npm - molstar - Versions diffs - 2.3.5 → 2.3.9 - Mend

molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1658) hide show

package/lib/mol-model/structure/export/mmcif.js CHANGED Viewed

@@ -103,7 +103,7 @@ function getCustomPropCategories(customProp, ctx, params) {
         if ((_a = params === null || params === void 0 ? void 0 : params.skipCategoryNames) === null || _a === void 0 ? void 0 : _a.has(cat.name))
             continue;
         if (cat.name.indexOf(prefix) !== 0)
-            throw new Error("Custom category '" + cat.name + "' name must start with prefix '" + prefix + ".'");
+            throw new Error("Custom category '".concat(cat.name, "' name must start with prefix '").concat(prefix, ".'"));
         ret.push([cat, propCtx]);
     }
     return ret;

package/lib/mol-model/structure/export/mmcif.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-model/structure/model/properties/atomic/bonds.js CHANGED Viewed

@@ -65,7 +65,7 @@ export function getIntraBondOrderFromTable(compId, atomId1, atomId2) {
         return 2;
     if (BaseNames.has(compId) && atomId1 === 'OP1' && atomId2 === 'P')
         return 2;
-    return IntraBondOrderTable.get(compId + "|" + atomId1 + "|" + atomId2) || 1;
+    return IntraBondOrderTable.get("".concat(compId, "|").concat(atomId1, "|").concat(atomId2)) || 1;
 }
 /**
  * Map of inter component bond orders assuming PDBx/mmCIF naming.
@@ -83,6 +83,6 @@ export function getInterBondOrderFromTable(compId1, atomId1, compId2, atomId2) {
         _a = [compId2, compId1], compId1 = _a[0], compId2 = _a[1];
         _b = [atomId2, atomId1], atomId1 = _b[0], atomId2 = _b[1];
     }
-    return InterBondOrderTable.get(compId1 + "|" + atomId1 + "|" + compId2 + "|" + atomId2) || 1;
+    return InterBondOrderTable.get("".concat(compId1, "|").concat(atomId1, "|").concat(compId2, "|").concat(atomId2)) || 1;
 }
 //# sourceMappingURL=bonds.js.map

package/lib/mol-model/structure/model/properties/atomic/bonds.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"bonds.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/model/properties/atomic/bonds.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD;;;GAGG;AACH,IAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IAChC,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IAEjB,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IAEd,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;CAClB,CAAC,CAAC;AAEH;;GAEG;AACH,MAAM,UAAU,0BAA0B,CAAC,MAAc,EAAE,OAAe,EAAE,OAAe;;IACvF,KAAqB,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,EAA/E,OAAO,QAAA,EAAE,OAAO,QAAA,CAAgE;IACjF,IAAI,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,OAAO,KAAK,GAAG,IAAI,OAAO,KAAK,GAAG;QAAE,OAAO,CAAC,CAAC;IAC/E,IAAI,SAAS,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,OAAO,KAAK,KAAK,IAAI,OAAO,KAAK,GAAG;QAAE,OAAO,CAAC,CAAC;IAC5E,OAAO,mBAAmB,CAAC,GAAG,~~CAAI~~,MAAM,~~SAAI~~,OAAO,~~SAAI~~,~~OAAS~~,CAAC,IAAI,CAAC,CAAC;AAC3E,CAAC;AAED;;;GAGG;AACH,IAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IAChC,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,iDAAiD;CAC1E,CAAC,CAAC;AAEH;;GAEG;AACH,MAAM,UAAU,0BAA0B,CAAC,OAAe,EAAE,OAAe,EAAE,OAAe,EAAE,OAAe;;IACzG,IAAI,OAAO,GAAG,OAAO,EAAE;QACnB,KAAqB,CAAC,OAAO,EAAE,OAAO,CAAC,EAAtC,OAAO,QAAA,EAAE,OAAO,QAAA,CAAuB;QACxC,KAAqB,CAAC,OAAO,EAAE,OAAO,CAAC,EAAtC,OAAO,QAAA,EAAE,OAAO,QAAA,CAAuB;KAC3C;IACD,OAAO,mBAAmB,CAAC,GAAG,~~CAAI~~,OAAO,~~SAAI~~,OAAO,~~SAAI~~,OAAO,~~SAAI~~,~~OAAS~~,CAAC,IAAI,CAAC,CAAC;AACvF,CAAC"}
1	+ {"version":3,"file":"bonds.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/model/properties/atomic/bonds.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAExD;;;GAGG;AACH,IAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IAChC,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,aAAa,EAAE,CAAC,CAAC;IAClB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IACjB,CAAC,YAAY,EAAE,CAAC,CAAC;IAEjB,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IACd,CAAC,SAAS,EAAE,CAAC,CAAC;IAEd,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;IACf,CAAC,UAAU,EAAE,CAAC,CAAC;CAClB,CAAC,CAAC;AAEH;;GAEG;AACH,MAAM,UAAU,0BAA0B,CAAC,MAAc,EAAE,OAAe,EAAE,OAAe;;IACvF,KAAqB,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,EAA/E,OAAO,QAAA,EAAE,OAAO,QAAA,CAAgE;IACjF,IAAI,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,OAAO,KAAK,GAAG,IAAI,OAAO,KAAK,GAAG;QAAE,OAAO,CAAC,CAAC;IAC/E,IAAI,SAAS,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,OAAO,KAAK,KAAK,IAAI,OAAO,KAAK,GAAG;QAAE,OAAO,CAAC,CAAC;IAC5E,OAAO,mBAAmB,CAAC,GAAG,CAAC,UAAG,MAAM,cAAI,OAAO,cAAI,OAAO,CAAE,CAAC,IAAI,CAAC,CAAC;AAC3E,CAAC;AAED;;;GAGG;AACH,IAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IAChC,CAAC,gBAAgB,EAAE,CAAC,CAAC,CAAC,iDAAiD;CAC1E,CAAC,CAAC;AAEH;;GAEG;AACH,MAAM,UAAU,0BAA0B,CAAC,OAAe,EAAE,OAAe,EAAE,OAAe,EAAE,OAAe;;IACzG,IAAI,OAAO,GAAG,OAAO,EAAE;QACnB,KAAqB,CAAC,OAAO,EAAE,OAAO,CAAC,EAAtC,OAAO,QAAA,EAAE,OAAO,QAAA,CAAuB;QACxC,KAAqB,CAAC,OAAO,EAAE,OAAO,CAAC,EAAtC,OAAO,QAAA,EAAE,OAAO,QAAA,CAAuB;KAC3C;IACD,OAAO,mBAAmB,CAAC,GAAG,CAAC,UAAG,OAAO,cAAI,OAAO,cAAI,OAAO,cAAI,OAAO,CAAE,CAAC,IAAI,CAAC,CAAC;AACvF,CAAC"}

package/lib/mol-model/structure/model/properties/symmetry.js CHANGED Viewed

@@ -52,11 +52,11 @@ var Symmetry;
         var gamma = radToDeg(anglesInRadians[2]).toFixed(2);
         var label = [];
         // name
-        label.push("Unit Cell <b>" + name + "</b> #" + num);
+        label.push("Unit Cell <b>".concat(name, "</b> #").concat(num));
         // sizes
-        label.push(a + "\u00D7" + b + "\u00D7" + c + " \u212B");
+        label.push("".concat(a, "\u00D7").concat(b, "\u00D7").concat(c, " \u212B"));
         // angles
-        label.push("\u03B1=" + alpha + "\u00B0 \u03B2=" + beta + "\u00B0 \u03B3=" + gamma + "\u00B0");
+        label.push("\u03B1=".concat(alpha, "\u00B0 \u03B2=").concat(beta, "\u00B0 \u03B3=").concat(gamma, "\u00B0"));
         return label.join(' | ');
     }
     Symmetry.getUnitcellLabel = getUnitcellLabel;

package/lib/mol-model/structure/model/properties/symmetry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"symmetry.js","sourceRoot":"","sources":["../../../../../src/mol-model/structure/model/properties/symmetry.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,SAAS,EAAE,MAAM,2BAA2B,CAAC;AAGtD,OAAO,EAAE,UAAU,EAAE,MAAM,+BAA+B,CAAC;AAE3D,OAAO,EAAE,aAAa,EAAE,MAAM,2DAA2D,CAAC;AAC1F,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAUrD;IAWI,kBAAY,EAAU,EAAE,OAAe,EAAU,iBAAuC;QAAvC,sBAAiB,GAAjB,iBAAiB,CAAsB;QACpF,IAAI,CAAC,EAAE,GAAG,EAAE,CAAC;QACb,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC;IAC3B,CAAC;IATD,sBAAI,oCAAc;aAAlB;YACI,IAAI,IAAI,CAAC,UAAU;gBAAE,OAAO,IAAI,CAAC,UAAU,CAAC;YAC5C,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,iBAAiB,EAAE,CAAC;YAC3C,OAAO,IAAI,CAAC,UAAU,CAAC;QAC3B,CAAC;;;OAAA;IAML,eAAC;AAAD,CAAC,AAfD,IAeC;;AAED,WAAiB,QAAQ;IACrB,SAAgB,MAAM,CAAC,EAAU,EAAE,OAAe,EAAE,iBAAuC;QACvF,OAAO,IAAI,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,iBAAiB,CAAC,CAAC;IACxD,CAAC;IAFe,eAAM,SAErB,CAAA;AACL,CAAC,EAJgB,QAAQ,KAAR,QAAQ,QAIxB;AAkBD,IAAU,QAAQ,CA2BjB;AA3BD,WAAU,QAAQ;IACD,gBAAO,GAAa,EAAE,UAAU,EAAE,EAAE,EAAE,UAAU,EAAE,UAAU,CAAC,MAAM,EAAE,yBAAyB,EAAE,KAAK,EAAE,CAAC;IAErH,SAAgB,YAAY,CAAC,KAAY,EAAE,EAAU;QACjD,IAAM,GAAG,GAAG,EAAE,CAAC,iBAAiB,EAAE,CAAC;QACnC,IAAM,QAAQ,GAAG,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QACnD,OAAO,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,CAAC,WAAW,EAAE,KAAK,GAAG,EAA1B,CAA0B,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAClG,CAAC;IAJe,qBAAY,eAI3B,CAAA;IAED,SAAgB,gBAAgB,CAAC,QAAkB;QACzC,IAAA,KAAsB,QAAQ,CAAC,UAAU,EAAvC,IAAI,UAAA,EAAE,IAAI,UAAA,EAAE,GAAG,SAAwB,CAAC;QACxC,IAAA,IAAI,GAAsB,IAAI,KAA1B,EAAE,eAAe,GAAK,IAAI,gBAAT,CAAU;QACvC,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,KAAK,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACtD,IAAM,IAAI,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACrD,IAAM,KAAK,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACtD,IAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,OAAO;QACP,KAAK,CAAC,IAAI,CAAC,~~kBAAgB~~,IAAI,~~cAAS~~,~~GAAK~~,CAAC,CAAC;QAC/C,QAAQ;QACR,KAAK,CAAC,IAAI,~~CAAI~~,CAAC,~~cAAS~~,CAAC,~~cAAS~~,CAAC,YAAS,CAAC,CAAC;QAC9C,SAAS;QACT,KAAK,CAAC,IAAI,CAAC,~~YAAU~~,KAAK,~~sBAAiB~~,IAAI,~~sBAAiB~~,KAAK,WAAQ,CAAC,CAAC;QAC/E,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC7B,CAAC;IAjBe,yBAAgB,mBAiB/B,CAAA;AACL,CAAC,EA3BS,QAAQ,KAAR,QAAQ,QA2BjB;AAED,OAAO,EAAE,QAAQ,EAAE,CAAC"}
1	+ {"version":3,"file":"symmetry.js","sourceRoot":"","sources":["../../../../../src/mol-model/structure/model/properties/symmetry.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,SAAS,EAAE,MAAM,2BAA2B,CAAC;AAGtD,OAAO,EAAE,UAAU,EAAE,MAAM,+BAA+B,CAAC;AAE3D,OAAO,EAAE,aAAa,EAAE,MAAM,2DAA2D,CAAC;AAC1F,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAUrD;IAWI,kBAAY,EAAU,EAAE,OAAe,EAAU,iBAAuC;QAAvC,sBAAiB,GAAjB,iBAAiB,CAAsB;QACpF,IAAI,CAAC,EAAE,GAAG,EAAE,CAAC;QACb,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC;IAC3B,CAAC;IATD,sBAAI,oCAAc;aAAlB;YACI,IAAI,IAAI,CAAC,UAAU;gBAAE,OAAO,IAAI,CAAC,UAAU,CAAC;YAC5C,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,iBAAiB,EAAE,CAAC;YAC3C,OAAO,IAAI,CAAC,UAAU,CAAC;QAC3B,CAAC;;;OAAA;IAML,eAAC;AAAD,CAAC,AAfD,IAeC;;AAED,WAAiB,QAAQ;IACrB,SAAgB,MAAM,CAAC,EAAU,EAAE,OAAe,EAAE,iBAAuC;QACvF,OAAO,IAAI,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,iBAAiB,CAAC,CAAC;IACxD,CAAC;IAFe,eAAM,SAErB,CAAA;AACL,CAAC,EAJgB,QAAQ,KAAR,QAAQ,QAIxB;AAkBD,IAAU,QAAQ,CA2BjB;AA3BD,WAAU,QAAQ;IACD,gBAAO,GAAa,EAAE,UAAU,EAAE,EAAE,EAAE,UAAU,EAAE,UAAU,CAAC,MAAM,EAAE,yBAAyB,EAAE,KAAK,EAAE,CAAC;IAErH,SAAgB,YAAY,CAAC,KAAY,EAAE,EAAU;QACjD,IAAM,GAAG,GAAG,EAAE,CAAC,iBAAiB,EAAE,CAAC;QACnC,IAAM,QAAQ,GAAG,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QACnD,OAAO,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,QAAQ,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,CAAC,WAAW,EAAE,KAAK,GAAG,EAA1B,CAA0B,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAClG,CAAC;IAJe,qBAAY,eAI3B,CAAA;IAED,SAAgB,gBAAgB,CAAC,QAAkB;QACzC,IAAA,KAAsB,QAAQ,CAAC,UAAU,EAAvC,IAAI,UAAA,EAAE,IAAI,UAAA,EAAE,GAAG,SAAwB,CAAC;QACxC,IAAA,IAAI,GAAsB,IAAI,KAA1B,EAAE,eAAe,GAAK,IAAI,gBAAT,CAAU;QACvC,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC7B,IAAM,KAAK,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACtD,IAAM,IAAI,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACrD,IAAM,KAAK,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACtD,IAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,OAAO;QACP,KAAK,CAAC,IAAI,CAAC,uBAAgB,IAAI,mBAAS,GAAG,CAAE,CAAC,CAAC;QAC/C,QAAQ;QACR,KAAK,CAAC,IAAI,CAAC,UAAG,CAAC,mBAAS,CAAC,mBAAS,CAAC,YAAS,CAAC,CAAC;QAC9C,SAAS;QACT,KAAK,CAAC,IAAI,CAAC,iBAAU,KAAK,2BAAiB,IAAI,2BAAiB,KAAK,WAAQ,CAAC,CAAC;QAC/E,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC7B,CAAC;IAjBe,yBAAgB,mBAiB/B,CAAA;AACL,CAAC,EA3BS,QAAQ,KAAR,QAAQ,QA2BjB;AAED,OAAO,EAAE,QAAQ,EAAE,CAAC"}

package/lib/mol-model/structure/model/properties/utils/atomic-index.js CHANGED Viewed

@@ -14,7 +14,7 @@ function getResidueId(seq_id, ins_code) {
         return cantorPairing(ins_code.charCodeAt(0), seq_id);
     if (ins_code.length === 2)
         return cantorPairing(ins_code.charCodeAt(0), cantorPairing(ins_code.charCodeAt(1), seq_id));
-    return seq_id + " " + ins_code;
+    return "".concat(seq_id, " ").concat(ins_code);
 }
 function updateMapMapIndex(map, key0, key1, index) {
     if (map.has(key0)) {
@@ -30,7 +30,7 @@ function updateMapMapIndex(map, key0, key1, index) {
     }
 }
 function missingEntity(k) {
-    throw new Error("Missing entity entry for entity id '" + k + "'.");
+    throw new Error("Missing entity entry for entity id '".concat(k, "'."));
 }
 function createMapping(entities, data, segments) {
     return {

package/lib/mol-model/structure/model/properties/utils/atomic-index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model/structure/model/properties/utils/coarse-keys.js CHANGED Viewed

@@ -49,7 +49,7 @@ function createLookUp(entities, chain, seq) {
     return { findChainKey: findChainKey, findSequenceKey: findSequenceKey };
 }
 function missingEntity(k) {
-    throw new Error("Missing entity entry for entity id '" + k + "'.");
+    throw new Error("Missing entity entry for entity id '".concat(k, "'."));
 }
 export function getCoarseKeys(data, entities) {
     var entity_id = data.entity_id, asym_id = data.asym_id, seq_id_begin = data.seq_id_begin, seq_id_end = data.seq_id_end, count = data.count, chainElementSegments = data.chainElementSegments;

package/lib/mol-model/structure/model/properties/utils/coarse-keys.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-model/structure/model/properties/utils/residue-set.js CHANGED Viewed

@@ -58,7 +58,7 @@ var ResidueSet = /** @class */ (function () {
     ResidueSet.getLabel = function (entry, checkOperator) {
         var _a;
         if (checkOperator === void 0) { checkOperator = false; }
-        return entry.label_asym_id + " " + entry.label_comp_id + " " + entry.label_seq_id + ":" + entry.ins_code + ":" + entry.label_alt_id + (checkOperator ? ' ' + ((_a = entry.operator_name) !== null && _a !== void 0 ? _a : '1_555') : '');
+        return "".concat(entry.label_asym_id, " ").concat(entry.label_comp_id, " ").concat(entry.label_seq_id, ":").concat(entry.ins_code, ":").concat(entry.label_alt_id).concat(checkOperator ? ' ' + ((_a = entry.operator_name) !== null && _a !== void 0 ? _a : '1_555') : '');
     };
     ResidueSet.getEntryFromLocation = function (loc) {
         var _a;

package/lib/mol-model/structure/model/properties/utils/residue-set.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-model/structure/query/context.js CHANGED Viewed

@@ -69,7 +69,7 @@ var QueryContext = /** @class */ (function () {
         if (this.timeoutMs === 0)
             return;
         if (now() - this.timeCreated > this.timeoutMs) {
-            throw new Error("The query took too long to execute (> " + this.timeoutMs / 1000 + "s).");
+            throw new Error("The query took too long to execute (> ".concat(this.timeoutMs / 1000, "s)."));
         }
     };
     QueryContext.prototype.tryGetCurrentSelection = function () {

package/lib/mol-model/structure/query/context.js.map CHANGED Viewed

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package/lib/mol-model/structure/query/utils/structure-distance.d.ts CHANGED Viewed

@@ -10,11 +10,60 @@ export declare function checkStructureMinMaxDistance(ctx: QueryContext, a: Struc
 export declare function checkStructureMaxRadiusDistance(ctx: QueryContext, a: Structure, b: Structure, maxDist: number, elementRadius: QueryFn<number>): boolean | 0;
 declare namespace MinMaxDist {
     const enum Result {
-        BelowMin = 0,
-        WithinMax = 1,
-        Miss = 2
+        BelowMin,
+        WithinMax,
+        Miss
+    }
+    const distVec = Vec3.zero();
+    function inUnit(ctx: QueryContext, unit: Unit, p: Vec3, eRadius: number, minDist: number, maxDist: number, elementRadius: QueryFn<number>) {
+        const { elements, conformation: { position } } = unit, dV = distVec;
+        ctx.element.unit = unit;
+        let withinRange = false;
+        for (let i = 0, _i = elements.length; i < _i; i++) {
+            const e = elements[i];
+            ctx.element.element = e;
+            const d = Math.max(0, Vec3.distance(p, position(e, dV)) - eRadius - elementRadius(ctx));
+            if (d < minDist)
+                return Result.BelowMin;
+            if (d < maxDist)
+                withinRange = true;
+        }
+        return withinRange ? Result.WithinMax : Result.Miss;
+    }
+    function toPoint(ctx: QueryContext, s: Structure, point: Vec3, radius: number, minDist: number, maxDist: number, elementRadius: QueryFn<number>) {
+        const { units } = s;
+        let withinRange = false;
+        for (let i = 0, _i = units.length; i < _i; i++) {
+            const iu = inUnit(ctx, units[i], point, radius, minDist, maxDist, elementRadius);
+            if (iu === Result.BelowMin)
+                return Result.BelowMin;
+            if (iu === Result.WithinMax)
+                withinRange = true;
+        }
+        return withinRange ? Result.WithinMax : Result.Miss;
+    }
+    const distPivot = Vec3.zero();
+    function check(ctx: QueryContext, a: Structure, b: Structure, minDist: number, maxDist: number, elementRadius: QueryFn<number>) {
+        if (a.elementCount === 0 || b.elementCount === 0)
+            return 0;
+        const { units } = a;
+        let withinRange = false;
+        ctx.element.structure = a;
+        for (let i = 0, _i = units.length; i < _i; i++) {
+            const unit = units[i];
+            const { elements, conformation: { position } } = unit;
+            ctx.element.unit = unit;
+            for (let i = 0, _i = elements.length; i < _i; i++) {
+                const e = elements[i];
+                ctx.element.element = e;
+                const tp = toPoint(ctx, b, position(e, distPivot), elementRadius(ctx), minDist, maxDist, elementRadius);
+                if (tp === Result.BelowMin)
+                    return Result.BelowMin;
+                if (tp === Result.WithinMax)
+                    withinRange = true;
+            }
+        }
+        return withinRange;
     }
-    function toPoint(ctx: QueryContext, s: Structure, point: Vec3, radius: number, minDist: number, maxDist: number, elementRadius: QueryFn<number>): Result;
-    function check(ctx: QueryContext, a: Structure, b: Structure, minDist: number, maxDist: number, elementRadius: QueryFn<number>): boolean | 0 | Result.BelowMin;
 }
 export {};

package/lib/mol-model/structure/structure/carbohydrates/compute.js CHANGED Viewed

@@ -122,7 +122,7 @@ export function computeCarbohydrates(structure) {
     var partialElements = [];
     var elementsWithRingMap = new Map();
     function ringElementKey(residueIndex, unitId, altId) {
-        return residueIndex + "|" + unitId + "|" + altId;
+        return "".concat(residueIndex, "|").concat(unitId, "|").concat(altId);
     }
     function addRingElement(key, elementIndex) {
         if (elementsWithRingMap.has(key))

package/lib/mol-model/structure/structure/carbohydrates/compute.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-model/structure/structure/element/loci.d.ts CHANGED Viewed

@@ -65,5 +65,6 @@ export declare namespace Loci {
     function getBoundary(loci: Loci, transform?: Mat4): Boundary;
     function toPositionsArray(loci: Loci, positions: NumberArray, offset?: number): NumberArray;
     function getPrincipalAxes(loci: Loci): PrincipalAxes;
+    function getPrincipalAxesMany(locis: Loci[]): PrincipalAxes;
     function toExpression(loci: Loci): Expression;
 }

package/lib/mol-model/structure/structure/element/loci.js CHANGED Viewed

@@ -411,7 +411,7 @@ export function Loci(structure, elements) {
     }
     Loci.extendToWholeChains = extendToWholeChains;
     function entityModelKey(location) {
-        return location.unit.model.id + "|" + StructureProperties.entity.id(location);
+        return "".concat(location.unit.model.id, "|").concat(StructureProperties.entity.id(location));
     }
     function extendToWholeEntities(loci) {
         var elements = [];
@@ -571,6 +571,20 @@ export function Loci(structure, elements) {
         return PrincipalAxes.ofPositions(positions);
     }
     Loci.getPrincipalAxes = getPrincipalAxes;
+    function getPrincipalAxesMany(locis) {
+        var elementCount = 0;
+        locis.forEach(function (l) {
+            elementCount += size(l);
+        });
+        var positions = new Float32Array(3 * elementCount);
+        var offset = 0;
+        locis.forEach(function (l) {
+            toPositionsArray(l, positions, offset);
+            offset += size(l) * 3;
+        });
+        return PrincipalAxes.ofPositions(positions);
+    }
+    Loci.getPrincipalAxesMany = getPrincipalAxesMany;
     function sourceIndex(unit, element) {
         return Unit.isAtomic(unit)
             ? unit.model.atomicHierarchy.atomSourceIndex.value(element)
@@ -613,7 +627,7 @@ export function Loci(structure, elements) {
         for (var i = 0, il = opData.length; i < il; ++i) {
             var d = opData[i];
             var hash = hash2(hashFnv32a(d.atom.ranges), hashFnv32a(d.atom.set));
-            var key = hash + "|" + (d.entity ? (d.entity.modelLabel + d.entity.modelIndex) : '');
+            var key = "".concat(hash, "|").concat(d.entity ? (d.entity.modelLabel + d.entity.modelIndex) : '');
             if (opGroups.has(key)) {
                 (_a = opGroups.get(key).chain.opName).push.apply(_a, d.chain.opName);
             }