE,EAAA;;oBAArB,GAAG,GAAG,SAAe;oBACrB,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC;oBACtC,IAAI,CAAC,YAAE,CAAC,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE;wBACnC,YAAE,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC;qBACnC;oBACD,iBAAiB,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;;;;;CACpC;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,qCAAqC;CACrD,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,KAAK,EAAE;IACvB,IAAI,EAAE,6BAA6B;CACtC,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,iBAAiB,EAAE,IAAI,EAAE;IACzC,MAAM,EAAE,YAAY;IACpB,IAAI,EAAE,iCAAiC;CAC1C,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC"}

package/lib/commonjs/cli/chem-comp-dict/create-table.js CHANGED Viewed

@@ -20,10 +20,10 @@ var mmcif_extras_1 = require("../../mol-io/reader/cif/schema/mmcif-extras");
 var ccd_extras_1 = require("../../mol-io/reader/cif/schema/ccd-extras");
 var util_1 = require("./util");
 function ccbKey(compId, atomId1, atomId2) {
-    return atomId1 < atomId2 ? compId + ":" + atomId1 + "-" + atomId2 : compId + ":" + atomId2 + "-" + atomId1;
+    return atomId1 < atomId2 ? "".concat(compId, ":").concat(atomId1, "-").concat(atomId2) : "".concat(compId, ":").concat(atomId2, "-").concat(atomId1);
 }
 function ccaKey(compId, atomId) {
-    return compId + ":" + atomId;
+    return "".concat(compId, ":").concat(atomId);
 }
 function addChemCompBondToSet(set, ccb) {
     for (var i = 0, il = ccb._rowCount; i < il; ++i) {
@@ -68,7 +68,7 @@ function checkAddingBondsFromPVCD(pvcd) {
                     extraBonds.forEach(function (bk) {
                         var _a = bk.split('|'), a1 = _a[0], a2 = _a[1];
                         if (entryAtoms.has(a1) && entryAtoms.has(a2)) {
-                            console.error("Adding all PVCD bonds would wrongly add bond " + bk + " for " + k);
+                            console.error("Adding all PVCD bonds would wrongly add bond ".concat(bk, " for ").concat(k));
                         }
                     });
                 };

package/lib/commonjs/cli/chem-comp-dict/create-table.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/cli/chem-comp-dict/util.js CHANGED Viewed

@@ -27,7 +27,7 @@ function ensureAvailable(path, url, forceDownload) {
             switch (_g.label) {
                 case 0:
                     if (!(forceDownload || !fs.existsSync(path))) return [3 /*break*/, 8];
-                    console.log("downloading " + url + "...");
+                    console.log("downloading ".concat(url, "..."));
                     return [4 /*yield*/, (0, node_fetch_1.default)(url)];
                 case 1:
                     data = _g.sent();
@@ -52,7 +52,7 @@ function ensureAvailable(path, url, forceDownload) {
                     _g.sent();
                     _g.label = 7;
                 case 7:
-                    console.log("done downloading " + url);
+                    console.log("done downloading ".concat(url));
                     _g.label = 8;
                 case 8: return [2 /*return*/];
             }

package/lib/commonjs/cli/chem-comp-dict/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/cli/cif2bcif/converter.js CHANGED Viewed

@@ -17,8 +17,8 @@ var mol_task_1 = require("../../mol-task");
 var binary_cif_1 = require("../../mol-io/common/binary-cif");
 var encoder_1 = require("../../mol-io/writer/cif/encoder");
 function showProgress(p) {
-    process.stdout.write("\r" + new Array(80).join(' '));
-    process.stdout.write("\r" + mol_task_1.Progress.format(p));
+    process.stdout.write("\r".concat(new Array(80).join(' ')));
+    process.stdout.write("\r".concat(mol_task_1.Progress.format(p)));
 }
 var readFileAsync = util.promisify(fs.readFile);
 var unzipAsync = util.promisify(zlib.unzip);

package/lib/commonjs/cli/cif2bcif/converter.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"converter.js","sourceRoot":"","sources":["../../../../src/cli/cif2bcif/converter.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,+CAA+F;AAC/F,+CAA0E;AAC1E,sDAA6B;AAC7B,kDAAyB;AACzB,sDAA6B;AAC7B,2CAAgE;AAChE,6DAAsF;AAEtF,2DAA2D;AAG3D,SAAS,YAAY,CAAC,CAAW;IAC7B,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAK,IAAI,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAE,CAAC,CAAC;IACrD,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAK,mBAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;AACpD,CAAC;AAED,IAAM,aAAa,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC;AAClD,IAAM,UAAU,GAAG,IAAI,CAAC,SAAS,CAAyB,IAAI,CAAC,KAAK,CAAC,CAAC;AAEtE,SAAe,QAAQ,CAAC,GAAmB,EAAE,QAAgB;;;;;;oBACnD,IAAI,GAAG,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;yBACjC,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAxB,wBAAwB;oBACZ,qBAAM,aAAa,CAAC,QAAQ,CAAC,EAAA;;oBAArC,KAAK,GAAG,SAA6B;yBACrC,IAAI,EAAJ,wBAAI;oBAAU,qBAAM,UAAU,CAAC,KAAK,CAAC,EAAA;;oBAA/B,KAAK,GAAG,SAAuB,CAAC;;wBACnC,qBAAM,SAAG,CAAC,WAAW,CAAC,IAAI,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,YAAY,CAAC,GAAG,CAAC,EAAA;wBAArE,sBAAO,SAA8D,EAAC;;oBAElE,GAAG,SAAQ,CAAC;yBACZ,IAAI,EAAJ,wBAAI;oBACe,KAAA,UAAU,CAAA;oBAAC,qBAAM,aAAa,CAAC,QAAQ,CAAC,EAAA;wBAA9C,qBAAM,kBAAW,SAA6B,EAAC,EAAA;;oBAAtD,IAAI,GAAG,SAA+C;oBAC5D,GAAG,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;;wBAEtB,qBAAM,aAAa,CAAC,QAAQ,EAAE,MAAM,CAAC,EAAA;;oBAA3C,GAAG,GAAG,SAAqC,CAAC;;yBAEzC,qBAAM,SAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,YAAY,CAAC,GAAG,CAAC,EAAA;yBAAjD,sBAAO,SAA0C,EAAC;;;;CAEzD;AAED,SAAe,MAAM,CAAC,GAAmB,EAAE,QAAgB;;;;;wBACxC,qBAAM,QAAQ,CAAC,GAAG,EAAE,QAAQ,CAAC,EAAA;;oBAAtC,MAAM,GAAG,SAA6B;oBAC5C,IAAI,MAAM,CAAC,OAAO,EAAE;wBAChB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC;qBACtC;oBACD,sBAAO,MAAM,CAAC,MAAM,EAAC;;;;CACxB;AAED,SAAS,2BAA2B,CAAC,GAAgB,EAAE,MAAyB;IAC5E,OAAO;QACH,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,QAAQ,EAAE,cAAM,OAAA,eAAS,CAAC,gBAAgB,CAAC,MAAM,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,EAAE,CAAC,EAAzE,CAAyE;KAC5F,CAAC;AACN,CAAC;AAED,SAAS,QAAQ,CAAC,IAAY,EAAE,KAAe;IAC3C,IAAM,IAAI,GAAG,IAAA,qBAAe,EAAC,KAAK,CAAC,CAAC;IACpC,IAAI,IAAI,CAAC,OAAO,CAAC,KAAK,KAAK,EAAE;QACzB,OAAO,EAAE,IAAI,MAAA,EAAE,IAAI,aAA0B,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,CAAC;KACjG;SAAM,IAAI,IAAI,CAAC,OAAO,CAAC,KAAK,OAAO,EAAE;QAClC,IAAM,OAAO,GAAG,IAAA,+BAAkB,EAAC,KAAK,CAAC,YAAY,CAAC,EAAE,KAAK,EAAE,YAAY,EAAE,CAAC,CAAC,CAAC;QAChF,OAAO,eAAS,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,KAAK,EAAE,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,OAAO,SAAA,EAAE,UAAU,EAAE,YAAY,EAAE,CAAC,CAAC;KACtH;SAAM;QACH,IAAM,OAAO,GAAG,IAAA,6BAAgB,EAAC,KAAK,CAAC,UAAU,CAAC,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC,CAAC,CAAC;QAC1E,OAAO,eAAS,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,OAAO,SAAA,EAAE,UAAU,EAAE,UAAU,EAAE,CAAC,CAAC;KAChH;AACL,CAAC;AAED,SAAgB,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,KAA8B,EAAE,MAAe;IAArG,iBA8CC;IA9CqC,uBAAA,EAAA,cAAc;IAChD,OAAO,eAAI,CAAC,MAAM,CAAa,WAAW,EAAE,UAAM,GAAG;;;;;oBAC3C,gBAAgB,GAA2B,KAAK;wBAClD,CAAC,CAAC,eAAS,CAAC,oCAAoC,CAAC,KAAK,CAAC;wBACvD,CAAC,CAAC,EAAE,GAAG,EAAE,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,KAAK,CAAC,EAAN,CAAM,EAAE,CAAC;oBACpB,qBAAM,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,EAAA;;oBAA7B,GAAG,GAAG,SAAuB;oBAE7B,OAAO,GAAG,eAAS,CAAC,aAAa,CAAC;wBACpC,MAAM,EAAE,CAAC,MAAM;wBACf,WAAW,EAAE,wBAAwB;wBACrC,0BAA0B,EAAE,IAAI;wBAChC,qBAAqB,EAAE,gBAAgB;qBAC1C,CAAC,CAAC;oBAEH,IAAI,MAAM,EAAE;wBACR,OAAO,CAAC,SAAS,CAAC,kBAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;qBAChD;oBAEG,WAAW,GAAG,CAAC,CAAC;oBACpB,WAA0B,EAAV,KAAA,GAAG,CAAC,MAAM,EAAV,cAAU,EAAV,IAAU,EAAE;wBAAjB,CAAC;wBACR,WAAW,IAAI,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC;wBACtC,WAA+B,EAAf,KAAA,CAAC,CAAC,aAAa,EAAf,cAAe,EAAf,IAAe;4BAApB,CAAC;4BAAqB,WAAW,IAAI,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC;yBAAA;qBACrF;oBAEG,OAAO,GAAG,CAAC,CAAC;0BACU,EAAV,KAAA,GAAG,CAAC,MAAM;;;yBAAV,CAAA,cAAU,CAAA;oBAAf,CAAC;oBACR,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;0BACF,EAAf,KAAA,CAAC,CAAC,aAAa;;;yBAAf,CAAA,cAAe,CAAA;oBAApB,CAAC;oBACF,GAAG,GAAG,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;oBACtB,MAAM,GAAsB,EAAE,CAAC;0BACP,EAAd,KAAA,GAAG,CAAC,UAAU;;;yBAAd,CAAA,cAAc,CAAA;oBAAnB,CAAC;oBACR,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC;oBAC3C,OAAO,EAAE,CAAC;yBACN,GAAG,CAAC,YAAY,EAAhB,wBAAgB;oBAAE,qBAAM,GAAG,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,aAAa,EAAE,OAAO,SAAA,EAAE,GAAG,EAAE,WAAW,EAAE,CAAC,EAAA;;oBAAvE,SAAuE,CAAC;;;oBAHlF,IAAc,CAAA;;;oBAM9B,OAAO,CAAC,aAAa,CAAC,2BAA2B,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC;oBAC5E,OAAO,EAAE,CAAC;yBACN,GAAG,CAAC,YAAY,EAAhB,wBAAgB;oBAAE,qBAAM,GAAG,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,aAAa,EAAE,OAAO,SAAA,EAAE,GAAG,EAAE,WAAW,EAAE,CAAC,EAAA;;oBAAvE,SAAuE,CAAC;;;oBAXlF,IAAe,CAAA;;;oBAFnB,IAAU,CAAA;;yBAgB1B,qBAAM,GAAG,CAAC,MAAM,CAAC,cAAc,CAAC,EAAA;;oBAAhC,SAAgC,CAAC;oBAC3B,GAAG,GAAG,OAAO,CAAC,OAAO,EAAgB,CAAC;oBAC5C,qBAAM,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC,EAAA;;oBAA3B,SAA2B,CAAC;oBAC5B,sBAAO,GAAG,EAAC;;;SACd,CAAC,CAAC,GAAG,CAAC,YAAY,EAAE,GAAG,CAAC,CAAC;AAC9B,CAAC;AA9CD,0BA8CC"}

package/lib/commonjs/cli/cif2bcif/index.js CHANGED Viewed

File without changes

package/lib/commonjs/cli/cifschema/index.js CHANGED Viewed

@@ -63,7 +63,7 @@ function runGenerateSchemaMmcif(name, fieldNamesPath, typescript, out, moldbImpo
                     mmcifDicVersion = getDicVersion(mmcifDic.result.blocks[0]);
                     ihmDicVersion = getDicVersion(ihmDic.result.blocks[0]);
                     carbDicVersion = 'draft';
-                    version = "Dictionary versions: mmCIF " + mmcifDicVersion + ", IHM " + ihmDicVersion + ", CARB " + carbDicVersion + ".";
+                    version = "Dictionary versions: mmCIF ".concat(mmcifDicVersion, ", IHM ").concat(ihmDicVersion, ", CARB ").concat(carbDicVersion, ".");
                     frames = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], mmcifDic.result.blocks[0].saveFrames, true), ihmDic.result.blocks[0].saveFrames, true), carbBranchDic.result.blocks[0].saveFrames, true), carbCompDic.result.blocks[0].saveFrames, true);
                     schema = (0, cif_dic_1.generateSchema)(frames);
                     return [4 /*yield*/, runGenerateSchema(name, version, schema, fieldNamesPath, typescript, out, moldbImportPath, addAliases)];
@@ -89,7 +89,7 @@ function runGenerateSchemaCifCore(name, fieldNamesPath, typescript, out, moldbIm
                     if (cifCoreDic.isError)
                         throw cifCoreDic;
                     cifCoreDicVersion = getDicVersion(cifCoreDic.result.blocks[0]);
-                    version = "Dictionary versions: CifCore " + cifCoreDicVersion + ".";
+                    version = "Dictionary versions: CifCore ".concat(cifCoreDicVersion, ".");
                     frames = (0, tslib_1.__spreadArray)([], cifCoreDic.result.blocks[0].saveFrames, true);
                     return [4 /*yield*/, resolveImports(frames, DIC_DIR)];
                 case 3:
@@ -158,7 +158,7 @@ function runGenerateSchemaDic(name, dicPath, fieldNamesPath, typescript, out, mo
                         throw dic;
                     dicVersion = getDicVersion(dic.result.blocks[0]);
                     dicName = getDicNamespace(dic.result.blocks[0]);
-                    version = "Dictionary versions: " + dicName + " " + dicVersion + ".";
+                    version = "Dictionary versions: ".concat(dicName, " ").concat(dicVersion, ".");
                     frames = (0, tslib_1.__spreadArray)([], dic.result.blocks[0].saveFrames, true);
                     return [4 /*yield*/, resolveImports(frames, path.dirname(dicPath))];
                 case 2:
@@ -297,7 +297,7 @@ function ensureDicAvailable(dicPath, dicUrl) {
                 case 0:
                     if (!(FORCE_DIC_DOWNLOAD || !fs.existsSync(dicPath))) return [3 /*break*/, 3];
                     name_1 = dicUrl.substr(dicUrl.lastIndexOf('/') + 1);
-                    console.log("downloading " + name_1 + "...");
+                    console.log("downloading ".concat(name_1, "..."));
                     return [4 /*yield*/, (0, node_fetch_1.default)(dicUrl)];
                 case 1:
                     data = _d.sent();
@@ -309,7 +309,7 @@ function ensureDicAvailable(dicPath, dicUrl) {
                     return [4 /*yield*/, data.text()];
                 case 2:
                     _b.apply(_a, _c.concat([_d.sent()]));
-                    console.log("done downloading " + name_1);
+                    console.log("done downloading ".concat(name_1));
                     _d.label = 3;
                 case 3: return [2 /*return*/];
             }
@@ -317,19 +317,19 @@ function ensureDicAvailable(dicPath, dicUrl) {
     });
 }
 var DIC_DIR = path.resolve(__dirname, '../../../../build/dics/');
-var MMCIF_DIC_PATH = DIC_DIR + "/mmcif_pdbx_v50.dic";
+var MMCIF_DIC_PATH = "".concat(DIC_DIR, "/mmcif_pdbx_v50.dic");
 var MMCIF_DIC_URL = 'http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic';
-var IHM_DIC_PATH = DIC_DIR + "/ihm-extension.dic";
+var IHM_DIC_PATH = "".concat(DIC_DIR, "/ihm-extension.dic");
 var IHM_DIC_URL = 'https://raw.githubusercontent.com/ihmwg/IHM-dictionary/master/ihm-extension.dic';
-var CARB_BRANCH_DIC_PATH = DIC_DIR + "/entity_branch-extension.dic";
+var CARB_BRANCH_DIC_PATH = "".concat(DIC_DIR, "/entity_branch-extension.dic");
 var CARB_BRANCH_DIC_URL = 'https://raw.githubusercontent.com/pdbxmmcifwg/carbohydrate-extension/master/dict/entity_branch-extension.dic';
-var CARB_COMP_DIC_PATH = DIC_DIR + "/chem_comp-extension.dic";
+var CARB_COMP_DIC_PATH = "".concat(DIC_DIR, "/chem_comp-extension.dic");
 var CARB_COMP_DIC_URL = 'https://raw.githubusercontent.com/pdbxmmcifwg/carbohydrate-extension/master/dict/chem_comp-extension.dic';
-var CIF_CORE_DIC_PATH = DIC_DIR + "/cif_core.dic";
+var CIF_CORE_DIC_PATH = "".concat(DIC_DIR, "/cif_core.dic");
 var CIF_CORE_DIC_URL = 'https://raw.githubusercontent.com/COMCIFS/cif_core/master/cif_core.dic';
-var CIF_CORE_ENUM_PATH = DIC_DIR + "/templ_enum.cif";
+var CIF_CORE_ENUM_PATH = "".concat(DIC_DIR, "/templ_enum.cif");
 var CIF_CORE_ENUM_URL = 'https://raw.githubusercontent.com/COMCIFS/cif_core/master/templ_enum.cif';
-var CIF_CORE_ATTR_PATH = DIC_DIR + "/templ_attr.cif";
+var CIF_CORE_ATTR_PATH = "".concat(DIC_DIR, "/templ_attr.cif");
 var CIF_CORE_ATTR_URL = 'https://raw.githubusercontent.com/COMCIFS/cif_core/master/templ_attr.cif';
 var parser = new argparse.ArgumentParser({
     add_help: true,

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package/lib/commonjs/cli/cifschema/util/cif-dic.js CHANGED Viewed

@@ -89,7 +89,7 @@ function getFieldType(type, description, values, container) {
         case 'Integer':
             return wrapContainer('int', ',', description, container);
     }
-    console.log("unknown type '" + type + "'");
+    console.log("unknown type '".concat(type, "'"));
     return (0, schema_1.StrCol)(description);
 }
 exports.getFieldType = getFieldType;
@@ -112,17 +112,17 @@ function getImportFrames(d, imports) {
     var _loop_1 = function (g) {
         var file = g.file, save = g.save;
         if (!file || !save) {
-            console.warn("missing 'save' or 'file' for import in '" + d.header + "'");
+            console.warn("missing 'save' or 'file' for import in '".concat(d.header, "'"));
             return "continue";
         }
         var importFrames = imports.get(file);
         if (!importFrames) {
-            console.warn("missing '" + file + "' entry in imports");
+            console.warn("missing '".concat(file, "' entry in imports"));
             return "continue";
         }
         var importSave = importFrames.find(function (id) { return id.header.toLowerCase() === save.toLowerCase(); });
         if (!importSave) {
-            console.warn("missing '" + save + "' save frame in '" + file + "'");
+            console.warn("missing '".concat(save, "' save frame in '").concat(file, "'"));
             return "continue";
         }
         frames.push(importSave);
@@ -181,7 +181,7 @@ function getCode(d, imports, ctx) {
         return [code.str(0), getEnums(d, imports, ctx), getContainer(d, imports, ctx)];
     }
     else {
-        console.log("item_type.code or type.contents not found for '" + d.header + "'");
+        console.log("item_type.code or type.contents not found for '".concat(d.header, "'"));
     }
 }
 function getSubCategory(d, imports, ctx) {
@@ -310,7 +310,7 @@ function generateSchema(frames, imports) {
             }
             descriptionField = category.getField('description');
             if (categoryKeyNames.size === 0) {
-                console.log("no key given for category '" + categoryName + "'");
+                console.log("no key given for category '".concat(categoryName, "'"));
             }
         }
         if ('description' in d.categories) {
@@ -322,7 +322,7 @@ function generateSchema(frames, imports) {
                 .replace(/(\r\n|\r|\n)([ \t]+)/g, '\n'); // remove padding after newlines
         }
         else {
-            console.log("no description given for category '" + categoryName + "'");
+            console.log("no description given for category '".concat(categoryName, "'"));
         }
         tables[categoryName] = { description: description, key: categoryKeyNames, columns: {} };
         // console.log('++++++++++++++++++++++++++++++++++++++++++')
@@ -344,7 +344,7 @@ function generateSchema(frames, imports) {
                     var childName = child_name.str(i);
                     var parentName = parent_name.str(i);
                     if (childName in links && links[childName] !== parentName) {
-                        console.log(childName + " linked to " + links[childName] + ", ignoring link to " + parentName);
+                        console.log("".concat(childName, " linked to ").concat(links[childName], ", ignoring link to ").concat(parentName));
                     }
                     links[childName] = parentName;
                 }
@@ -356,7 +356,7 @@ function generateSchema(frames, imports) {
         var _a;
         var d = categories[fullName];
         if (!d) {
-            console.log("'" + fullName + "' not found, moving on");
+            console.log("'".concat(fullName, "' not found, moving on"));
             return;
         }
         var categoryName = d.header.substring(d.header[0] === '_' ? 1 : 0, d.header.indexOf('.'));
@@ -372,7 +372,7 @@ function generateSchema(frames, imports) {
             fields = tables[categoryName].columns;
         }
         else {
-            console.log("category '" + categoryName + "' has no metadata");
+            console.log("category '".concat(categoryName, "' has no metadata"));
             fields = {};
             tables[categoryName] = {
                 description: '',
@@ -382,7 +382,7 @@ function generateSchema(frames, imports) {
         }
         var itemAliases = getAliases(d, imports, ctx);
         if (itemAliases)
-            aliases[categoryName + "." + itemName] = itemAliases;
+            aliases["".concat(categoryName, ".").concat(itemName)] = itemAliases;
         var description = getDescription(d, imports, ctx) || '';
         // need to use regex to check for matrix or vector items
         // as sub_category assignment is missing for some entries
@@ -392,12 +392,12 @@ function generateSchema(frames, imports) {
         }
         else if (FORCE_INT_FIELDS.includes(d.header)) {
             fields[itemName] = (0, schema_1.IntCol)(description);
-            console.log("forcing int: " + d.header);
+            console.log("forcing int: ".concat(d.header));
         }
         else if (FORCE_MATRIX_FIELDS.includes(d.header)) {
             fields[itemName] = (0, schema_1.FloatCol)(description);
             fields[FORCE_MATRIX_FIELDS_MAP[d.header]] = (0, schema_1.MatrixCol)(3, 3, description);
-            console.log("forcing matrix: " + d.header);
+            console.log("forcing matrix: ".concat(d.header));
         }
         else if (subCategory === 'matrix') {
             fields[itemName.replace(reMatrixField, '')] = (0, schema_1.MatrixCol)(3, 3, description);
@@ -408,11 +408,11 @@ function generateSchema(frames, imports) {
         else {
             if (itemName.match(reMatrixField)) {
                 fields[itemName.replace(reMatrixField, '')] = (0, schema_1.MatrixCol)(3, 3, description);
-                console.log(d.header + " should have 'matrix' _item_sub_category.id");
+                console.log("".concat(d.header, " should have 'matrix' _item_sub_category.id"));
             }
             else if (itemName.match(reVectorField)) {
                 fields[itemName.replace(reVectorField, '')] = (0, schema_1.VectorCol)(3, description);
-                console.log(d.header + " should have 'vector' _item_sub_category.id");
+                console.log("".concat(d.header, " should have 'vector' _item_sub_category.id"));
             }
             else {
                 var code = getCode(d, imports, ctx);
@@ -421,15 +421,15 @@ function generateSchema(frames, imports) {
                     if (fieldType.type === 'str') {
                         if (COMMA_SEPARATED_LIST_FIELDS.includes(d.header)) {
                             fieldType = (0, schema_1.ListCol)('str', ',', description);
-                            console.log("forcing comma separated: " + d.header);
+                            console.log("forcing comma separated: ".concat(d.header));
                         }
                         else if (SPACE_SEPARATED_LIST_FIELDS.includes(d.header)) {
                             fieldType = (0, schema_1.ListCol)('str', ' ', description);
-                            console.log("forcing space separated: " + d.header);
+                            console.log("forcing space separated: ".concat(d.header));
                         }
                         else if (SEMICOLON_SEPARATED_LIST_FIELDS.includes(d.header)) {
                             fieldType = (0, schema_1.ListCol)('str', ';', description);
-                            console.log("forcing space separated: " + d.header);
+                            console.log("forcing space separated: ".concat(d.header));
                         }
                     }
                     if (d.header in EXTRA_ENUM_VALUES) {
@@ -437,7 +437,7 @@ function generateSchema(frames, imports) {
                             (_a = fieldType.values).push.apply(_a, EXTRA_ENUM_VALUES[d.header]);
                         }
                         else {
-                            console.warn("expected enum: " + d.header);
+                            console.warn("expected enum: ".concat(d.header));
                         }
                     }
                     fields[itemName] = fieldType;

package/lib/commonjs/cli/cifschema/util/cif-dic.js.map CHANGED Viewed

	@@ -1 +1 @@
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