npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/commonjs/mol-model/structure/structure/element/loci.js.map CHANGED Viewed

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1	- 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package/lib/commonjs/mol-model/structure/structure/element/util.js CHANGED Viewed

@@ -11,7 +11,7 @@ var unit_1 = require("../unit");
 var properties_1 = require("../properties");
 function property(p) { return p; }
 exports.property = property;
-function _wrongUnitKind(kind) { throw new Error("Property only available for " + kind + " models."); }
+function _wrongUnitKind(kind) { throw new Error("Property only available for ".concat(kind, " models.")); }
 function atomicProperty(p) {
     return property(function (l) { return unit_1.Unit.isAtomic(l.unit) ? p(l) : _wrongUnitKind('atomic'); });
 }

package/lib/commonjs/mol-model/structure/structure/element/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/structure/element/util.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAIH,gCAA+B;AAE/B,4CAAoD;AAWpD,SAAgB,QAAQ,CAAI,CAAc,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC;AAAzD,4BAAyD;AAEzD,SAAS,cAAc,CAAC,IAAY,IAAI,MAAM,IAAI,KAAK,CAAC,~~iCAA~~+B,IAAI,aAAU,CAAC,CAAC,CAAC,CAAC;AACzG,SAAgB,cAAc,CAAI,CAAyC;IACvE,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA0B,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAhF,CAAgF,CAAC,CAAC;AAC3G,CAAC;AAFD,wCAEC;AAED,SAAgB,cAAc,CAAI,CAA2D;IACzF,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA4C,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAlG,CAAkG,CAAC,CAAC;AAC7H,CAAC;AAFD,wCAEC;AAED,SAAgB,YAAY,CAAC,CAAW;IACpC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACzC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAiB,CAAC;KAC7B;AACL,CAAC;AAPD,oCAOC;AAED,SAAgB,UAAU,CAAC,CAAW;IAClC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACvC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAe,CAAC;KAC3B;AACL,CAAC;AAPD,gCAOC;AAED,SAAgB,WAAW,CAAC,CAAW;IACnC,OAAO,gCAAmB,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;AAC7C,CAAC;AAFD,kCAEC"}
1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/structure/element/util.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAIH,gCAA+B;AAE/B,4CAAoD;AAWpD,SAAgB,QAAQ,CAAI,CAAc,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC;AAAzD,4BAAyD;AAEzD,SAAS,cAAc,CAAC,IAAY,IAAI,MAAM,IAAI,KAAK,CAAC,sCAA+B,IAAI,aAAU,CAAC,CAAC,CAAC,CAAC;AACzG,SAAgB,cAAc,CAAI,CAAyC;IACvE,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA0B,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAhF,CAAgF,CAAC,CAAC;AAC3G,CAAC;AAFD,wCAEC;AAED,SAAgB,cAAc,CAAI,CAA2D;IACzF,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA4C,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAlG,CAAkG,CAAC,CAAC;AAC7H,CAAC;AAFD,wCAEC;AAED,SAAgB,YAAY,CAAC,CAAW;IACpC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACzC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAiB,CAAC;KAC7B;AACL,CAAC;AAPD,oCAOC;AAED,SAAgB,UAAU,CAAC,CAAW;IAClC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACvC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAe,CAAC;KAC3B;AACL,CAAC;AAPD,gCAOC;AAED,SAAgB,WAAW,CAAC,CAAW;IACnC,OAAO,gCAAmB,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;AAC7C,CAAC;AAFD,kCAEC"}

package/lib/commonjs/mol-model/structure/structure/properties.d.ts CHANGED Viewed

@@ -68,7 +68,7 @@ declare const StructureProperties: {
         id: StructureElement.Property<number>;
         chainGroupId: StructureElement.Property<number>;
         multiChain: StructureElement.Property<boolean>;
-        object_primitive: StructureElement.Property<"atomistic" | "sphere" | "gaussian">;
+        object_primitive: StructureElement.Property<"sphere" | "atomistic" | "gaussian">;
         operator_name: StructureElement.Property<string>;
         model_index: StructureElement.Property<number>;
         model_label: StructureElement.Property<string>;

package/lib/commonjs/mol-model/structure/structure/properties.js CHANGED Viewed

@@ -22,7 +22,7 @@ function notAtomic() {
 }
 function notCoarse(kind) {
     if (!!kind)
-        throw new Error("Property only available for coarse models (" + kind + ").");
+        throw new Error("Property only available for coarse models (".concat(kind, ")."));
     throw new Error('Property only available for coarse models.');
 }
 // TODO: remove the type checks?

package/lib/commonjs/mol-model/structure/structure/properties.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-model/structure/structure/structure.js CHANGED Viewed

@@ -476,7 +476,7 @@ var Structure = /** @class */ (function () {
         return this.models.indexOf(m);
     };
     Structure.prototype.remapModel = function (m) {
-        var _a = this.state, dynamicBonds = _a.dynamicBonds, interUnitBonds = _a.interUnitBonds;
+        var _a = this.state, dynamicBonds = _a.dynamicBonds, interUnitBonds = _a.interUnitBonds, parent = _a.parent;
         var units = [];
         for (var _b = 0, _c = this.unitSymmetryGroups; _b < _c.length; _b++) {
             var ug = _c[_b];
@@ -488,6 +488,7 @@ var Structure = /** @class */ (function () {
             }
         }
         return Structure.create(units, {
+            parent: parent === null || parent === void 0 ? void 0 : parent.remapModel(m),
             label: this.label,
             interUnitBonds: dynamicBonds ? undefined : interUnitBonds,
             dynamicBonds: dynamicBonds
@@ -1227,7 +1228,7 @@ function getSerialMapping(structure) {
     }
     Structure.distance = distance;
     function elementDescription(s) {
-        return s.elementCount === 1 ? '1 element' : s.elementCount + " elements";
+        return s.elementCount === 1 ? '1 element' : "".concat(s.elementCount, " elements");
     }
     Structure.elementDescription = elementDescription;
     function validUnitPair(s, a, b) {

package/lib/commonjs/mol-model/structure/structure/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/symmetry.js CHANGED Viewed

@@ -31,7 +31,7 @@ var StructureSymmetry;
                     throw new Error('Can only build assemblies from structures based on 1 model.');
                 assembly = model_1.Symmetry.findAssembly(models[0], asmName);
                 if (!assembly)
-                    throw new Error("Assembly '" + asmName + "' is not defined.");
+                    throw new Error("Assembly '".concat(asmName, "' is not defined."));
                 coordinateSystem = geometry_1.SymmetryOperator.create(assembly.id, linear_algebra_1.Mat4.identity(), { assembly: { id: assembly.id, operId: 0, operList: [] } });
                 assembler = structure_1.Structure.Builder({
                     coordinateSystem: coordinateSystem,
@@ -167,7 +167,7 @@ function getOperatorsForIndex(symmetry, index, i, j, k, modelCenter) {
         for (var u = 0, ul = ncsOperators.length; u < ul; ++u) {
             var ncsOp = ncsOperators[u];
             var matrix = linear_algebra_1.Mat4.mul((0, linear_algebra_1.Mat4)(), symOp.matrix, ncsOp.matrix);
-            var operator = geometry_1.SymmetryOperator.create(symOp.name + " " + ncsOp.name, matrix, {
+            var operator = geometry_1.SymmetryOperator.create("".concat(symOp.name, " ").concat(ncsOp.name), matrix, {
                 assembly: symOp.assembly,
                 ncsId: ncsOp.ncsId,
                 hkl: symOp.hkl,
@@ -271,7 +271,7 @@ function findSymmetryRange(ctx, structure, ijkMin, ijkMax) {
 function findMatesRadius(ctx, structure, radius) {
     return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
         function hash(unit, oper) {
-            return unit.invariantId + "|" + oper.name;
+            return "".concat(unit.invariantId, "|").concat(oper.name);
         }
         var models, symmetry, spacegroup, modelCenter, operators, lookup, added, assembler, units, center, _i, operators_3, oper, _a, units_4, unit, boundingSphere, closeUnits, uI, _uI, closeUnit, h;
         return (0, tslib_1.__generator)(this, function (_b) {

package/lib/commonjs/mol-model/structure/structure/symmetry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js CHANGED Viewed

@@ -113,7 +113,7 @@ function buildIndex(structure, index, sI) {
                 var rI = residueOffset[eI];
                 if (!dbName[rI])
                     continue;
-                var key = dbName[rI] + "-" + accession[rI] + "-" + num[rI];
+                var key = "".concat(dbName[rI], "-").concat(accession[rI], "-").concat(num[rI]);
                 if (!index.has(key)) {
                     index.set(key, { key: key, pivots: (_a = {}, _a[sI] = [unit, eI, elements[residueSegment.end]], _a) });
                 }