molstar 2.3.5 → 2.3.9

package/package.json

@@ -1,155 +1,158 @@
-{
-  "name": "molstar",
-  "version": "2.3.5",
-  "description": "A comprehensive macromolecular library.",
-  "homepage": "https://github.com/molstar/molstar#readme",
-  "repository": {
-    "type": "git",
-    "url": "https://github.com/molstar/molstar.git"
-  },
-  "bugs": {
-    "url": "https://github.com/molstar/molstar/issues"
-  },
-  "scripts": {
-    "lint": "eslint .",
-    "lint-fix": "eslint . --fix",
-    "test": "npm run lint && jest",
-    "jest": "jest",
-    "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
-    "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
-    "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
-    "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
-    "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
-    "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
-    "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
-    "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
-    "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
-    "watch-tsc": "tsc --watch --incremental",
-    "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
-    "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
-    "watch-webpack": "webpack -w --mode development --stats minimal",
-    "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
-    "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
-    "serve": "http-server -p 1338 -g",
-    "model-server": "node lib/commonjs/servers/model/server.js",
-    "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
-    "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
-    "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
-    "preversion": "npm run test",
-    "version": "npm run build",
-    "postversion": "git push && git push --tags"
-  },
-  "files": [
-    "lib/",
-    "build/viewer/"
-  ],
-  "bin": {
-    "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
-    "cifschema": "lib/commonjs/cli/cifschema/index.js",
-    "model-server": "lib/commonjs/servers/model/server.js",
-    "model-server-query": "lib/commonjs/servers/model/query.js",
-    "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
-    "volume-server": "lib/commonjs/servers/volume/server.js",
-    "volume-server-query": "lib/commonjs/servers/volume/query.js",
-    "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
-  },
-  "nodemonConfig": {
-    "ignoreRoot": [
-      "./node_modules",
-      ".git"
-    ],
-    "ignore": [],
-    "delay": "2500"
-  },
-  "jest": {
-    "moduleFileExtensions": [
-      "ts",
-      "js"
-    ],
-    "transform": {
-      "\\.ts$": "ts-jest"
-    },
-    "moduleDirectories": [
-      "node_modules",
-      "lib"
-    ],
-    "testURL": "http://localhost/",
-    "testRegex": "\\.spec\\.ts$"
-  },
-  "author": "Mol* Contributors",
-  "contributors": [
-    "Alexander Rose <alexander.rose@weirdbyte.de>",
-    "David Sehnal <david.sehnal@gmail.com>",
-    "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
-    "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
-    "Ludovic Autin <autin@scripps.edu>",
-    "Michal Malý <michal.maly@ibt.cas.cz>",
-    "Jiří Černý <jiri.cerny@ibt.cas.cz>"
-  ],
-  "license": "MIT",
-  "devDependencies": {
-    "@graphql-codegen/add": "^3.1.0",
-    "@graphql-codegen/cli": "^2.2.0",
-    "@graphql-codegen/time": "^3.1.0",
-    "@graphql-codegen/typescript": "^2.2.2",
-    "@graphql-codegen/typescript-graphql-files-modules": "^2.1.0",
-    "@graphql-codegen/typescript-graphql-request": "^4.1.4",
-    "@graphql-codegen/typescript-operations": "^2.1.6",
-    "@types/cors": "^2.8.12",
-    "@typescript-eslint/eslint-plugin": "^4.32.0",
-    "@typescript-eslint/parser": "^4.32.0",
-    "benchmark": "^2.1.4",
-    "concurrently": "^6.3.0",
-    "cpx2": "^4.0.0",
-    "crypto-browserify": "^3.12.0",
-    "css-loader": "^6.3.0",
-    "eslint": "^7.32.0",
-    "extra-watch-webpack-plugin": "^1.0.3",
-    "file-loader": "^6.2.0",
-    "fs-extra": "^10.0.0",
-    "graphql": "^15.6.0",
-    "http-server": "^13.0.2",
-    "jest": "^27.2.4",
-    "mini-css-extract-plugin": "^2.3.0",
-    "node-sass": "^6.0.1",
-    "path-browserify": "^1.0.1",
-    "raw-loader": "^4.0.2",
-    "sass-loader": "^12.1.0",
-    "simple-git": "^2.46.0",
-    "stream-browserify": "^3.0.0",
-    "style-loader": "^3.3.0",
-    "ts-jest": "^27.0.5",
-    "typescript": "^4.4.3",
-    "webpack": "^5.56.0",
-    "webpack-cli": "^4.8.0",
-    "webpack-version-file-plugin": "^0.4.0"
-  },
-  "dependencies": {
-    "@types/argparse": "^2.0.10",
-    "@types/benchmark": "^2.1.1",
-    "@types/compression": "1.7.2",
-    "@types/express": "^4.17.13",
-    "@types/jest": "^27.0.2",
-    "@types/node": "^16.10.2",
-    "@types/node-fetch": "^2.5.12",
-    "@types/react": "^17.0.27",
-    "@types/react-dom": "^17.0.9",
-    "@types/swagger-ui-dist": "3.30.1",
-    "argparse": "^2.0.1",
-    "body-parser": "^1.19.0",
-    "compression": "^1.7.4",
-    "cors": "^2.8.5",
-    "express": "^4.17.1",
-    "h264-mp4-encoder": "^1.0.12",
-    "immer": "^9.0.6",
-    "immutable": "^3.8.2",
-    "node-fetch": "^2.6.2",
-    "react": "^17.0.2",
-    "react-dom": "^17.0.2",
-    "rxjs": "^7.3.1",
-    "swagger-ui-dist": "^3.52.3",
-    "tslib": "^2.3.1",
-    "util.promisify": "^1.1.1",
-    "xhr2": "^0.2.1"
-  }
-}
+{
+  "name": "molstar",
+  "version": "2.3.9",
+  "description": "A comprehensive macromolecular library.",
+  "homepage": "https://github.com/molstar/molstar#readme",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/molstar/molstar.git"
+  },
+  "bugs": {
+    "url": "https://github.com/molstar/molstar/issues"
+  },
+  "scripts": {
+    "lint": "eslint .",
+    "lint-fix": "eslint . --fix",
+    "test": "npm run lint && jest",
+    "jest": "jest",
+    "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
+    "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
+    "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
+    "build-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/",
+    "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
+    "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
+    "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
+    "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
+    "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
+    "watch-tsc": "tsc --watch --incremental",
+    "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
+    "watch-extra": "cpx \"src/**/*.{scss,html,ico}\" lib/ --watch",
+    "watch-webpack": "webpack -w --mode development --stats minimal",
+    "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
+    "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
+    "serve": "http-server -p 1338 -g",
+    "model-server": "node lib/commonjs/servers/model/server.js",
+    "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
+    "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
+    "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
+    "preversion": "npm run test",
+    "version": "npm run build",
+    "postversion": "git push && git push --tags"
+  },
+  "files": [
+    "lib/",
+    "build/viewer/"
+  ],
+  "bin": {
+    "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
+    "cifschema": "lib/commonjs/cli/cifschema/index.js",
+    "model-server": "lib/commonjs/servers/model/server.js",
+    "model-server-query": "lib/commonjs/servers/model/query.js",
+    "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
+    "volume-server": "lib/commonjs/servers/volume/server.js",
+    "volume-server-query": "lib/commonjs/servers/volume/query.js",
+    "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
+  },
+  "nodemonConfig": {
+    "ignoreRoot": [
+      "./node_modules",
+      ".git"
+    ],
+    "ignore": [],
+    "delay": "2500"
+  },
+  "jest": {
+    "moduleFileExtensions": [
+      "ts",
+      "js"
+    ],
+    "transform": {
+      "\\.ts$": "ts-jest"
+    },
+    "moduleDirectories": [
+      "node_modules",
+      "lib"
+    ],
+    "testURL": "http://localhost/",
+    "testRegex": "\\.spec\\.ts$"
+  },
+  "author": "Mol* Contributors",
+  "contributors": [
+    "Alexander Rose <alexander.rose@weirdbyte.de>",
+    "David Sehnal <david.sehnal@gmail.com>",
+    "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
+    "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
+    "Ludovic Autin <autin@scripps.edu>",
+    "Michal Malý <michal.maly@ibt.cas.cz>",
+    "Jiří Černý <jiri.cerny@ibt.cas.cz>"
+  ],
+  "license": "MIT",
+  "devDependencies": {
+    "@graphql-codegen/add": "^3.1.0",
+    "@graphql-codegen/cli": "^2.2.0",
+    "@graphql-codegen/time": "^3.1.0",
+    "@graphql-codegen/typescript": "^2.2.2",
+    "@graphql-codegen/typescript-graphql-files-modules": "^2.1.0",
+    "@graphql-codegen/typescript-graphql-request": "^4.1.4",
+    "@graphql-codegen/typescript-operations": "^2.1.6",
+    "@types/cors": "^2.8.12",
+    "@types/gl": "^4.1.0",
+    "@types/jest": "^27.0.2",
+    "@typescript-eslint/eslint-plugin": "^4.32.0",
+    "@typescript-eslint/parser": "^4.32.0",
+    "benchmark": "^2.1.4",
+    "concurrently": "^6.3.0",
+    "cpx2": "^4.0.0",
+    "crypto-browserify": "^3.12.0",
+    "css-loader": "^6.3.0",
+    "eslint": "^7.32.0",
+    "extra-watch-webpack-plugin": "^1.0.3",
+    "file-loader": "^6.2.0",
+    "fs-extra": "^10.0.0",
+    "graphql": "^15.6.0",
+    "http-server": "^13.0.2",
+    "jest": "^27.2.4",
+    "mini-css-extract-plugin": "^2.3.0",
+    "path-browserify": "^1.0.1",
+    "raw-loader": "^4.0.2",
+    "sass": "^1.43.4",
+    "sass-loader": "^12.3.0",
+    "simple-git": "^2.46.0",
+    "stream-browserify": "^3.0.0",
+    "style-loader": "^3.3.0",
+    "ts-jest": "^27.0.5",
+    "typescript": "^4.5.2",
+    "webpack": "^5.64.1",
+    "webpack-cli": "^4.9.1"
+  },
+  "dependencies": {
+    "@types/argparse": "^2.0.10",
+    "@types/benchmark": "^2.1.1",
+    "@types/compression": "1.7.2",
+    "@types/express": "^4.17.13",
+    "@types/node": "^16.10.2",
+    "@types/node-fetch": "^2.5.12",
+    "@types/react": "^17.0.27",
+    "@types/react-dom": "^17.0.9",
+    "@types/swagger-ui-dist": "3.30.1",
+    "argparse": "^2.0.1",
+    "body-parser": "^1.19.0",
+    "compression": "^1.7.4",
+    "cors": "^2.8.5",
+    "express": "^4.17.1",
+    "h264-mp4-encoder": "^1.0.12",
+    "immer": "^9.0.6",
+    "immutable": "^3.8.2",
+    "node-fetch": "^2.6.2",
+    "react": "^17.0.2",
+    "react-dom": "^17.0.2",
+    "rxjs": "^7.3.1",
+    "swagger-ui-dist": "^3.52.3",
+    "tslib": "^2.3.1",
+    "util.promisify": "^1.1.1",
+    "xhr2": "^0.2.1"
+  },
+  "optionalDependencies": {
+    "gl": "^4.9.2"
+  }
+}

package/CHANGELOG.md

@@ -1,181 +0,0 @@
-# Change Log
-All notable changes to this project will be documented in this file, following the suggestions of [Keep a CHANGELOG](http://keepachangelog.com/). This project adheres to [Semantic Versioning](http://semver.org/) for its most widely used - and defacto - public interfaces.
-
-Note that since we don't clearly distinguish between a public and private interfaces there will be changes in non-major versions that are potentially breaking. If we make breaking changes to less used interfaces we will highlight it in here.
-
-
-## [Unreleased]
-
-## [v2.3.5] - 2021-10-19
-
-- Fix sequence viewer for PDB files with COMPND record and multichain entities.
-- Fix index pair bonds order assignment
-
-## [v2.3.4] - 2021-10-12
-
-- Fix pickScale not taken into account in line/point shader
-- Add pixel-scale, pick-scale & pick-padding GET params to Viewer app
-- Fix selecting bonds not adding their atoms in selection manager
-- Add ``preferAtoms`` option to SelectLoci/HighlightLoci behaviors
-- Make the implicit atoms of bond visuals pickable
-    - Add ``preferAtomPixelPadding`` to Canvas3dInteractionHelper
-- Add points & crosses visuals to Line representation
-- Add ``pickPadding`` config option (look around in case target pixel is empty)
-- Add ``multipleBonds`` param to bond visuals with options: off, symmetric, offset
-- Fix ``argparse`` config in servers.
-
-## [v2.3.3] - 2021-10-01
-
-- Fix direct volume shader
-
-## [v2.3.2] - 2021-10-01
-
-- Prefer WebGL1 on iOS devices until WebGL2 support has stabilized.
-
-## [v2.3.1] - 2021-09-28
-
-- Add Charmm saccharide names
-- Treat missing occupancy column as occupancy of 1
-- Fix line shader not accounting for aspect ratio
-- [Breaking] Fix point repr & shader
-    - Was unusable with ``wboit``
-    - Replaced ``pointFilledCircle`` & ``pointEdgeBleach`` params by ``pointStyle`` (square, circle, fuzzy)
-    - Set ``pointSizeAttenuation`` to false by default
-    - Set ``sizeTheme`` to ``uniform`` by default
-- Add ``markerPriority`` option to Renderer (useful in combination with edges of marking pass)
-- Add support support for ``chem_comp_bond`` and ``struct_conn`` categories (fixes ModelServer behavior where these categories should have been present)
-- Model and VolumeServer: fix argparse config
-
-## [v2.3.0] - 2021-09-06
-
-- Take include/exclude flags into account when displaying aromatic bonds
-- Improve marking performance
-    - Avoid unnecessary draw calls/ui updates when marking
-    - Check if loci is superset of visual
-    - Check if loci overlaps with unit visual
-    - Ensure ``Interval`` is used for ranges instead of ``SortedArray``
-    - Add uniform marker type
-    - Special case for reversing previous mark
-- Add optional marking pass
-    - Outlines visible and hidden parts of highlighted/selected groups
-    - Add highlightStrength/selectStrength renderer params
-
-## [v2.2.3] - 2021-08-25
-
-- Add ``invertCantorPairing`` helper function
-- Add ``Mesh`` processing helper ``.smoothEdges``
-- Smooth border of molecular-surface with ``includeParent`` enabled
-- Hide ``includeParent`` option from gaussian-surface visuals (not particularly useful)
-- Improved ``StructureElement.Loci.size`` performance (for marking large cellpack models)
-- Fix new ``TransformData`` issues (camera/bounding helper not showing up)
-- Improve marking performance (avoid superfluous calls to ``StructureElement.Loci.isWholeStructure``)
-
-## [v2.2.2] - 2021-08-11
-
-- Fix ``TransformData`` issues [#133](https://github.com/molstar/molstar/issues/133)
-- Fix ``mol-script`` query compiler const expression recognition.
-
-## [v2.2.1] - 2021-08-02
-
-- Add surrounding atoms (5 Angstrom) structure selection query
-- [Breaking] Add maxDistance prop to ``IndexPairBonds``
-- Fix coordinateSystem not handled in ``Structure.asParent``
-- Add ``dynamicBonds`` to ``Structure`` props (force re-calc on model change)
-    - Expose as optional param in root structure transform helper
-- Add overpaint support to geometry exporters
-- ``InputObserver`` improvements
-  - normalize wheel speed across browsers/platforms
-  - support Safari gestures (used by ``TrackballControls``)
-  - ``PinchInput.fractionDelta`` and use it in ``TrackballControls``
-
-## [v2.2.0] - 2021-07-31
-
-- Add ``tubularHelices`` parameter to Cartoon representation
-- Add ``SdfFormat`` and update SDF parser to be able to parse data headers according to spec (hopefully :)) #230
-- Fix mononucleotides detected as polymer components (#229)
-- Set default outline scale back to 1
-- Improved DCD reader cell angle handling (interpret near 0 angles as 90 deg)
-- Handle more residue/atom names commonly used in force-fields
-- Add USDZ support to ``geo-export`` extension.
-- Fix ``includeParent`` support for multi-instance bond visuals.
-- Add ``operator`` Loci granularity, selecting everything with the same operator name.
-- Prefer ``_label_seq_id`` fields in secondary structure assignment.
-- Support new EMDB API (https://www.ebi.ac.uk/emdb/api/entry/map/[EMBD-ID]) for EM volume contour levels.
-- ``Canvas3D`` tweaks:
-    - Update ``forceDraw`` logic.
-    - Ensure the scene is re-rendered when viewport size changes.
-    - Support ``noDraw`` mode in ``PluginAnimationLoop``.
-
-## [v2.1.0] - 2021-07-05
-
-- Add parameter for to display aromatic bonds as dashes next to solid cylinder/line.
-- Add backbone representation
-- Fix outline in orthographic mode and set default scale to 2.
-
-## [v2.0.7] - 2021-06-23
-
-- Add ability to specify ``volumeIndex`` in ``Viewer.loadVolumeFromUrl`` to better support Volume Server inputs.
-- Support in-place reordering for trajectory ``Frame.x/y/z`` arrays for better memory efficiency.
-- Fixed text CIF encoder edge cases (most notably single whitespace not being escaped).
-
-## [v2.0.6] - 2021-06-01
-
-- Add glTF (GLB) and STL support to ``geo-export`` extension.
-- Protein crosslink improvements
-    - Change O-S bond distance to allow for NOS bridges (doi:10.1038/s41586-021-03513-3)
-    - Added NOS-bridges query & improved disulfide-bridges query
-- Fix #178: ``IndexPairBonds`` for non-single residue structures (bug due to atom reordering).
-- Add volumetric color smoothing for MolecularSurface and GaussianSurface representations (#173)
-- Fix nested 3d grid lookup that caused results being overwritten in non-covalent interactions computation.
-- Basic implementation of ``BestDatabaseSequenceMapping`` (parse from CIF, color theme, superposition).
-- Add atom id ranges support to Selection UI.
-
-## [v2.0.5] - 2021-04-26
-
-- Ability to pass ``Canvas3DContext`` to ``PluginContext.fromCanvas``.
-- Relative frame support for ``Canvas3D`` viewport.
-- Fix bug in screenshot copy UI.
-- Add ability to select residues from a list of identifiers to the Selection UI.
-- Fix SSAO bugs when used with ``Canvas3D`` viewport.
-- Support for  full pausing (no draw) rendering: ``Canvas3D.pause(true)``.
-- Add ``MeshBuilder.addMesh``.
-- Add ``Torus`` primitive.
-- Lazy volume loading support.
-- [Breaking] ``Viewer.loadVolumeFromUrl`` signature change.
-    - ``loadVolumeFromUrl(url, format, isBinary, isovalues, entryId)`` => ``loadVolumeFromUrl({ url, format, isBinary }, isovalues, { entryId, isLazy })``
-- Add ``TextureMesh`` support to ``geo-export`` extension.
-
-## [v2.0.4] - 2021-04-20
-
-- [WIP] Mesh export extension
-- ``Structure.eachAtomicHierarchyElement`` (#161)
-- Fixed reading multi-line values in SDF format
-- Fixed Measurements UI labels (#166)
-
-## [v2.0.3] - 2021-04-09
-### Added
-- Support for ``ColorTheme.palette`` designed for providing gradient-like coloring.
-
-### Changed
-- [Breaking] The ``zip`` function is now asynchronous and expects a ``RuntimeContext``. Also added ``Zip()`` returning a ``Task``.
-- [Breaking] Add ``CubeGridFormat`` in ``alpha-orbitals`` extension.
-
-## [v2.0.2] - 2021-03-29
-### Added
-- ``Canvas3D.getRenderObjects``.
-- [WIP] Animate state interpolating, including model trajectories
-
-### Changed
-- Recognise MSE, SEP, TPO, PTR and PCA as non-standard amino-acids.
-
-### Fixed
-- VolumeFromDensityServerCif transform label
-
-
-## [v2.0.1] - 2021-03-23
-### Fixed
-- Exclude tsconfig.commonjs.tsbuildinfo from npm bundle
-
-
-## [v2.0.0] - 2021-03-23
-Too many changes to list as this is the start of the changelog... Notably, default exports are now forbidden.

package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts

@@ -1 +0,0 @@
-export declare const wboit_params = "\n#if defined(dRenderVariant_colorWboit)\n    #if !defined(dRenderMode_volume) && !defined(dRenderMode_isosurface)\n        uniform sampler2D tDepth;\n        uniform vec2 uDrawingBufferSize;\n\n        float getDepth(const in vec2 coords) {\n            // always packed due to merged depth from primitives and volumes\n            return unpackRGBAToDepth(texture2D(tDepth, coords));\n        }\n    #endif\n#endif\n\nuniform bool uRenderWboit;\n\nfloat calcDepth(const in vec3 pos) {\n    vec2 clipZW = pos.z * uProjection[2].zw + uProjection[3].zw;\n    return 0.5 + 0.5 * clipZW.x / clipZW.y;\n}\n";

package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js

@@ -1,5 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.wboit_params = void 0;
-exports.wboit_params = "\n#if defined(dRenderVariant_colorWboit)\n    #if !defined(dRenderMode_volume) && !defined(dRenderMode_isosurface)\n        uniform sampler2D tDepth;\n        uniform vec2 uDrawingBufferSize;\n\n        float getDepth(const in vec2 coords) {\n            // always packed due to merged depth from primitives and volumes\n            return unpackRGBAToDepth(texture2D(tDepth, coords));\n        }\n    #endif\n#endif\n\nuniform bool uRenderWboit;\n\nfloat calcDepth(const in vec3 pos) {\n    vec2 clipZW = pos.z * uProjection[2].zw + uProjection[3].zw;\n    return 0.5 + 0.5 * clipZW.x / clipZW.y;\n}\n";
-//# sourceMappingURL=wboit-params.glsl.js.map

package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"wboit-params.glsl.js","sourceRoot":"","sources":["../../../../../src/mol-gl/shader/chunks/wboit-params.glsl.ts"],"names":[],"mappings":";;;AAAa,QAAA,YAAY,GAAG,4lBAmB3B,CAAC"}

package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts

@@ -1,6 +0,0 @@
-/**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-export declare function guessElement(str: string): string;

package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js

@@ -1,40 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.guessElement = void 0;
-var elm1 = ['H', 'C', 'O', 'N', 'S', 'P'];
-var elm2 = ['NA', 'CL', 'FE'];
-function charAtIsNumber(str, index) {
-    var code = str.charCodeAt(index);
-    return code >= 48 && code <= 57;
-}
-function guessElement(str) {
-    var at = str.trim().toUpperCase();
-    if (charAtIsNumber(at, 0))
-        at = at.substr(1);
-    // parse again to check for a second integer
-    if (charAtIsNumber(at, 0))
-        at = at.substr(1);
-    var n = at.length;
-    if (n === 0)
-        return '';
-    if (n === 1)
-        return at;
-    if (n === 2) {
-        if (elm2.indexOf(at) !== -1)
-            return at;
-        if (elm1.indexOf(at[0]) !== -1)
-            return at[0];
-    }
-    if (n >= 3) {
-        if (elm1.indexOf(at[0]) !== -1)
-            return at[0];
-    }
-    return '';
-}
-exports.guessElement = guessElement;
-//# sourceMappingURL=guess-element.js.map

package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map

@@ -1 +0,0 @@
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package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js

@@ -1,3 +0,0 @@
-"use strict";
-// TODO
-//# sourceMappingURL=aromatic-ring-mesh.js.map

package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"aromatic-ring-mesh.js","sourceRoot":"","sources":["../../../../../src/mol-repr/structure/visual/aromatic-ring-mesh.ts"],"names":[],"mappings":";AAAA,OAAO"}

package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts

@@ -1,37 +0,0 @@
-/**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Unit, Structure, StructureElement } from '../../../../../mol-model/structure';
-import { Iterator } from '../../../../../mol-data/iterator';
-/** Iterates over consecutive pairs of residues/coarse elements in polymers */
-export declare function PolymerBackboneIterator(structure: Structure, unit: Unit): Iterator<PolymerBackbonePair>;
-interface PolymerBackbonePair {
-    centerA: StructureElement.Location;
-    centerB: StructureElement.Location;
-}
-export declare class AtomicPolymerBackboneIterator implements Iterator<PolymerBackbonePair> {
-    private unit;
-    private traceElementIndex;
-    private value;
-    private polymerIt;
-    private residueIt;
-    private state;
-    private residueSegment;
-    hasNext: boolean;
-    move(): PolymerBackbonePair;
-    constructor(structure: Structure, unit: Unit.Atomic);
-}
-export declare class CoarsePolymerBackboneIterator implements Iterator<PolymerBackbonePair> {
-    private unit;
-    private value;
-    private polymerIt;
-    private polymerSegment;
-    private state;
-    private elementIndex;
-    hasNext: boolean;
-    move(): PolymerBackbonePair;
-    constructor(structure: Structure, unit: Unit.Spheres | Unit.Gaussians);
-}
-export {};