molstar 2.3.5 → 2.3.9

package/lib/mol-plugin-state/actions/structure.js

@@ -88,35 +88,35 @@ var DownloadStructure = StateAction.build({
                         case 'pdb':
                             downloadParams = src.params.provider.server.name === 'pdbe'
                                 ? src.params.provider.server.params.variant === 'updated'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + "_updated.cif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, false)
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), "_updated.cif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, false)
                                     : src.params.provider.server.params.variant === 'updated-bcif'
-                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/" + id.toLowerCase() + ".bcif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, true)
-                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + ".cif"; }, function (id) { return "PDBe: " + id + " (cif)"; }, false)
+                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/".concat(id.toLowerCase(), ".bcif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, true)
+                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), ".cif"); }, function (id) { return "PDBe: ".concat(id, " (cif)"); }, false)
                                 : src.params.provider.server.params.encoding === 'cif'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/" + id.toUpperCase() + ".cif"; }, function (id) { return "RCSB: " + id + " (cif)"; }, false)
-                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/" + id.toUpperCase() + ".bcif"; }, function (id) { return "RCSB: " + id + " (bcif)"; }, true);
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/".concat(id.toUpperCase(), ".cif"); }, function (id) { return "RCSB: ".concat(id, " (cif)"); }, false)
+                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/".concat(id.toUpperCase(), ".bcif"); }, function (id) { return "RCSB: ".concat(id, " (bcif)"); }, true);
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'pdb-dev':
                             downloadParams = getDownloadParams(src.params.provider.id, function (id) {
-                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0');
+                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0'));
                                 return src.params.provider.encoding === 'bcif'
-                                    ? "https://pdb-dev.wwpdb.org/bcif/" + nId.toUpperCase() + ".bcif"
-                                    : "https://pdb-dev.wwpdb.org/cif/" + nId.toUpperCase() + ".cif";
-                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0'); }, src.params.provider.encoding === 'bcif');
+                                    ? "https://pdb-dev.wwpdb.org/bcif/".concat(nId.toUpperCase(), ".bcif")
+                                    : "https://pdb-dev.wwpdb.org/cif/".concat(nId.toUpperCase(), ".cif");
+                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0')); }, src.params.provider.encoding === 'bcif');
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'swissmodel':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/" + id.toUpperCase() + ".pdb"; }, function (id) { return "SWISS-MODEL: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/".concat(id.toUpperCase(), ".pdb"); }, function (id) { return "SWISS-MODEL: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'pdb';
                             break;
                         case 'pubchem':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/" + id.trim() + "/record/SDF/?record_type=3d"; }, function (id) { return "PubChem: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/".concat(id.trim(), "/record/SDF/?record_type=3d"); }, function (id) { return "PubChem: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'mol';
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     representationPreset = params.source.params.options.representation || PresetStructureRepresentations.auto.id;
                     showUnitcell = representationPreset !== PresetStructureRepresentations.empty.id;

package/lib/mol-plugin-state/actions/structure.js.map

@@ -1 +1 @@
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package/lib/mol-plugin-state/actions/volume.js

@@ -72,41 +72,41 @@ var DownloadDensity = StateAction.build({
                         case 'pdb-xray':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + ".ccp4"
-                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + "_diff.ccp4"),
+                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), ".ccp4")
+                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), "_diff.ccp4")),
                                 isBinary: true,
-                                label: "PDBe X-ray map: " + src.params.provider.id
+                                label: "PDBe X-ray map: ".concat(src.params.provider.id)
                             } : {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_2fofc.dsn6"
-                                    : "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_fofc.dsn6"),
+                                    ? "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_2fofc.dsn6")
+                                    : "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_fofc.dsn6")),
                                 isBinary: true,
-                                label: "RCSB X-ray map: " + src.params.provider.id
+                                label: "RCSB X-ray map: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-emd-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe EMD Density Server: " + src.params.provider.id
+                                label: "PDBe EMD Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/em/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/em/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB EMD Density Server: " + src.params.provider.id
+                                label: "RCSB PDB EMD Density Server: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-xray-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe X-ray Density Server: " + src.params.provider.id
+                                label: "PDBe X-ray Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB X-ray Density Server: " + src.params.provider.id
+                                label: "RCSB PDB X-ray Density Server: ".concat(src.params.provider.id)
                             };
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     return [4 /*yield*/, plugin.builders.data.download(downloadParams)];
                 case 1:
@@ -128,7 +128,7 @@ var DownloadDensity = StateAction.build({
                             entryId = src.params.provider.id;
                             provider = plugin.dataFormats.get('dscif');
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     if (!provider) {
                         plugin.log.warn('DownloadDensity: Format provider not found.');

package/lib/mol-plugin-state/actions/volume.js.map

@@ -1 +1 @@
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+{"version":3,"file":"volume.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/actions/volume.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;;AAGH,OAAO,EAAE,WAAW,EAAoB,cAAc,EAAE,MAAM,iBAAiB,CAAC;AAChF,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAG/C,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAC;AAC9C,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAIhD,OAAO,EAAE,eAAe,EAAE,CAAC;AAE3B,IAAM,eAAe,GAAG,WAAW,CAAC,KAAK,CAAC;IACtC,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,OAAO,EAAE,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,wEAAwE,EAAE;IAC5H,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QAClB,IAAA,OAAO,GAAK,GAAG,CAAC,WAAW,QAApB,CAAqB;QACpC,OAAO;YACH,MAAM,EAAE,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE;gBAChC,UAAU,EAAE,EAAE,CAAC,KAAK,CAAC;oBACjB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACpC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBACtE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,IAAI,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,EAAE,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;iBACrE,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,aAAa,EAAE,EAAE,CAAC,KAAK,CAAC;oBACpB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACpC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBACtE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,MAAM,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC;iBAC1E,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,YAAY,EAAE,EAAE,CAAC,KAAK,CAAC;oBACnB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACxC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAuB,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBAC5F,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,MAAM,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC;iBAC1E,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC;oBACZ,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;oBACf,QAAQ,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;oBAC3B,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;iBACrC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;aACvB,EAAE;gBACC,OAAO,EAAE;oBACL,CAAC,UAAU,EAAE,gBAAgB,CAAC;oBAC9B,CAAC,YAAY,EAAE,wBAAwB,CAAC;oBACxC,CAAC,aAAa,EAAE,0BAA0B,CAAC;oBAC3C,CAAC,KAAK,EAAE,KAAK,CAAC;iBACjB;aACJ,CAAC;SACL,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAU,EAAE,MAAqB;QAA/B,MAAM,YAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,UAAM,OAAO;;;;;;oBAC7E,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC;oBAI1B,QAAQ,GAAG,CAAC,IAAI,EAAE;wBACd,KAAK,KAAK;4BACN,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC;4BAC5B,MAAM;wBACV,KAAK,UAAU;4BACX,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,KAAK,OAAO;oCACtC,CAAC,CAAC,sDAA+C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,UAAO;oCAC5F,CAAC,CAAC,sDAA+C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,eAAY,CAAC;gCACtG,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,0BAAmB,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACrD,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,KAAK,OAAO;oCACtC,CAAC,CAAC,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,gBAAa;oCACnF,CAAC,CAAC,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,eAAY,CAAC;gCACvF,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,0BAAmB,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACrD,CAAC;4BACF,MAAM;wBACV,KAAK,YAAY;4BACb,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,mDAA4C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACnI,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,mCAA4B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAC9D,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,mCAA4B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACnH,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAClE,CAAC;4BACF,MAAM;wBACV,KAAK,aAAa;4BACd,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,qDAA8C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACrI,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,qCAA8B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAChE,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,sCAA+B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACtH,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,yCAAkC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACpE,CAAC;4BACF,MAAM;wBACV,OAAO,CAAC,CAAC,MAAM,IAAI,KAAK,CAAC,UAAI,GAAW,CAAC,IAAI,oBAAiB,CAAC,CAAC;qBACnE;oBAEY,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAA;;oB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package/lib/mol-plugin-state/animation/built-in/model-index.d.ts

@@ -12,12 +12,12 @@ export declare const AnimateModelIndex: PluginStateAnimation<{
         direction: any;
     }>, "once">;
     duration: PD.NamedParams<PD.Normalize<{
-        targetFps: any;
-    }>, "computed"> | PD.NamedParams<PD.Normalize<{
+        durationInS: any;
+    }>, "fixed"> | PD.NamedParams<PD.Normalize<{
         maxFps: any;
     }>, "sequential"> | PD.NamedParams<PD.Normalize<{
-        durationInS: any;
-    }>, "fixed">;
+        targetFps: any;
+    }>, "computed">;
 }, {
     palindromeDirections?: {
         [id: string]: 1 | -1 | undefined;

package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts

@@ -48,17 +48,17 @@ export declare const PresetTrajectoryHierarchy: {
         showUnitcell: boolean | undefined;
         structure: PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             ijkMin: any;
             ijkMax: any;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             id: any;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
             radius: any;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;

package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts

@@ -30,17 +30,17 @@ export declare class TrajectoryHierarchyBuilder {
         showUnitcell: boolean | undefined;
         structure: PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             ijkMin: any;
             ijkMax: any;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             id: any;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
             radius: any;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;

package/lib/mol-plugin-state/builder/structure/hierarchy.js

@@ -78,7 +78,7 @@ var TrajectoryHierarchyBuilder = /** @class */ (function () {
     };
     TrajectoryHierarchyBuilder.prototype.registerPreset = function (provider) {
         if (this.providerMap.has(provider.id)) {
-            throw new Error("Hierarchy provider with id '" + provider.id + "' already registered.");
+            throw new Error("Hierarchy provider with id '".concat(provider.id, "' already registered."));
         }
         this._providers.push(provider);
         this.providerMap.set(provider.id, provider);
@@ -102,7 +102,7 @@ var TrajectoryHierarchyBuilder = /** @class */ (function () {
         var prms = params || (provider.params
             ? PD.getDefaultValues(provider.params(cell.obj, this.plugin))
             : {});
-        var task = Task.create("" + provider.display.name, function () { return provider.apply(cell, prms, _this.plugin); });
+        var task = Task.create("".concat(provider.display.name), function () { return provider.apply(cell, prms, _this.plugin); });
         return this.plugin.runTask(task);
     };
     return TrajectoryHierarchyBuilder;

package/lib/mol-plugin-state/builder/structure/hierarchy.js.map

@@ -1 +1 @@
-{"version":3,"file":"hierarchy.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/builder/structure/hierarchy.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEnD,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAE3E,OAAO,EAAE,yBAAyB,EAAqC,MAAM,oBAAoB,CAAC;AAClG,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAM7D;IAuFI,oCAAmB,MAAqB;QAAxC,iBAEC;QAFkB,WAAM,GAAN,MAAM,CAAe;QAtFhC,eAAU,GAAwC,EAAE,CAAC;QACrD,gBAAW,GAAmD,IAAI,GAAG,EAAE,CAAC;QAEvE,oBAAe,GAAG,yBAAyB,CAAC,OAAO,CAAC;QAoFzD,aAAa,CAAC,yBAAyB,EAAE,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAtB,CAAsB,CAAC,CAAC;IAC1E,CAAC;IAnFO,oDAAe,GAAvB,UAAwB,GAAyC;;QAC7D,OAAO,OAAO,GAAG,KAAK,QAAQ;YAC1B,CAAC,CAAC,MAAA,yBAAyB,CAAC,GAAsC,CAAC,mCAAI,SAAS,CAAC,IAAI,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,KAAK,GAAG,EAAZ,CAAY,CAAC;YACpH,CAAC,CAAC,GAAG,CAAC;IACd,CAAC;IAED,8CAAS,GAAT,UAAU,CAAwC;QAC9C,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,OAAO,IAAI,CAAC;SACtE;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,sBAAI,iDAAS;aAAb,cAAoE,OAAO,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;;;OAAA;IAE7F,+CAAU,GAAV,UAAW,CAAyC;QAChD,IAAI,CAAC,CAAC;YAAE,OAAO,IAAI,CAAC,SAAS,CAAC;QAC9B,IAAM,GAAG,GAAG,EAAE,CAAC;QACf,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAChE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACf;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,oDAAe,GAAf,UAAgB,CAAyC;QACrD,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;SACxC;QACD,OAAO,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,0DAAqB,GAArB,UAAsB,CAAwC;QAC1D,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,IAAM,GAAG,GAA8B,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAC3D,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAEhE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;YACrC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC;SAC/E;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,CAAC,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC;QAC9E,OAAO,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,OAAO,SAAA,EAAE,CAAC,CAAC;IAC5D,CAAC;IAED,mDAAc,GAAd,UAAe,QAA2C;QACtD,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE;YACnC,MAAM,IAAI,KAAK,CAAC,iCAA+B,QAAQ,CAAC,EAAE,0BAAuB,CAAC,CAAC;SACtF;QACD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/B,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;IAChD,CAAC;IAED,qDAAgB,GAAhB,UAAiB,QAA2C;QACxD,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;QACrC,kBAAkB,CAAC,IAAI,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAClD,CAAC;IAID,gDAAW,GAAX,UAAY,MAAsB,EAAE,WAAuD,EAAE,MAAY;QAAzG,iBAiBC;QAhBG,IAAM,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;QACnD,IAAI,CAAC,QAAQ;YAAE,OAAO;QAEtB,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAC3D,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,CAAC,gBAAgB;gBAAE,OAAO,CAAC,IAAI,CAAC,iDAAiD,CAAC,CAAC;YACvF,OAAO;SACV;QAED,IAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM;YACnC,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAc,CAAC;YAC1E,CAAC,CAAC,EAAE,CAAC,CAAC;QAEV,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,KAAG,QAAQ,CAAC,OAAO,CAAC,IAAM,EAAE,cAAM,OAAA,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,KAAI,CAAC,MAAM,CAAiB,EAAvD,CAAuD,CAAC,CAAC;QACpH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IACrC,CAAC;IAKL,iCAAC;AAAD,CAAC,AA1FD,IA0FC"}
+{"version":3,"file":"hierarchy.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/builder/structure/hierarchy.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEnD,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAE3E,OAAO,EAAE,yBAAyB,EAAqC,MAAM,oBAAoB,CAAC;AAClG,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAM7D;IAuFI,oCAAmB,MAAqB;QAAxC,iBAEC;QAFkB,WAAM,GAAN,MAAM,CAAe;QAtFhC,eAAU,GAAwC,EAAE,CAAC;QACrD,gBAAW,GAAmD,IAAI,GAAG,EAAE,CAAC;QAEvE,oBAAe,GAAG,yBAAyB,CAAC,OAAO,CAAC;QAoFzD,aAAa,CAAC,yBAAyB,EAAE,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAtB,CAAsB,CAAC,CAAC;IAC1E,CAAC;IAnFO,oDAAe,GAAvB,UAAwB,GAAyC;;QAC7D,OAAO,OAAO,GAAG,KAAK,QAAQ;YAC1B,CAAC,CAAC,MAAA,yBAAyB,CAAC,GAAsC,CAAC,mCAAI,SAAS,CAAC,IAAI,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,KAAK,GAAG,EAAZ,CAAY,CAAC;YACpH,CAAC,CAAC,GAAG,CAAC;IACd,CAAC;IAED,8CAAS,GAAT,UAAU,CAAwC;QAC9C,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,OAAO,IAAI,CAAC;SACtE;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,sBAAI,iDAAS;aAAb,cAAoE,OAAO,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;;;OAAA;IAE7F,+CAAU,GAAV,UAAW,CAAyC;QAChD,IAAI,CAAC,CAAC;YAAE,OAAO,IAAI,CAAC,SAAS,CAAC;QAC9B,IAAM,GAAG,GAAG,EAAE,CAAC;QACf,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAChE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACf;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,oDAAe,GAAf,UAAgB,CAAyC;QACrD,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;SACxC;QACD,OAAO,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,0DAAqB,GAArB,UAAsB,CAAwC;QAC1D,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,IAAM,GAAG,GAA8B,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAC3D,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAEhE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;YACrC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC;SAC/E;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,CAAC,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC;QAC9E,OAAO,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,OAAO,SAAA,EAAE,CAAC,CAAC;IAC5D,CAAC;IAED,mDAAc,GAAd,UAAe,QAA2C;QACtD,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE;YACnC,MAAM,IAAI,KAAK,CAAC,sCAA+B,QAAQ,CAAC,EAAE,0BAAuB,CAAC,CAAC;SACtF;QACD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/B,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;IAChD,CAAC;IAED,qDAAgB,GAAhB,UAAiB,QAA2C;QACxD,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;QACrC,kBAAkB,CAAC,IAAI,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAClD,CAAC;IAID,gDAAW,GAAX,UAAY,MAAsB,EAAE,WAAuD,EAAE,MAAY;QAAzG,iBAiBC;QAhBG,IAAM,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;QACnD,IAAI,CAAC,QAAQ;YAAE,OAAO;QAEtB,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAC3D,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,CAAC,gBAAgB;gBAAE,OAAO,CAAC,IAAI,CAAC,iDAAiD,CAAC,CAAC;YACvF,OAAO;SACV;QAED,IAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM;YACnC,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAc,CAAC;YAC1E,CAAC,CAAC,EAAE,CAAC,CAAC;QAEV,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,UAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAE,EAAE,cAAM,OAAA,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,KAAI,CAAC,MAAM,CAAiB,EAAvD,CAAuD,CAAC,CAAC;QACpH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IACrC,CAAC;IAKL,iCAAC;AAAD,CAAC,AA1FD,IA0FC"}

package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts

@@ -31,9 +31,9 @@ export declare namespace StructureRepresentationPresetProvider {
         ignoreHydrogens: PD.Base<boolean | undefined>;
         quality: PD.Base<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined>;
         theme: PD.Base<PD.Normalize<{
-            globalName: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
-            carbonColor: "chain-id" | "operator-name" | "element-symbol" | undefined;
-            symmetryColor: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+            globalName: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
+            carbonColor: "element-symbol" | "chain-id" | "operator-name" | undefined;
+            symmetryColor: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
             focus: PD.Normalize<{
                 name: any;
                 params: any;
@@ -44,14 +44,14 @@ export declare namespace StructureRepresentationPresetProvider {
     function reprBuilder(plugin: PluginContext, params: CommonParams, structure?: Structure): {
         update: import("../../../mol-state/state/builder").StateBuilder.Root;
         builder: import("./representation").StructureRepresentationBuilder;
-        color: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
-        symmetryColor: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+        color: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
+        symmetryColor: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
         typeParams: {
             quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
             ignoreHydrogens: boolean;
         };
         ballAndStickColor: Partial<PD.Values<{
-            carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
+            carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
                 palette: PD.NamedParams<PD.Normalize<{
                     maxCount: any;
                     hue: any;
@@ -74,7 +74,7 @@ export declare namespace StructureRepresentationPresetProvider {
                 }>, "generate"> | PD.NamedParams<PD.Normalize<{
                     list: any;
                 }>, "colors">;
-            }>, "operator-name"> | PD.NamedParams<PD.Normalize<unknown>, "element-symbol">>;
+            }>, "operator-name">>;
             saturation: PD.Numeric;
             lightness: PD.Numeric;
         }>>;

package/lib/mol-plugin-state/builder/structure/representation-preset.js

@@ -364,21 +364,22 @@ var atomicDetail = StructureRepresentationPresetProvider({
     },
     params: function () { return (__assign(__assign({}, CommonParams), { showCarbohydrateSymbol: PD.Boolean(false) })); },
     apply: function (ref, params, plugin) {
+        var _a, _b, _c, _d, _e, _f;
         return __awaiter(this, void 0, void 0, function () {
-            var structureCell, components, structure, highElementCount, lowResidueElementRatio, m, bondsGiven, atomicType, showCarbohydrateSymbol, _a, _b, _c, _d, update, builder, typeParams, color, ballAndStickColor, colorParams, representations;
-            var _e, _f;
-            return __generator(this, function (_g) {
-                switch (_g.label) {
+            var structureCell, components, structure, highElementCount, lowResidueElementRatio, m, bondsGiven, atomicType, showCarbohydrateSymbol, _g, _h, _j, _k, update, builder, typeParams, color, ballAndStickColor, colorParams, representations;
+            var _l, _m;
+            return __generator(this, function (_o) {
+                switch (_o.label) {
                     case 0:
                         structureCell = StateObjectRef.resolveAndCheck(plugin.state.data, ref);
                         if (!structureCell)
                             return [2 /*return*/, {}];
-                        _e = {};
+                        _l = {};
                         return [4 /*yield*/, presetStaticComponent(plugin, structureCell, 'all')];
                     case 1:
-                        components = (_e.all = _g.sent(),
-                            _e.branched = undefined,
-                            _e);
+                        components = (_l.all = _o.sent(),
+                            _l.branched = undefined,
+                            _l);
                         structure = structureCell.obj.data;
                         highElementCount = structure.elementCount > 100000;
                         lowResidueElementRatio = structure.atomicResidueCount &&
@@ -399,16 +400,16 @@ var atomicDetail = StructureRepresentationPresetProvider({
                         }
                         showCarbohydrateSymbol = params.showCarbohydrateSymbol && !highElementCount && !lowResidueElementRatio;
                         if (!showCarbohydrateSymbol) return [3 /*break*/, 3];
-                        _b = (_a = Object).assign;
-                        _c = [components];
-                        _f = {};
+                        _h = (_g = Object).assign;
+                        _j = [components];
+                        _m = {};
                         return [4 /*yield*/, presetStaticComponent(plugin, structureCell, 'branched', { label: 'Carbohydrate' })];
                     case 2:
-                        _b.apply(_a, _c.concat([(_f.branched = _g.sent(),
-                                _f)]));
-                        _g.label = 3;
+                        _h.apply(_g, _j.concat([(_m.branched = _o.sent(),
+                                _m)]));
+                        _o.label = 3;
                     case 3:
-                        _d = reprBuilder(plugin, params, structure), update = _d.update, builder = _d.builder, typeParams = _d.typeParams, color = _d.color, ballAndStickColor = _d.ballAndStickColor;
+                        _k = reprBuilder(plugin, params, structure), update = _k.update, builder = _k.builder, typeParams = _k.typeParams, color = _k.color, ballAndStickColor = _k.ballAndStickColor;
                         colorParams = lowResidueElementRatio && !bondsGiven
                             ? { carbonColor: { name: 'element-symbol', params: {} } }
                             : ballAndStickColor;
@@ -422,7 +423,10 @@ var atomicDetail = StructureRepresentationPresetProvider({
                         }
                         return [4 /*yield*/, update.commit({ revertOnError: true })];
                     case 4:
-                        _g.sent();
+                        _o.sent();
+                        return [4 /*yield*/, updateFocusRepr(plugin, structure, (_c = (_b = (_a = params.theme) === null || _a === void 0 ? void 0 : _a.focus) === null || _b === void 0 ? void 0 : _b.name) !== null && _c !== void 0 ? _c : color, (_f = (_e = (_d = params.theme) === null || _d === void 0 ? void 0 : _d.focus) === null || _e === void 0 ? void 0 : _e.params) !== null && _f !== void 0 ? _f : colorParams)];
+                    case 5:
+                        _o.sent();
                         return [2 /*return*/, { components: components, representations: representations }];
                 }
             });
@@ -433,7 +437,7 @@ export function presetStaticComponent(plugin, structure, type, params) {
     return plugin.builders.structure.tryCreateComponentStatic(structure, type, params);
 }
 export function presetSelectionComponent(plugin, structure, query, params) {
-    return plugin.builders.structure.tryCreateComponentFromSelection(structure, Q[query], "selection-" + query, params);
+    return plugin.builders.structure.tryCreateComponentFromSelection(structure, Q[query], "selection-".concat(query), params);
 }
 export var PresetStructureRepresentations = {
     empty: empty,

package/lib/mol-plugin-state/builder/structure/representation-preset.js.map

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package/lib/mol-plugin-state/builder/structure/representation.js

@@ -86,7 +86,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
     };
     StructureRepresentationBuilder.prototype.registerPreset = function (provider) {
         if (this.providerMap.has(provider.id)) {
-            throw new Error("Representation provider with id '" + provider.id + "' already registered.");
+            throw new Error("Representation provider with id '".concat(provider.id, "' already registered."));
         }
         this._providers.push(provider);
         this.providerMap.set(provider.id, provider);
@@ -114,7 +114,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
             : {});
         var defaults = this.plugin.config.get(PluginConfig.Structure.DefaultRepresentationPresetParams);
         prms = PD.merge(pd, defaults, prms);
-        var task = Task.create("" + provider.display.name, function () { return provider.apply(cell, prms, _this.plugin); });
+        var task = Task.create("".concat(provider.display.name), function () { return provider.apply(cell, prms, _this.plugin); });
         return this.plugin.runTask(task);
     };
     StructureRepresentationBuilder.prototype.addRepresentation = function (structure, props, options) {