molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1658) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +176 -176
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +94 -94
  5. package/build/viewer/molstar.css +1 -2
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/index.js.map +1 -1
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.d.ts +290 -1
  12. package/lib/apps/viewer/index.html +94 -94
  13. package/lib/apps/viewer/index.js +91 -5
  14. package/lib/apps/viewer/index.js.map +1 -1
  15. package/lib/cli/chem-comp-dict/create-ions.js +1 -1
  16. package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
  17. package/lib/cli/chem-comp-dict/create-table.js +3 -3
  18. package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
  19. package/lib/cli/chem-comp-dict/util.js +2 -2
  20. package/lib/cli/chem-comp-dict/util.js.map +1 -1
  21. package/lib/cli/cif2bcif/converter.js +2 -2
  22. package/lib/cli/cif2bcif/converter.js.map +1 -1
  23. package/lib/cli/cifschema/index.js +12 -12
  24. package/lib/cli/cifschema/index.js.map +1 -1
  25. package/lib/cli/cifschema/util/cif-dic.js +19 -19
  26. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  27. package/lib/cli/cifschema/util/generate.js +21 -21
  28. package/lib/cli/cifschema/util/generate.js.map +1 -1
  29. package/lib/cli/cifschema/util/schema.js +1 -1
  30. package/lib/cli/cifschema/util/schema.js.map +1 -1
  31. package/lib/cli/lipid-params/index.js +3 -3
  32. package/lib/cli/lipid-params/index.js.map +1 -1
  33. package/lib/cli/state-docs/index.js +4 -4
  34. package/lib/cli/state-docs/index.js.map +1 -1
  35. package/lib/cli/state-docs/pd-to-md.js +10 -10
  36. package/lib/cli/state-docs/pd-to-md.js.map +1 -1
  37. package/lib/cli/structure-info/model.js +18 -18
  38. package/lib/cli/structure-info/model.js.map +1 -1
  39. package/lib/cli/structure-info/volume.js +1 -1
  40. package/lib/cli/structure-info/volume.js.map +1 -1
  41. package/lib/commonjs/apps/docking-viewer/index.js +1 -1
  42. package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
  43. package/lib/commonjs/apps/viewer/index.d.ts +289 -0
  44. package/lib/commonjs/apps/viewer/index.js +91 -5
  45. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  46. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
  47. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
  48. package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
  49. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
  50. package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
  51. package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
  52. package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
  53. package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
  54. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  55. package/lib/commonjs/cli/cifschema/index.js +12 -12
  56. package/lib/commonjs/cli/cifschema/index.js.map +1 -1
  57. package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
  58. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  59. package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
  60. package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
  61. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  62. package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
  63. package/lib/commonjs/cli/lipid-params/index.js +3 -3
  64. package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
  65. package/lib/commonjs/cli/state-docs/index.js +4 -4
  66. package/lib/commonjs/cli/state-docs/index.js.map +1 -1
  67. package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
  68. package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
  69. package/lib/commonjs/cli/structure-info/model.js +18 -18
  70. package/lib/commonjs/cli/structure-info/model.js.map +1 -1
  71. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  72. package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
  73. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  74. package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
  75. package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
  76. package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
  77. package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
  78. package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
  79. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
  80. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
  81. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
  82. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
  83. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  84. package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
  85. package/lib/commonjs/examples/task.js +6 -6
  86. package/lib/commonjs/examples/task.js.map +1 -1
  87. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
  88. package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
  89. package/lib/commonjs/extensions/anvil/representation.js +1 -1
  90. package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
  91. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  92. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  93. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  94. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  95. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  96. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  97. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  98. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  100. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  101. package/lib/commonjs/extensions/cellpack/model.js +203 -65
  102. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  103. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  104. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  105. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  106. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  107. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  108. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  109. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  110. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  111. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  112. package/lib/commonjs/extensions/cellpack/state.js +234 -27
  113. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  114. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  115. package/lib/commonjs/extensions/cellpack/util.js +34 -6
  116. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
  119. package/lib/commonjs/extensions/g3d/data.js +2 -2
  120. package/lib/commonjs/extensions/g3d/data.js.map +1 -1
  121. package/lib/commonjs/extensions/g3d/model.js +2 -2
  122. package/lib/commonjs/extensions/g3d/model.js.map +1 -1
  123. package/lib/commonjs/extensions/geo-export/controls.js +2 -2
  124. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  125. package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
  126. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  127. package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
  128. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  129. package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
  130. package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
  131. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
  132. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  133. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  134. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  135. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  136. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
  137. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  138. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
  139. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  140. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
  141. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
  142. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  143. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
  144. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
  145. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
  146. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
  147. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  148. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
  149. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
  150. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
  151. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
  152. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
  153. package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
  154. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  155. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  156. package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
  157. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  158. package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
  159. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  160. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  161. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
  162. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
  163. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  164. package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
  165. package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
  166. package/lib/commonjs/mol-canvas3d/util.js +1 -1
  167. package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
  168. package/lib/commonjs/mol-data/db/table.js +1 -1
  169. package/lib/commonjs/mol-data/db/table.js.map +1 -1
  170. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
  171. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
  172. package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
  173. package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
  174. package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
  175. package/lib/commonjs/mol-data/int/tuple.js +1 -1
  176. package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
  177. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
  178. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
  179. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  180. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  181. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  182. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  183. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  184. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  185. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  186. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  187. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  188. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  189. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  190. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  191. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
  192. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  193. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  194. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  195. package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
  196. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  197. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  198. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  199. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  200. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  201. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  202. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  203. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  204. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  205. package/lib/commonjs/mol-gl/_spec/gl.shim.js +5 -5
  206. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  207. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  208. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  209. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  210. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  211. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  212. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  213. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  214. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  215. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  216. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  217. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  218. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  219. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  220. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +7 -45
  221. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  222. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  223. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  224. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  225. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  226. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  227. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  228. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  229. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  230. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  231. package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
  232. package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
  233. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
  234. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
  235. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  236. package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
  237. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  238. package/lib/commonjs/mol-gl/scene.js +1 -1
  239. package/lib/commonjs/mol-gl/scene.js.map +1 -1
  240. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  241. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  242. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  243. package/lib/commonjs/mol-gl/shader-code.js +8 -8
  244. package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
  245. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
  246. package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
  247. package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
  248. package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
  249. package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
  250. package/lib/commonjs/mol-gl/webgl/context.js +6 -4
  251. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  252. package/lib/commonjs/mol-gl/webgl/extensions.js +5 -1
  253. package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
  254. package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
  255. package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
  256. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  257. package/lib/commonjs/mol-gl/webgl/program.js +14 -12
  258. package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
  259. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
  260. package/lib/commonjs/mol-gl/webgl/render-item.js +2 -2
  261. package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
  262. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  263. package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
  264. package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
  265. package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
  266. package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
  267. package/lib/commonjs/mol-gl/webgl/state.js +25 -1
  268. package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
  269. package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
  270. package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
  271. package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
  272. package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
  273. package/lib/commonjs/mol-io/common/file-handle.js +1 -1
  274. package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
  275. package/lib/commonjs/mol-io/common/typed-array.js +1 -1
  276. package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
  277. package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
  278. package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
  279. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
  280. package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
  281. package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
  282. package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
  283. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  284. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
  285. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
  286. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +12 -12
  287. package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
  288. package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
  289. package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
  290. package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
  291. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
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@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const PolymerIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
+ list: {
12
+ kind: "interpolate" | "set";
13
+ colors: import("../../mol-util/color/color").ColorListEntry[];
14
+ };
15
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
11
16
  maxCount: number;
12
17
  hue: [number, number];
13
18
  chroma: [number, number];
14
19
  luminance: [number, number];
15
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  clusteringStepCount: number;
16
21
  minSampleCount: number;
17
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
- list: {
19
- kind: "set" | "interpolate";
20
- colors: import("../../mol-util/color/color").ColorListEntry[];
21
- };
22
- }>, "colors">>;
22
+ }>, "generate">>;
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23
  };
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24
  export declare type PolymerIndexColorThemeParams = typeof PolymerIndexColorThemeParams;
25
25
  export declare function getPolymerIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
+ list: {
28
+ kind: "interpolate" | "set";
29
+ colors: import("../../mol-util/color/color").ColorListEntry[];
30
+ };
31
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
27
32
  maxCount: number;
28
33
  hue: [number, number];
29
34
  chroma: [number, number];
30
35
  luminance: [number, number];
31
36
  clusteringStepCount: number;
32
37
  minSampleCount: number;
33
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
- list: {
35
- kind: "set" | "interpolate";
36
- colors: import("../../mol-util/color/color").ColorListEntry[];
37
- };
38
- }>, "colors">>;
38
+ }>, "generate">>;
39
39
  };
40
40
  export declare type PolymerIndexColorThemeProps = PD.Values<typeof PolymerIndexColorThemeParams>;
41
41
  export declare function PolymerIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIndexColorThemeParams>): ColorTheme<PolymerIndexColorThemeParams>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const UnitIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
+ list: {
12
+ kind: "interpolate" | "set";
13
+ colors: import("../../mol-util/color/color").ColorListEntry[];
14
+ };
15
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
11
16
  maxCount: number;
12
17
  hue: [number, number];
13
18
  chroma: [number, number];
14
19
  luminance: [number, number];
15
20
  clusteringStepCount: number;
16
21
  minSampleCount: number;
17
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
- list: {
19
- kind: "set" | "interpolate";
20
- colors: import("../../mol-util/color/color").ColorListEntry[];
21
- };
22
- }>, "colors">>;
22
+ }>, "generate">>;
23
23
  };
24
24
  export declare type UnitIndexColorThemeParams = typeof UnitIndexColorThemeParams;
25
25
  export declare function getUnitIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
+ list: {
28
+ kind: "interpolate" | "set";
29
+ colors: import("../../mol-util/color/color").ColorListEntry[];
30
+ };
31
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
27
32
  maxCount: number;
28
33
  hue: [number, number];
29
34
  chroma: [number, number];
30
35
  luminance: [number, number];
31
36
  clusteringStepCount: number;
32
37
  minSampleCount: number;
33
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
- list: {
35
- kind: "set" | "interpolate";
36
- colors: import("../../mol-util/color/color").ColorListEntry[];
37
- };
38
- }>, "colors">>;
38
+ }>, "generate">>;
39
39
  };
40
40
  export declare function UnitIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<UnitIndexColorThemeParams>): ColorTheme<UnitIndexColorThemeParams>;
41
41
  export declare const UnitIndexColorThemeProvider: ColorTheme.Provider<UnitIndexColorThemeParams, 'unit-index'>;
@@ -56,108 +56,108 @@ declare namespace ColorTheme {
56
56
  export const BuiltIn: {
57
57
  'atom-id': Provider<{
58
58
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
59
+ list: {
60
+ kind: "interpolate" | "set";
61
+ colors: import("../mol-util/color/color").ColorListEntry[];
62
+ };
63
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
59
64
  maxCount: number;
60
65
  hue: [number, number];
61
66
  chroma: [number, number];
62
67
  luminance: [number, number];
63
68
  clusteringStepCount: number;
64
69
  minSampleCount: number;
65
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
66
- list: {
67
- kind: "set" | "interpolate";
68
- colors: import("../mol-util/color/color").ColorListEntry[];
69
- };
70
- }>, "colors">>;
70
+ }>, "generate">>;
71
71
  }, "atom-id">;
72
72
  'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol">;
73
73
  'chain-id': Provider<{
74
74
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
75
+ list: {
76
+ kind: "interpolate" | "set";
77
+ colors: import("../mol-util/color/color").ColorListEntry[];
78
+ };
79
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
75
80
  maxCount: number;
76
81
  hue: [number, number];
77
82
  chroma: [number, number];
78
83
  luminance: [number, number];
79
84
  clusteringStepCount: number;
80
85
  minSampleCount: number;
81
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
82
- list: {
83
- kind: "set" | "interpolate";
84
- colors: import("../mol-util/color/color").ColorListEntry[];
85
- };
86
- }>, "colors">>;
86
+ }>, "generate">>;
87
87
  asymId: PD.Select<"label" | "auth">;
88
88
  }, "chain-id">;
89
89
  'element-index': Provider<{
90
90
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
91
+ list: {
92
+ kind: "interpolate" | "set";
93
+ colors: import("../mol-util/color/color").ColorListEntry[];
94
+ };
95
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
91
96
  maxCount: number;
92
97
  hue: [number, number];
93
98
  chroma: [number, number];
94
99
  luminance: [number, number];
95
100
  clusteringStepCount: number;
96
101
  minSampleCount: number;
97
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
98
- list: {
99
- kind: "set" | "interpolate";
100
- colors: import("../mol-util/color/color").ColorListEntry[];
101
- };
102
- }>, "colors">>;
102
+ }>, "generate">>;
103
103
  }, "element-index">;
104
104
  'element-symbol': Provider<{
105
105
  carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
106
106
  palette: PD.NamedParams<PD.Normalize<{
107
+ list: any;
108
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
107
109
  maxCount: any;
108
110
  hue: any;
109
111
  chroma: any;
110
112
  luminance: any;
111
113
  clusteringStepCount: any;
112
114
  minSampleCount: any;
113
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
114
- list: any;
115
- }>, "colors">;
115
+ }>, "generate">;
116
116
  asymId: "label" | "auth";
117
117
  }>, "chain-id"> | PD.NamedParams<PD.Normalize<{
118
118
  palette: PD.NamedParams<PD.Normalize<{
119
+ list: any;
120
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
119
121
  maxCount: any;
120
122
  hue: any;
121
123
  chroma: any;
122
124
  luminance: any;
123
125
  clusteringStepCount: any;
124
126
  minSampleCount: any;
125
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
126
- list: any;
127
- }>, "colors">;
127
+ }>, "generate">;
128
128
  }>, "operator-name"> | PD.NamedParams<PD.Normalize<unknown>, "element-symbol">>;
129
129
  saturation: PD.Numeric;
130
130
  lightness: PD.Numeric;
131
131
  }, "element-symbol">;
132
132
  'entity-id': Provider<{
133
133
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
134
+ list: {
135
+ kind: "interpolate" | "set";
136
+ colors: import("../mol-util/color/color").ColorListEntry[];
137
+ };
138
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
134
139
  maxCount: number;
135
140
  hue: [number, number];
136
141
  chroma: [number, number];
137
142
  luminance: [number, number];
138
143
  clusteringStepCount: number;
139
144
  minSampleCount: number;
140
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
141
- list: {
142
- kind: "set" | "interpolate";
143
- colors: import("../mol-util/color/color").ColorListEntry[];
144
- };
145
- }>, "colors">>;
145
+ }>, "generate">>;
146
146
  }, "entity-id">;
147
147
  'entity-source': Provider<{
148
148
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
149
+ list: {
150
+ kind: "interpolate" | "set";
151
+ colors: import("../mol-util/color/color").ColorListEntry[];
152
+ };
153
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
149
154
  maxCount: number;
150
155
  hue: [number, number];
151
156
  chroma: [number, number];
152
157
  luminance: [number, number];
153
158
  clusteringStepCount: number;
154
159
  minSampleCount: number;
155
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
156
- list: {
157
- kind: "set" | "interpolate";
158
- colors: import("../mol-util/color/color").ColorListEntry[];
159
- };
160
- }>, "colors">>;
160
+ }>, "generate">>;
161
161
  }, "entity-source">;
162
162
  hydrophobicity: Provider<{
163
163
  list: PD.ColorList;
@@ -165,34 +165,34 @@ declare namespace ColorTheme {
165
165
  }, "hydrophobicity">;
166
166
  illustrative: Provider<{
167
167
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
168
+ list: {
169
+ kind: "interpolate" | "set";
170
+ colors: import("../mol-util/color/color").ColorListEntry[];
171
+ };
172
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
168
173
  maxCount: number;
169
174
  hue: [number, number];
170
175
  chroma: [number, number];
171
176
  luminance: [number, number];
172
177
  clusteringStepCount: number;
173
178
  minSampleCount: number;
174
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
175
- list: {
176
- kind: "set" | "interpolate";
177
- colors: import("../mol-util/color/color").ColorListEntry[];
178
- };
179
- }>, "colors">>;
179
+ }>, "generate">>;
180
180
  asymId: PD.Select<"label" | "auth">;
181
181
  }, "illustrative">;
182
182
  'model-index': Provider<{
183
183
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
184
+ list: {
185
+ kind: "interpolate" | "set";
186
+ colors: import("../mol-util/color/color").ColorListEntry[];
187
+ };
188
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
184
189
  maxCount: number;
185
190
  hue: [number, number];
186
191
  chroma: [number, number];
187
192
  luminance: [number, number];
188
193
  clusteringStepCount: number;
189
194
  minSampleCount: number;
190
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
191
- list: {
192
- kind: "set" | "interpolate";
193
- colors: import("../mol-util/color/color").ColorListEntry[];
194
- };
195
- }>, "colors">>;
195
+ }>, "generate">>;
196
196
  }, "model-index">;
197
197
  'molecule-type': Provider<{
198
198
  saturation: PD.Numeric;
@@ -204,33 +204,33 @@ declare namespace ColorTheme {
204
204
  }, "occupancy">;
205
205
  'operator-hkl': Provider<{
206
206
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
207
+ list: {
208
+ kind: "interpolate" | "set";
209
+ colors: import("../mol-util/color/color").ColorListEntry[];
210
+ };
211
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
207
212
  maxCount: number;
208
213
  hue: [number, number];
209
214
  chroma: [number, number];
210
215
  luminance: [number, number];
211
216
  clusteringStepCount: number;
212
217
  minSampleCount: number;
213
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
214
- list: {
215
- kind: "set" | "interpolate";
216
- colors: import("../mol-util/color/color").ColorListEntry[];
217
- };
218
- }>, "colors">>;
218
+ }>, "generate">>;
219
219
  }, "operator-hkl">;
220
220
  'operator-name': Provider<{
221
221
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
222
+ list: {
223
+ kind: "interpolate" | "set";
224
+ colors: import("../mol-util/color/color").ColorListEntry[];
225
+ };
226
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
222
227
  maxCount: number;
223
228
  hue: [number, number];
224
229
  chroma: [number, number];
225
230
  luminance: [number, number];
226
231
  clusteringStepCount: number;
227
232
  minSampleCount: number;
228
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
229
- list: {
230
- kind: "set" | "interpolate";
231
- colors: import("../mol-util/color/color").ColorListEntry[];
232
- };
233
- }>, "colors">>;
233
+ }>, "generate">>;
234
234
  }, "operator-name">;
235
235
  'partial-charge': Provider<{
236
236
  domain: PD.Interval;
@@ -238,33 +238,33 @@ declare namespace ColorTheme {
238
238
  }, "partial-charge">;
239
239
  'polymer-id': Provider<{
240
240
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
241
+ list: {
242
+ kind: "interpolate" | "set";
243
+ colors: import("../mol-util/color/color").ColorListEntry[];
244
+ };
245
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
241
246
  maxCount: number;
242
247
  hue: [number, number];
243
248
  chroma: [number, number];
244
249
  luminance: [number, number];
245
250
  clusteringStepCount: number;
246
251
  minSampleCount: number;
247
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
248
- list: {
249
- kind: "set" | "interpolate";
250
- colors: import("../mol-util/color/color").ColorListEntry[];
251
- };
252
- }>, "colors">>;
252
+ }>, "generate">>;
253
253
  }, "polymer-id">;
254
254
  'polymer-index': Provider<{
255
255
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
256
+ list: {
257
+ kind: "interpolate" | "set";
258
+ colors: import("../mol-util/color/color").ColorListEntry[];
259
+ };
260
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
256
261
  maxCount: number;
257
262
  hue: [number, number];
258
263
  chroma: [number, number];
259
264
  luminance: [number, number];
260
265
  clusteringStepCount: number;
261
266
  minSampleCount: number;
262
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
263
- list: {
264
- kind: "set" | "interpolate";
265
- colors: import("../mol-util/color/color").ColorListEntry[];
266
- };
267
- }>, "colors">>;
267
+ }>, "generate">>;
268
268
  }, "polymer-index">;
269
269
  'residue-name': Provider<{
270
270
  saturation: PD.Numeric;
@@ -284,18 +284,18 @@ declare namespace ColorTheme {
284
284
  }, "uncertainty">;
285
285
  'unit-index': Provider<{
286
286
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
287
+ list: {
288
+ kind: "interpolate" | "set";
289
+ colors: import("../mol-util/color/color").ColorListEntry[];
290
+ };
291
+ }>, "colors"> | PD.NamedParams<PD.Normalize<{
287
292
  maxCount: number;
288
293
  hue: [number, number];
289
294
  chroma: [number, number];
290
295
  luminance: [number, number];
291
296
  clusteringStepCount: number;
292
297
  minSampleCount: number;
293
- }>, "generate"> | PD.NamedParams<PD.Normalize<{
294
- list: {
295
- kind: "set" | "interpolate";
296
- colors: import("../mol-util/color/color").ColorListEntry[];
297
- };
298
- }>, "colors">>;
298
+ }>, "generate">>;
299
299
  }, "unit-index">;
300
300
  uniform: Provider<{
301
301
  value: PD.Color;
@@ -18,6 +18,7 @@ export declare const DefaultLabelOptions: {
18
18
  export declare type LabelOptions = typeof DefaultLabelOptions;
19
19
  export declare function lociLabel(loci: Loci, options?: Partial<LabelOptions>): string;
20
20
  export declare function structureElementStatsLabel(stats: StructureElement.Stats, options?: Partial<LabelOptions>): string;
21
+ export declare function structureElementLociLabelMany(locis: StructureElement.Loci[], options?: Partial<LabelOptions>): string;
21
22
  export declare function bondLabel(bond: Bond.Location, options?: Partial<LabelOptions>): string;
22
23
  export declare function bundleLabel(bundle: Loci.Bundle<any>, options?: Partial<LabelOptions>): string;
23
24
  export declare function _bundleLabel(bundle: Loci.Bundle<any>, options: LabelOptions): string;
@@ -6,7 +6,7 @@
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.dihedralLabel = exports.angleLabel = exports.distanceLabel = exports.elementLabel = exports._bundleLabel = exports.bundleLabel = exports.bondLabel = exports.structureElementStatsLabel = exports.lociLabel = exports.DefaultLabelOptions = void 0;
9
+ exports.dihedralLabel = exports.angleLabel = exports.distanceLabel = exports.elementLabel = exports._bundleLabel = exports.bundleLabel = exports.bondLabel = exports.structureElementLociLabelMany = exports.structureElementStatsLabel = exports.lociLabel = exports.DefaultLabelOptions = void 0;
10
10
  var tslib_1 = require("tslib");
11
11
  var structure_1 = require("../mol-model/structure");
12
12
  var loci_1 = require("../mol-model/loci");
@@ -48,8 +48,8 @@ function lociLabel(loci, options) {
48
48
  return loci.volume.label || 'Volume';
49
49
  case 'isosurface-loci':
50
50
  return [
51
- "" + (loci.volume.label || 'Volume'),
52
- "Isosurface at " + volume_1.Volume.IsoValue.toString(loci.isoValue)
51
+ "".concat(loci.volume.label || 'Volume'),
52
+ "Isosurface at ".concat(volume_1.Volume.IsoValue.toString(loci.isoValue))
53
53
  ].join(' | ');
54
54
  case 'cell-loci':
55
55
  var size = int_1.OrderedSet.size(loci.indices);
@@ -57,21 +57,21 @@ function lociLabel(loci, options) {
57
57
  var absVal = volume_1.Volume.IsoValue.absolute(loci.volume.grid.cells.data[start]);
58
58
  var relVal = volume_1.Volume.IsoValue.toRelative(absVal, loci.volume.grid.stats);
59
59
  var label = [
60
- "" + (loci.volume.label || 'Volume'),
61
- "" + (size === 1 ? "Cell #" + start : size + " Cells")
60
+ "".concat(loci.volume.label || 'Volume'),
61
+ "".concat(size === 1 ? "Cell #".concat(start) : "".concat(size, " Cells"))
62
62
  ];
63
63
  if (size === 1) {
64
- label.push(volume_1.Volume.IsoValue.toString(absVal) + " (" + volume_1.Volume.IsoValue.toString(relVal) + ")");
64
+ label.push("".concat(volume_1.Volume.IsoValue.toString(absVal), " (").concat(volume_1.Volume.IsoValue.toString(relVal), ")"));
65
65
  }
66
66
  return label.join(' | ');
67
67
  }
68
68
  }
69
69
  exports.lociLabel = lociLabel;
70
70
  function countLabel(count, label) {
71
- return count === 1 ? "1 " + label : count + " " + label + "s";
71
+ return count === 1 ? "1 ".concat(label) : "".concat(count, " ").concat(label, "s");
72
72
  }
73
73
  function otherLabel(count, location, granularity, hidePrefix, reverse, condensed) {
74
- return elementLabel(location, { granularity: granularity, hidePrefix: hidePrefix, reverse: reverse, condensed: condensed }) + " <small>[+ " + countLabel(count - 1, "other " + (0, string_1.capitalize)(granularity)) + "]</small>";
74
+ return "".concat(elementLabel(location, { granularity: granularity, hidePrefix: hidePrefix, reverse: reverse, condensed: condensed }), " <small>[+ ").concat(countLabel(count - 1, "other ".concat((0, string_1.capitalize)(granularity))), "]</small>");
75
75
  }
76
76
  /** Gets residue count of the model chain segments the unit is a subset of */
77
77
  function getResidueCount(unit) {
@@ -88,6 +88,16 @@ function structureElementStatsLabel(stats, options) {
88
88
  return o.htmlStyling ? label : (0, string_1.stripTags)(label);
89
89
  }
90
90
  exports.structureElementStatsLabel = structureElementStatsLabel;
91
+ function structureElementLociLabelMany(locis, options) {
92
+ if (options === void 0) { options = {}; }
93
+ var stats = structure_1.StructureElement.Stats.create();
94
+ for (var _i = 0, locis_1 = locis; _i < locis_1.length; _i++) {
95
+ var l = locis_1[_i];
96
+ structure_1.StructureElement.Stats.add(stats, stats, structure_1.StructureElement.Stats.ofLoci(l));
97
+ }
98
+ return structureElementStatsLabel(stats, options);
99
+ }
100
+ exports.structureElementLociLabelMany = structureElementLociLabelMany;
91
101
  function _structureElementStatsLabel(stats, countsOnly, hidePrefix, condensed, reverse) {
92
102
  if (countsOnly === void 0) { countsOnly = false; }
93
103
  if (hidePrefix === void 0) { hidePrefix = false; }
@@ -228,10 +238,10 @@ function _elementLabel(location, granularity, hidePrefix, reverse) {
228
238
  var entry = location.unit.model.entry;
229
239
  if (entry.length > 30)
230
240
  entry = entry.substr(0, 27) + '\u2026'; // ellipsis
231
- label.push("<small>" + entry + "</small>"); // entry
241
+ label.push("<small>".concat(entry, "</small>")); // entry
232
242
  if (granularity !== 'structure') {
233
- label.push("<small>Model " + location.unit.model.modelNum + "</small>"); // model
234
- label.push("<small>Instance " + location.unit.conformation.operator.name + "</small>"); // instance
243
+ label.push("<small>Model ".concat(location.unit.model.modelNum, "</small>")); // model
244
+ label.push("<small>Instance ".concat(location.unit.conformation.operator.name, "</small>")); // instance
235
245
  }
236
246
  }
237
247
  if (structure_1.Unit.isAtomic(location.unit)) {
@@ -260,33 +270,33 @@ function _atomicElementLabel(location, granularity, hideOccupancy) {
260
270
  var occupancy = structure_1.StructureProperties.atom.occupancy(location);
261
271
  var microHetCompIds = structure_1.StructureProperties.residue.microheterogeneityCompIds(location);
262
272
  var compId = granularity === 'residue' && microHetCompIds.length > 1 ?
263
- "(" + microHetCompIds.join('|') + ")" : comp_id;
273
+ "(".concat(microHetCompIds.join('|'), ")") : comp_id;
264
274
  var label = [];
265
275
  switch (granularity) {
266
276
  case 'element':
267
- label.push("<b>" + atom_id + "</b>" + (alt_id ? "%" + alt_id : ''));
277
+ label.push("<b>".concat(atom_id, "</b>").concat(alt_id ? "%".concat(alt_id) : ''));
268
278
  case 'conformation':
269
279
  if (granularity === 'conformation' && alt_id) {
270
- label.push("<small>Conformation</small> <b>" + alt_id + "</b>");
280
+ label.push("<small>Conformation</small> <b>".concat(alt_id, "</b>"));
271
281
  }
272
282
  case 'residue':
273
283
  var seq_id = label_seq_id === auth_seq_id || !has_label_seq_id ? auth_seq_id : label_seq_id;
274
- label.push("<b>" + compId + " " + seq_id + "</b>" + (seq_id !== auth_seq_id ? " <small>[auth</small> <b>" + auth_seq_id + "</b><small>]</small>" : '') + "<b>" + (ins_code ? ins_code : '') + "</b>");
284
+ label.push("<b>".concat(compId, " ").concat(seq_id, "</b>").concat(seq_id !== auth_seq_id ? " <small>[auth</small> <b>".concat(auth_seq_id, "</b><small>]</small>") : '', "<b>").concat(ins_code ? ins_code : '', "</b>"));
275
285
  case 'chain':
276
286
  if (label_asym_id === auth_asym_id) {
277
- label.push("<b>" + label_asym_id + "</b>");
287
+ label.push("<b>".concat(label_asym_id, "</b>"));
278
288
  }
279
289
  else {
280
290
  if (granularity === 'chain' && structure_1.Unit.Traits.is(location.unit.traits, 1 /* MultiChain */)) {
281
- label.push("<small>[auth</small> <b>" + auth_asym_id + "</b><small>]</small>");
291
+ label.push("<small>[auth</small> <b>".concat(auth_asym_id, "</b><small>]</small>"));
282
292
  }
283
293
  else {
284
- label.push("<b>" + label_asym_id + "</b> <small>[auth</small> <b>" + auth_asym_id + "</b><small>]</small>");
294
+ label.push("<b>".concat(label_asym_id, "</b> <small>[auth</small> <b>").concat(auth_asym_id, "</b><small>]</small>"));
285
295
  }
286
296
  }
287
297
  }
288
298
  if (label.length > 0 && occupancy !== 1 && !hideOccupancy) {
289
- label[0] = label[0] + " <small>[occupancy</small> <b>" + Math.round(100 * occupancy) / 100 + "</b><small>]</small>";
299
+ label[0] = "".concat(label[0], " <small>[occupancy</small> <b>").concat(Math.round(100 * occupancy) / 100, "</b><small>]</small>");
290
300
  }
291
301
  return label.reverse();
292
302
  }
@@ -303,13 +313,13 @@ function _coarseElementLabel(location, granularity) {
303
313
  var entityIndex = structure_1.StructureProperties.coarse.entityKey(location);
304
314
  var seq = location.unit.model.sequence.byEntityKey[entityIndex];
305
315
  var comp_id = seq.sequence.compId.value(seq_id_begin - 1); // 1-indexed
306
- label.push("<b>" + comp_id + " " + seq_id_begin + "</b>");
316
+ label.push("<b>".concat(comp_id, " ").concat(seq_id_begin, "</b>"));
307
317
  }
308
318
  else {
309
- label.push("<b>" + seq_id_begin + "-" + seq_id_end + "</b>");
319
+ label.push("<b>".concat(seq_id_begin, "-").concat(seq_id_end, "</b>"));
310
320
  }
311
321
  case 'chain':
312
- label.push("<b>" + asym_id + "</b>");
322
+ label.push("<b>".concat(asym_id, "</b>"));
313
323
  }
314
324
  return label.reverse();
315
325
  }
@@ -318,11 +328,11 @@ function distanceLabel(pair, options) {
318
328
  if (options === void 0) { options = {}; }
319
329
  var o = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultLabelOptions), { measureOnly: false, unitLabel: '\u212B' }), options);
320
330
  var _a = pair.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1];
321
- var distance = linear_algebra_1.Vec3.distance(cA, cB).toFixed(2) + " " + o.unitLabel;
331
+ var distance = "".concat(linear_algebra_1.Vec3.distance(cA, cB).toFixed(2), " ").concat(o.unitLabel);
322
332
  if (o.measureOnly)
323
333
  return distance;
324
334
  var label = bundleLabel(pair, o);
325
- return o.condensed ? distance + " | " + label : "Distance " + distance + "</br>" + label;
335
+ return o.condensed ? "".concat(distance, " | ").concat(label) : "Distance ".concat(distance, "</br>").concat(label);
326
336
  }
327
337
  exports.distanceLabel = distanceLabel;
328
338
  function angleLabel(triple, options) {
@@ -331,22 +341,22 @@ function angleLabel(triple, options) {
331
341
  var _a = triple.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1], cC = _a[2];
332
342
  var vAB = linear_algebra_1.Vec3.sub((0, linear_algebra_1.Vec3)(), cA, cB);
333
343
  var vCB = linear_algebra_1.Vec3.sub((0, linear_algebra_1.Vec3)(), cC, cB);
334
- var angle = (0, misc_1.radToDeg)(linear_algebra_1.Vec3.angle(vAB, vCB)).toFixed(2) + "\u00B0";
344
+ var angle = "".concat((0, misc_1.radToDeg)(linear_algebra_1.Vec3.angle(vAB, vCB)).toFixed(2), "\u00B0");
335
345
  if (o.measureOnly)
336
346
  return angle;
337
347
  var label = bundleLabel(triple, o);
338
- return o.condensed ? angle + " | " + label : "Angle " + angle + "</br>" + label;
348
+ return o.condensed ? "".concat(angle, " | ").concat(label) : "Angle ".concat(angle, "</br>").concat(label);
339
349
  }
340
350
  exports.angleLabel = angleLabel;
341
351
  function dihedralLabel(quad, options) {
342
352
  if (options === void 0) { options = {}; }
343
353
  var o = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultLabelOptions), { measureOnly: false }), options);
344
354
  var _a = quad.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1], cC = _a[2], cD = _a[3];
345
- var dihedral = (0, misc_1.radToDeg)(linear_algebra_1.Vec3.dihedralAngle(cA, cB, cC, cD)).toFixed(2) + "\u00B0";
355
+ var dihedral = "".concat((0, misc_1.radToDeg)(linear_algebra_1.Vec3.dihedralAngle(cA, cB, cC, cD)).toFixed(2), "\u00B0");
346
356
  if (o.measureOnly)
347
357
  return dihedral;
348
358
  var label = bundleLabel(quad, o);
349
- return o.condensed ? dihedral + " | " + label : "Dihedral " + dihedral + "</br>" + label;
359
+ return o.condensed ? "".concat(dihedral, " | ").concat(label) : "Dihedral ".concat(dihedral, "</br>").concat(label);
350
360
  }
351
361
  exports.dihedralLabel = dihedralLabel;
352
362
  //# sourceMappingURL=label.js.map