molstar 2.3.5 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1658) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +176 -176
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +94 -94
  5. package/build/viewer/molstar.css +1 -2
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/index.js.map +1 -1
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.d.ts +290 -1
  12. package/lib/apps/viewer/index.html +94 -94
  13. package/lib/apps/viewer/index.js +91 -5
  14. package/lib/apps/viewer/index.js.map +1 -1
  15. package/lib/cli/chem-comp-dict/create-ions.js +1 -1
  16. package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
  17. package/lib/cli/chem-comp-dict/create-table.js +3 -3
  18. package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
  19. package/lib/cli/chem-comp-dict/util.js +2 -2
  20. package/lib/cli/chem-comp-dict/util.js.map +1 -1
  21. package/lib/cli/cif2bcif/converter.js +2 -2
  22. package/lib/cli/cif2bcif/converter.js.map +1 -1
  23. package/lib/cli/cifschema/index.js +12 -12
  24. package/lib/cli/cifschema/index.js.map +1 -1
  25. package/lib/cli/cifschema/util/cif-dic.js +19 -19
  26. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  27. package/lib/cli/cifschema/util/generate.js +21 -21
  28. package/lib/cli/cifschema/util/generate.js.map +1 -1
  29. package/lib/cli/cifschema/util/schema.js +1 -1
  30. package/lib/cli/cifschema/util/schema.js.map +1 -1
  31. package/lib/cli/lipid-params/index.js +3 -3
  32. package/lib/cli/lipid-params/index.js.map +1 -1
  33. package/lib/cli/state-docs/index.js +4 -4
  34. package/lib/cli/state-docs/index.js.map +1 -1
  35. package/lib/cli/state-docs/pd-to-md.js +10 -10
  36. package/lib/cli/state-docs/pd-to-md.js.map +1 -1
  37. package/lib/cli/structure-info/model.js +18 -18
  38. package/lib/cli/structure-info/model.js.map +1 -1
  39. package/lib/cli/structure-info/volume.js +1 -1
  40. package/lib/cli/structure-info/volume.js.map +1 -1
  41. package/lib/commonjs/apps/docking-viewer/index.js +1 -1
  42. package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
  43. package/lib/commonjs/apps/viewer/index.d.ts +289 -0
  44. package/lib/commonjs/apps/viewer/index.js +91 -5
  45. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  46. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
  47. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
  48. package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
  49. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
  50. package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
  51. package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
  52. package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
  53. package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
  54. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  55. package/lib/commonjs/cli/cifschema/index.js +12 -12
  56. package/lib/commonjs/cli/cifschema/index.js.map +1 -1
  57. package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
  58. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  59. package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
  60. package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
  61. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  62. package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
  63. package/lib/commonjs/cli/lipid-params/index.js +3 -3
  64. package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
  65. package/lib/commonjs/cli/state-docs/index.js +4 -4
  66. package/lib/commonjs/cli/state-docs/index.js.map +1 -1
  67. package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
  68. package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
  69. package/lib/commonjs/cli/structure-info/model.js +18 -18
  70. package/lib/commonjs/cli/structure-info/model.js.map +1 -1
  71. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  72. package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
  73. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  74. package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
  75. package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
  76. package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
  77. package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
  78. package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
  79. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
  80. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
  81. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
  82. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
  83. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  84. package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
  85. package/lib/commonjs/examples/task.js +6 -6
  86. package/lib/commonjs/examples/task.js.map +1 -1
  87. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
  88. package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
  89. package/lib/commonjs/extensions/anvil/representation.js +1 -1
  90. package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
  91. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  92. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  93. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  94. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  95. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  96. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  97. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  98. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  100. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  101. package/lib/commonjs/extensions/cellpack/model.js +203 -65
  102. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  103. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  104. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  105. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  106. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  107. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  108. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  109. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  110. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  111. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  112. package/lib/commonjs/extensions/cellpack/state.js +234 -27
  113. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  114. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  115. package/lib/commonjs/extensions/cellpack/util.js +34 -6
  116. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
  119. package/lib/commonjs/extensions/g3d/data.js +2 -2
  120. package/lib/commonjs/extensions/g3d/data.js.map +1 -1
  121. package/lib/commonjs/extensions/g3d/model.js +2 -2
  122. package/lib/commonjs/extensions/g3d/model.js.map +1 -1
  123. package/lib/commonjs/extensions/geo-export/controls.js +2 -2
  124. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  125. package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
  126. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  127. package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
  128. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  129. package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
  130. package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
  131. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
  132. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  133. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  134. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  135. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  136. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
  137. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  138. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
  139. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  140. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
  141. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
  142. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  143. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
  144. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
  145. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
  146. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
  147. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  148. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
  149. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
  150. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
  151. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
  152. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
  153. package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
  154. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  155. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  156. package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
  157. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  158. package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
  159. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  160. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  161. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
  162. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
  163. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  164. package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
  165. package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
  166. package/lib/commonjs/mol-canvas3d/util.js +1 -1
  167. package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
  168. package/lib/commonjs/mol-data/db/table.js +1 -1
  169. package/lib/commonjs/mol-data/db/table.js.map +1 -1
  170. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
  171. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
  172. package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
  173. package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
  174. package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
  175. package/lib/commonjs/mol-data/int/tuple.js +1 -1
  176. package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
  177. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
  178. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
  179. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  180. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  181. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  182. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  183. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  184. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  185. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  186. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  187. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  188. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  189. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  190. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  191. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
  192. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  193. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  194. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  195. package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
  196. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  197. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  198. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  199. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  200. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  201. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  202. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  203. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  204. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  205. package/lib/commonjs/mol-gl/_spec/gl.shim.js +5 -5
  206. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  207. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  208. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  209. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  210. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  211. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  212. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  213. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  214. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  215. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  216. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  217. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  218. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  219. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  220. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +7 -45
  221. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  222. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  223. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  224. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  225. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  226. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  227. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  228. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  229. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  230. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  231. package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
  232. package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
  233. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
  234. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
  235. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  236. package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
  237. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  238. package/lib/commonjs/mol-gl/scene.js +1 -1
  239. package/lib/commonjs/mol-gl/scene.js.map +1 -1
  240. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  241. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  242. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  243. package/lib/commonjs/mol-gl/shader-code.js +8 -8
  244. package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
  245. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
  246. package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
  247. package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
  248. package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
  249. package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
  250. package/lib/commonjs/mol-gl/webgl/context.js +6 -4
  251. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  252. package/lib/commonjs/mol-gl/webgl/extensions.js +5 -1
  253. package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
  254. package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
  255. package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
  256. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  257. package/lib/commonjs/mol-gl/webgl/program.js +14 -12
  258. package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
  259. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
  260. package/lib/commonjs/mol-gl/webgl/render-item.js +2 -2
  261. package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
  262. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  263. package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
  264. package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
  265. package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
  266. package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
  267. package/lib/commonjs/mol-gl/webgl/state.js +25 -1
  268. package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
  269. package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
  270. package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
  271. package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
  272. package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
  273. package/lib/commonjs/mol-io/common/file-handle.js +1 -1
  274. package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
  275. package/lib/commonjs/mol-io/common/typed-array.js +1 -1
  276. package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
  277. package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
  278. package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
  279. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
  280. package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
  281. package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
  282. package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
  283. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  284. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
  285. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
  286. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +12 -12
  287. package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
  288. package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
  289. package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
  290. package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
  291. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
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@@ -1,137 +1,137 @@
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- <!DOCTYPE html>
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- <html lang="en">
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- <head>
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- <meta charset="utf-8" />
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- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
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- <title>Mol* Plugin Wrapper</title>
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- <style>
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- * {
9
- margin: 0;
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- padding: 0;
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- box-sizing: border-box;
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- }
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- #app {
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- position: absolute;
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- left: 160px;
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- top: 100px;
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- width: 600px;
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- height: 600px;
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- border: 1px solid #ccc;
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- }
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-
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- #controls {
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- position: absolute;
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- width: 130px;
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- top: 10px;
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- left: 10px;
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- }
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-
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- #controls > button {
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- display: block;
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- width: 100%;
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- text-align: left;
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- }
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-
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- #controls > hr {
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- margin: 5px 0;
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- }
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-
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- #controls > input, #controls > select {
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- width: 100%;
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- display: block;
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- }
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- </style>
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- <link rel="stylesheet" type="text/css" href="molstar.css" />
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- <script type="text/javascript" src="./index.js"></script>
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- </head>
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- <body>
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- <div id='controls'>
49
- <h3>Source</h3>
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- <input type='text' id='url' placeholder='url' />
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- <input type='text' id='assemblyId' placeholder='assembly id' />
52
- <select id='format'>
53
- <option value='mmcif' selected>mmCIF</option>
54
- <option value='pdb'>PDB</option>
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- </select>
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- </div>
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- <div id="app"></div>
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- <script>
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- function $(id) { return document.getElementById(id); }
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-
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- var pdbId = '1grm', assemblyId= '1';
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- var url = 'https://www.ebi.ac.uk/pdbe/static/entry/' + pdbId + '_updated.cif';
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- var format = 'mmcif';
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-
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- $('url').value = url;
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- $('url').onchange = function (e) { url = e.target.value; }
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- $('assemblyId').value = assemblyId;
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- $('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
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- $('format').value = format;
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- $('format').onchange = function (e) { format = e.target.value; }
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-
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- BasicMolStarWrapper.init('app' /** or document.getElementById('app') */);
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- BasicMolStarWrapper.setBackground(0xffffff);
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-
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- addControl('Load Asym Unit', () => BasicMolStarWrapper.load({ url: url, format: format }));
76
- addControl('Load Assembly', () => BasicMolStarWrapper.load({ url: url, format: format, assemblyId: assemblyId }));
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-
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- addSeparator();
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-
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- addHeader('Camera');
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- addControl('Toggle Spin', () => BasicMolStarWrapper.toggleSpin());
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-
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- addSeparator();
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-
85
- addHeader('Animation');
86
-
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- // adjust this number to make the animation faster or slower
88
- // requires to "restart" the animation if changed
89
- BasicMolStarWrapper.animate.modelIndex.targetFps = 30;
90
-
91
- addControl('Play To End', () => BasicMolStarWrapper.animate.modelIndex.onceForward());
92
- addControl('Play To Start', () => BasicMolStarWrapper.animate.modelIndex.onceBackward());
93
- addControl('Play Palindrome', () => BasicMolStarWrapper.animate.modelIndex.palindrome());
94
- addControl('Play Loop', () => BasicMolStarWrapper.animate.modelIndex.loop());
95
- addControl('Stop', () => BasicMolStarWrapper.animate.modelIndex.stop());
96
-
97
- addHeader('Misc');
98
-
99
- addControl('Apply Stripes', () => BasicMolStarWrapper.coloring.applyStripes());
100
- addControl('Apply Custom Theme', () => BasicMolStarWrapper.coloring.applyCustomTheme());
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- addControl('Default Coloring', () => BasicMolStarWrapper.coloring.applyDefault());
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-
103
- addHeader('Interactivity');
104
- addControl('Highlight seq_id=7', () => BasicMolStarWrapper.interactivity.highlightOn());
105
- addControl('Clear Highlight', () => BasicMolStarWrapper.interactivity.clearHighlight());
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-
107
- addHeader('Tests');
108
-
109
- addControl('Static Superposition', () => BasicMolStarWrapper.tests.staticSuperposition());
110
- addControl('Dynamic Superposition', () => BasicMolStarWrapper.tests.dynamicSuperposition());
111
- addControl('Validation Tooltip', () => BasicMolStarWrapper.tests.toggleValidationTooltip());
112
-
113
- addControl('Show Toasts', () => BasicMolStarWrapper.tests.showToasts());
114
- addControl('Hide Toasts', () => BasicMolStarWrapper.tests.hideToasts());
115
-
116
- ////////////////////////////////////////////////////////
117
-
118
- function addControl(label, action) {
119
- var btn = document.createElement('button');
120
- btn.onclick = action;
121
- btn.innerText = label;
122
- $('controls').appendChild(btn);
123
- }
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-
125
- function addSeparator() {
126
- var hr = document.createElement('hr');
127
- $('controls').appendChild(hr);
128
- }
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-
130
- function addHeader(header) {
131
- var h = document.createElement('h3');
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- h.innerText = header;
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- $('controls').appendChild(h);
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- }
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- </script>
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- </body>
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+ <!DOCTYPE html>
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+ <html lang="en">
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+ <head>
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+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <title>Mol* Plugin Wrapper</title>
7
+ <style>
8
+ * {
9
+ margin: 0;
10
+ padding: 0;
11
+ box-sizing: border-box;
12
+ }
13
+ #app {
14
+ position: absolute;
15
+ left: 160px;
16
+ top: 100px;
17
+ width: 600px;
18
+ height: 600px;
19
+ border: 1px solid #ccc;
20
+ }
21
+
22
+ #controls {
23
+ position: absolute;
24
+ width: 130px;
25
+ top: 10px;
26
+ left: 10px;
27
+ }
28
+
29
+ #controls > button {
30
+ display: block;
31
+ width: 100%;
32
+ text-align: left;
33
+ }
34
+
35
+ #controls > hr {
36
+ margin: 5px 0;
37
+ }
38
+
39
+ #controls > input, #controls > select {
40
+ width: 100%;
41
+ display: block;
42
+ }
43
+ </style>
44
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
45
+ <script type="text/javascript" src="./index.js"></script>
46
+ </head>
47
+ <body>
48
+ <div id='controls'>
49
+ <h3>Source</h3>
50
+ <input type='text' id='url' placeholder='url' />
51
+ <input type='text' id='assemblyId' placeholder='assembly id' />
52
+ <select id='format'>
53
+ <option value='mmcif' selected>mmCIF</option>
54
+ <option value='pdb'>PDB</option>
55
+ </select>
56
+ </div>
57
+ <div id="app"></div>
58
+ <script>
59
+ function $(id) { return document.getElementById(id); }
60
+
61
+ var pdbId = '1grm', assemblyId= '1';
62
+ var url = 'https://www.ebi.ac.uk/pdbe/static/entry/' + pdbId + '_updated.cif';
63
+ var format = 'mmcif';
64
+
65
+ $('url').value = url;
66
+ $('url').onchange = function (e) { url = e.target.value; }
67
+ $('assemblyId').value = assemblyId;
68
+ $('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
69
+ $('format').value = format;
70
+ $('format').onchange = function (e) { format = e.target.value; }
71
+
72
+ BasicMolStarWrapper.init('app' /** or document.getElementById('app') */);
73
+ BasicMolStarWrapper.setBackground(0xffffff);
74
+
75
+ addControl('Load Asym Unit', () => BasicMolStarWrapper.load({ url: url, format: format }));
76
+ addControl('Load Assembly', () => BasicMolStarWrapper.load({ url: url, format: format, assemblyId: assemblyId }));
77
+
78
+ addSeparator();
79
+
80
+ addHeader('Camera');
81
+ addControl('Toggle Spin', () => BasicMolStarWrapper.toggleSpin());
82
+
83
+ addSeparator();
84
+
85
+ addHeader('Animation');
86
+
87
+ // adjust this number to make the animation faster or slower
88
+ // requires to "restart" the animation if changed
89
+ BasicMolStarWrapper.animate.modelIndex.targetFps = 30;
90
+
91
+ addControl('Play To End', () => BasicMolStarWrapper.animate.modelIndex.onceForward());
92
+ addControl('Play To Start', () => BasicMolStarWrapper.animate.modelIndex.onceBackward());
93
+ addControl('Play Palindrome', () => BasicMolStarWrapper.animate.modelIndex.palindrome());
94
+ addControl('Play Loop', () => BasicMolStarWrapper.animate.modelIndex.loop());
95
+ addControl('Stop', () => BasicMolStarWrapper.animate.modelIndex.stop());
96
+
97
+ addHeader('Misc');
98
+
99
+ addControl('Apply Stripes', () => BasicMolStarWrapper.coloring.applyStripes());
100
+ addControl('Apply Custom Theme', () => BasicMolStarWrapper.coloring.applyCustomTheme());
101
+ addControl('Default Coloring', () => BasicMolStarWrapper.coloring.applyDefault());
102
+
103
+ addHeader('Interactivity');
104
+ addControl('Highlight seq_id=7', () => BasicMolStarWrapper.interactivity.highlightOn());
105
+ addControl('Clear Highlight', () => BasicMolStarWrapper.interactivity.clearHighlight());
106
+
107
+ addHeader('Tests');
108
+
109
+ addControl('Static Superposition', () => BasicMolStarWrapper.tests.staticSuperposition());
110
+ addControl('Dynamic Superposition', () => BasicMolStarWrapper.tests.dynamicSuperposition());
111
+ addControl('Validation Tooltip', () => BasicMolStarWrapper.tests.toggleValidationTooltip());
112
+
113
+ addControl('Show Toasts', () => BasicMolStarWrapper.tests.showToasts());
114
+ addControl('Hide Toasts', () => BasicMolStarWrapper.tests.hideToasts());
115
+
116
+ ////////////////////////////////////////////////////////
117
+
118
+ function addControl(label, action) {
119
+ var btn = document.createElement('button');
120
+ btn.onclick = action;
121
+ btn.innerText = label;
122
+ $('controls').appendChild(btn);
123
+ }
124
+
125
+ function addSeparator() {
126
+ var hr = document.createElement('hr');
127
+ $('controls').appendChild(hr);
128
+ }
129
+
130
+ function addHeader(header) {
131
+ var h = document.createElement('h3');
132
+ h.innerText = header;
133
+ $('controls').appendChild(h);
134
+ }
135
+ </script>
136
+ </body>
137
137
  </html>
@@ -23,13 +23,13 @@ export function buildStaticSuperposition(plugin, src) {
23
23
  case 1:
24
24
  if (!(_i < src_1.length)) return [3 /*break*/, 7];
25
25
  s = src_1[_i];
26
- return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/" + s.pdbId + "_updated.cif", 'mmcif')];
26
+ return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/".concat(s.pdbId, "_updated.cif"), 'mmcif')];
27
27
  case 2:
28
28
  structure = (_a.sent()).structure;
29
29
  return [4 /*yield*/, transform(plugin, structure, s.matrix)];
30
30
  case 3:
31
31
  _a.sent();
32
- return [4 /*yield*/, plugin.builders.structure.tryCreateComponentFromExpression(structure, chainSelection(s.auth_asym_id), "Chain " + s.auth_asym_id)];
32
+ return [4 /*yield*/, plugin.builders.structure.tryCreateComponentFromExpression(structure, chainSelection(s.auth_asym_id), "Chain ".concat(s.auth_asym_id))];
33
33
  case 4:
34
34
  chain = _a.sent();
35
35
  if (!chain) return [3 /*break*/, 6];
@@ -78,7 +78,7 @@ export function dynamicSuperpositionTest(plugin, src, comp_id) {
78
78
  case 1:
79
79
  if (!(_i < src_2.length)) return [3 /*break*/, 4];
80
80
  s = src_2[_i];
81
- return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/" + s + "_updated.cif", 'mmcif')];
81
+ return [4 /*yield*/, loadStructure(plugin, "https://www.ebi.ac.uk/pdbe/static/entry/".concat(s, "_updated.cif"), 'mmcif')];
82
82
  case 2:
83
83
  _a.sent();
84
84
  _a.label = 3;
@@ -1 +1 @@
1
- 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1
+ {"version":3,"file":"superposition.js","sourceRoot":"","sources":["../../../src/examples/basic-wrapper/superposition.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,+BAA+B,CAAC;AACrD,OAAO,EAAE,YAAY,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC;AAC7E,OAAO,EAAE,SAAS,EAAE,MAAM,wDAAwD,CAAC;AAGnF,OAAO,EAAE,gBAAgB,IAAI,EAAE,EAAE,MAAM,mCAAmC,CAAC;AAE3E,OAAO,EAAE,OAAO,EAAE,MAAM,yCAAyC,CAAC;AAGlE,OAAO,EAAE,eAAe,EAAE,MAAM,mCAAmC,CAAC;AACpE,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAC;AAQ9C,MAAM,UAAU,wBAAwB,CAAC,MAAqB,EAAE,GAA2B;IAA3F,iBASC;IARG,OAAO,MAAM,CAAC,eAAe,CAAC;;;;;0BACP,EAAH,WAAG;;;yBAAH,CAAA,iBAAG,CAAA;oBAAR,CAAC;oBACc,qBAAM,aAAa,CAAC,MAAM,EAAE,kDAA2C,CAAC,CAAC,KAAK,iBAAc,EAAE,OAAO,CAAC,EAAA;;oBAApH,SAAS,GAAK,CAAA,SAAsG,CAAA,UAA3G;oBACjB,qBAAM,SAAS,CAAC,MAAM,EAAE,SAAS,EAAE,CAAC,CAAC,MAAM,CAAC,EAAA;;oBAA5C,SAA4C,CAAC;oBAC/B,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,gCAAgC,CAAC,SAAS,EAAE,cAAc,CAAC,CAAC,CAAC,YAAY,CAAC,EAAE,gBAAS,CAAC,CAAC,YAAY,CAAE,CAAC,EAAA;;oBAA9I,KAAK,GAAG,SAAsI;yBAChJ,KAAK,EAAL,wBAAK;oBAAE,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,cAAc,CAAC,iBAAiB,CAAC,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC,EAAA;;oBAA5F,SAA4F,CAAC;;;oBAJ5F,IAAG,CAAA;;;;;SAMtB,CAAC,CAAC;AACP,CAAC;AAED,MAAM,CAAC,IAAM,2BAA2B,GAA2B;IAC/D;QACI,KAAK,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,CAAC,QAAQ,EAAE;KAC5D;IACD;QACI,KAAK,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC;YAClD,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,OAAO,CAAC;YAC/B,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,CAAC;YAC9B,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,CAAC,MAAM,CAAC;YAChC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SAAC,CAAC;KACrB;IACD;QACI,KAAK,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC;YAClD,CAAC,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,CAAC,MAAM,CAAC;YAChC,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,MAAM,CAAC;YAC/B,CAAC,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC;YAChC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;SAAC,CAAC;KACrB;CACJ,CAAC;AAEF,MAAM,UAAU,wBAAwB,CAAC,MAAqB,EAAE,GAAa,EAAE,OAAe;IAA9F,iBAiCC;IAhCG,OAAO,MAAM,CAAC,eAAe,CAAC;;;;;0BACP,EAAH,WAAG;;;yBAAH,CAAA,iBAAG,CAAA;oBAAR,CAAC;oBACR,qBAAM,aAAa,CAAC,MAAM,EAAE,kDAA2C,CAAC,iBAAc,EAAE,OAAO,CAAC,EAAA;;oBAAhG,SAAgG,CAAC;;;oBADrF,IAAG,CAAA;;;oBAIb,KAAK,GAAG,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC;wBACjC,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC;4BAC3B,cAAc,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,cAAc,CAAC,aAAa,EAAE,EAAE,OAAO,CAAC,CAAC;4BAChG,UAAU,EAAE,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,cAAc,CAAC,UAAU,EAAE;yBACjE,CAAC;qBACL,CAAC,CAAC;oBAEG,IAAI,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,CAAC;wBACrC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,mBAAmB,CAAC;4BACtC,CAAC,EAAE,KAAK;4BACR,MAAM,EAAE,CAAC;yBACZ,CAAC;wBACF,EAAE,EAAE,KAAK;qBACZ,CAAC,CAAC;oBAEG,KAAK,GAAG,OAAO,CAAqB,KAAK,CAAC,CAAC;oBAC3C,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,SAAS,CAAC,OAAO,CAAC,UAAU,CAAC;oBAC5D,UAAU,GAAG,EAAE,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,kBAAkB,CAAC,sBAAsB,CAAC,KAAK,CAAC,IAAI,YAAY,CAAC,CAAC,CAAC,IAAI,CAAC,GAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAApF,CAAoF,CAAC,CAAC;oBAE/G,UAAU,GAAG,SAAS,CAAC,UAAU,CAAC,CAAC;oBAEzC,qBAAM,UAAU,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,EAAA;;oBAAjD,SAAiD,CAAC;oBACzC,CAAC,GAAG,CAAC;;;yBAAE,CAAA,CAAC,GAAG,UAAU,CAAC,MAAM,CAAA;oBACjC,qBAAM,SAAS,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,UAAU,CAAC,EAAA;;oBAAjE,SAAiE,CAAC;oBAClE,qBAAM,UAAU,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,EAAA;;oBAAjD,SAAiD,CAAC;;;oBAFf,CAAC,EAAE,CAAA;;;;;SAI7C,CAAC,CAAC;AACP,CAAC;AAED,SAAe,UAAU,CAAC,MAAqB,EAAE,CAAyC,EAAE,KAAiB,EAAE,IAAgB;;;;;wBAC5G,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,gCAAgC,CAAC,CAAC,EAAE,KAAK,EAAE,OAAO,CAAC,EAAA;;oBAA5F,MAAM,GAAG,SAAmF;yBAC9F,MAAM,EAAN,wBAAM;oBAAE,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,cAAc,CAAC,iBAAiB,CAAC,MAAM,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,KAAK,EAAE,cAAc,EAAE,CAAC,EAAA;;oBAA3H,SAA2H,CAAC;;wBAE3H,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,gCAAgC,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,EAAA;;oBAAxF,IAAI,GAAG,SAAiF;yBAC1F,IAAI,EAAJ,wBAAI;oBAAE,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,cAAc,CAAC,iBAAiB,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,EAAE,SAAS,EAAE,UAAU,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,CAAC,EAAA;;oBAAlK,SAAkK,CAAC;;;;;;CAChL;AAED,SAAe,aAAa,CAAC,MAAqB,EAAE,GAAW,EAAE,MAA+B,EAAE,UAAmB;;;;;wBACpG,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,EAAA;;oBAAnE,IAAI,GAAG,SAA4D;oBACtD,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,eAAe,CAAC,IAAI,EAAE,MAAM,CAAC,EAAA;;oBAA1E,UAAU,GAAG,SAA6D;oBAClE,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,WAAW,CAAC,UAAU,CAAC,EAAA;;oBAA/D,KAAK,GAAG,SAAuD;oBACnD,qBAAM,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,eAAe,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,EAAA;;oBAA1I,SAAS,GAAG,SAA8H;oBAEhJ,sBAAO,EAAE,IAAI,MAAA,EAAE,UAAU,YAAA,EAAE,KAAK,OAAA,EAAE,SAAS,WAAA,EAAE,EAAC;;;;CA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@@ -28,8 +28,8 @@ export function createMapping(allData) {
28
28
  function writeDomain(enc, domain) {
29
29
  if (!domain)
30
30
  return;
31
- enc.writeCategory({ name: "pdbx_" + domain.name + "_domain_annotation", instance: function () { return CifWriter.Category.ofTable(domain.domains); } });
32
- enc.writeCategory({ name: "pdbx_" + domain.name + "_domain_mapping", instance: function () { return CifWriter.Category.ofTable(domain.mappings); } });
31
+ enc.writeCategory({ name: "pdbx_".concat(domain.name, "_domain_annotation"), instance: function () { return CifWriter.Category.ofTable(domain.domains); } });
32
+ enc.writeCategory({ name: "pdbx_".concat(domain.name, "_domain_mapping"), instance: function () { return CifWriter.Category.ofTable(domain.mappings); } });
33
33
  }
34
34
  function getSources(data) {
35
35
  var rows = [];
@@ -1 +1 @@
1
- {"version":3,"file":"mapping.js","sourceRoot":"","sources":["../../../src/examples/domain-annotation-server/mapping.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AAC1C,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,KAAK,CAAC,MAAM,WAAW,CAAC;AAC/B,wDAAwD;AAExD,MAAM,UAAU,aAAa,CAAC,OAAY;IACtC,IAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAClC,IAAM,GAAG,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IACtC,GAAG,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAE5B,IAAI,CAAC,IAAI,CAAC,MAAM;QAAE,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;IAEvC,IAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAE9B,IAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IACjC,IAAI,CAAC,OAAO,CAAC,SAAS;QAAE,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;IAE7C,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,gCAAgC,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,EAAnC,CAAmC,EAAE,CAAC,CAAC;IAEnH,KAAkB,UAAyB,EAAzB,KAAA,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAzB,cAAyB,EAAzB,IAAyB,EAAE;QAAxC,IAAM,GAAG,SAAA;QACV,WAAW,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,EAAG,CAAC,CAAC,UAAkB,CAAC,GAAG,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;KACtE;IACD,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;AACzB,CAAC;AASD,SAAS,WAAW,CAAC,GAAsB,EAAE,MAAoC;IAC7E,IAAI,CAAC,MAAM;QAAE,OAAO;IACpB,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,UAAQ,MAAM,CAAC,IAAI,uBAAoB,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,CAAC,EAA1C,CAA0C,EAAE,CAAC,CAAC;IACjI,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,UAAQ,MAAM,CAAC,IAAI,oBAAiB,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,EAA3C,CAA2C,EAAE,CAAC,CAAC;AACnI,CAAC;AAED,SAAS,UAAU,CAAC,IAAS;IACzB,IAAM,IAAI,GAA2B,EAAE,CAAC;IACxC,KAAmB,UAAyB,EAAzB,KAAA,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAzB,cAAyB,EAAzB,IAAyB,EAAE;QAAzC,IAAM,MAAI,SAAA;QACX,IAAI,CAAC,IAAI,CAAC,MAAI,CAAC;YAAE,SAAS;QAC1B,IAAM,GAAG,GAAyB,EAAE,EAAE,EAAE,MAAI,EAAE,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,MAAI,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QACtF,IAAI,GAAG,CAAC,KAAK,GAAG,CAAC;YAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;KACrC;IACD,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;AACzC,CAAC;AAED,SAAS,WAAW,CAAC,OAAe,EAAE,QAAgB,EAAE,QAAa;IACjE,IAAM,IAAI,GAAiB,EAAE,CAAC;IAE9B,IAAM,CAAC,GAAG,UAAC,CAAM,IAAK,OAAA,CAAC,KAAK,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,EAAvB,CAAuB,CAAC;IAE9C,KAAoB,UAAQ,EAAR,qBAAQ,EAAR,sBAAQ,EAAR,IAAQ,EAAE;QAAzB,IAAM,KAAK,iBAAA;QACZ,IAAI,KAAK,CAAC,KAAK,IAAI,KAAK,CAAC,GAAG,EAAE;YAC1B,IAAI,CAAC,IAAI,CAAC;gBACN,EAAE,EAAE,OAAO,EAAE;gBACb,QAAQ,UAAA;gBACR,eAAe,EAAE,EAAE,GAAG,KAAK,CAAC,SAAS;gBACrC,aAAa,EAAE,KAAK,CAAC,cAAc;gBACnC,YAAY,EAAE,KAAK,CAAC,QAAQ;gBAC5B,gBAAgB,EAAE,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC/C,eAAe,EAAE,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,qBAAqB,CAAC;gBACrD,qBAAqB,EAAE,KAAK,CAAC,KAAK,CAAC,qBAAqB;gBACxD,gBAAgB,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;gBAC7C,eAAe,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC;gBACnD,qBAAqB,EAAE,KAAK,CAAC,GAAG,CAAC,qBAAqB;aACzD,CAAC,CAAC;SACN;aAAM;YACH,IAAI,CAAC,IAAI,CAAC;gBACN,EAAE,EAAE,OAAO,EAAE;gBACb,QAAQ,UAAA;gBACR,eAAe,EAAE,EAAE,GAAG,KAAK,CAAC,SAAS;gBACrC,aAAa,EAAE,KAAK,CAAC,cAAc;gBACnC,YAAY,EAAE,KAAK,CAAC,QAAQ;aACxB,CAAC,CAAC;SACb;KACJ;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,SAAS,aAAa,CAAC,EAAU,EAAE,gBAAwB,EAAE,IAAS,EAAE,MAAW;IAC/E,IAAM,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAClC,KAAgB,UAAmB,EAAnB,KAAA,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,EAAnB,cAAmB,EAAnB,IAAmB;QAA9B,IAAM,CAAC,SAAA;QAAyB,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;KAAA;IACxD,kBAAS,EAAE,IAAA,EAAE,gBAAgB,kBAAA,EAAE,UAAU,EAAE,IAAI,CAAC,UAAU,IAAK,KAAK,EAAG;AAC3E,CAAC;AAED,SAAS,SAAS,CAAC,IAAY,EAAE,MAAW,EAAE,OAAY;IACtD,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC;IAElC,IAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE3B,IAAM,OAAO,GAAU,EAAE,CAAC;IAC1B,IAAM,QAAQ,GAAiB,EAAE,CAAC;IAElC,IAAI,eAAe,GAAG,CAAC,EAAE,gBAAgB,GAAG,CAAC,CAAC;IAE9C,KAAiB,UAAiB,EAAjB,KAAA,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAjB,cAAiB,EAAjB,IAAiB,EAAE;QAA/B,IAAM,EAAE,SAAA;QACT,IAAM,MAAM,GAAG,IAAI,CAAC,EAAE,CAAC,CAAC;QACxB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,EAAE,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;QAClE,QAAQ,CAAC,IAAI,OAAb,QAAQ,EAAS,WAAW,CAAC,eAAe,EAAE,gBAAgB,EAAE,MAAM,CAAC,QAAQ,CAAC,EAAE;QAClF,eAAe,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;QACtC,gBAAgB,EAAE,CAAC;KACtB;IAED,OAAO,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC;QACxB,IAAI,MAAA;QACJ,OAAO,EAAE,KAAK,CAAC,MAAM,uBAAM,CAAC,CAAC,IAAI,GAAK,MAAM,GAAI,OAAO,CAAC;QACxD,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAY,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC;KACzD,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;AACf,CAAC"}
1
+ {"version":3,"file":"mapping.js","sourceRoot":"","sources":["../../../src/examples/domain-annotation-server/mapping.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AAC1C,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,KAAK,CAAC,MAAM,WAAW,CAAC;AAC/B,wDAAwD;AAExD,MAAM,UAAU,aAAa,CAAC,OAAY;IACtC,IAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAClC,IAAM,GAAG,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IACtC,GAAG,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAE5B,IAAI,CAAC,IAAI,CAAC,MAAM;QAAE,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;IAEvC,IAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IAE9B,IAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IACjC,IAAI,CAAC,OAAO,CAAC,SAAS;QAAE,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;IAE7C,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,gCAAgC,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,OAAO,CAAC,EAAnC,CAAmC,EAAE,CAAC,CAAC;IAEnH,KAAkB,UAAyB,EAAzB,KAAA,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAzB,cAAyB,EAAzB,IAAyB,EAAE;QAAxC,IAAM,GAAG,SAAA;QACV,WAAW,CAAC,GAAG,EAAE,SAAS,CAAC,GAAG,EAAG,CAAC,CAAC,UAAkB,CAAC,GAAG,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;KACtE;IACD,OAAO,GAAG,CAAC,OAAO,EAAE,CAAC;AACzB,CAAC;AASD,SAAS,WAAW,CAAC,GAAsB,EAAE,MAAoC;IAC7E,IAAI,CAAC,MAAM;QAAE,OAAO;IACpB,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,eAAQ,MAAM,CAAC,IAAI,uBAAoB,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,CAAC,EAA1C,CAA0C,EAAE,CAAC,CAAC;IACjI,GAAG,CAAC,aAAa,CAAC,EAAE,IAAI,EAAE,eAAQ,MAAM,CAAC,IAAI,oBAAiB,EAAE,QAAQ,EAAE,cAAM,OAAA,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,EAA3C,CAA2C,EAAE,CAAC,CAAC;AACnI,CAAC;AAED,SAAS,UAAU,CAAC,IAAS;IACzB,IAAM,IAAI,GAA2B,EAAE,CAAC;IACxC,KAAmB,UAAyB,EAAzB,KAAA,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,EAAzB,cAAyB,EAAzB,IAAyB,EAAE;QAAzC,IAAM,MAAI,SAAA;QACX,IAAI,CAAC,IAAI,CAAC,MAAI,CAAC;YAAE,SAAS;QAC1B,IAAM,GAAG,GAAyB,EAAE,EAAE,EAAE,MAAI,EAAE,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,MAAI,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QACtF,IAAI,GAAG,CAAC,KAAK,GAAG,CAAC;YAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;KACrC;IACD,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;AACzC,CAAC;AAED,SAAS,WAAW,CAAC,OAAe,EAAE,QAAgB,EAAE,QAAa;IACjE,IAAM,IAAI,GAAiB,EAAE,CAAC;IAE9B,IAAM,CAAC,GAAG,UAAC,CAAM,IAAK,OAAA,CAAC,KAAK,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,EAAvB,CAAuB,CAAC;IAE9C,KAAoB,UAAQ,EAAR,qBAAQ,EAAR,sBAAQ,EAAR,IAAQ,EAAE;QAAzB,IAAM,KAAK,iBAAA;QACZ,IAAI,KAAK,CAAC,KAAK,IAAI,KAAK,CAAC,GAAG,EAAE;YAC1B,IAAI,CAAC,IAAI,CAAC;gBACN,EAAE,EAAE,OAAO,EAAE;gBACb,QAAQ,UAAA;gBACR,eAAe,EAAE,EAAE,GAAG,KAAK,CAAC,SAAS;gBACrC,aAAa,EAAE,KAAK,CAAC,cAAc;gBACnC,YAAY,EAAE,KAAK,CAAC,QAAQ;gBAC5B,gBAAgB,EAAE,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC/C,eAAe,EAAE,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,qBAAqB,CAAC;gBACrD,qBAAqB,EAAE,KAAK,CAAC,KAAK,CAAC,qBAAqB;gBACxD,gBAAgB,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;gBAC7C,eAAe,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC;gBACnD,qBAAqB,EAAE,KAAK,CAAC,GAAG,CAAC,qBAAqB;aACzD,CAAC,CAAC;SACN;aAAM;YACH,IAAI,CAAC,IAAI,CAAC;gBACN,EAAE,EAAE,OAAO,EAAE;gBACb,QAAQ,UAAA;gBACR,eAAe,EAAE,EAAE,GAAG,KAAK,CAAC,SAAS;gBACrC,aAAa,EAAE,KAAK,CAAC,cAAc;gBACnC,YAAY,EAAE,KAAK,CAAC,QAAQ;aACxB,CAAC,CAAC;SACb;KACJ;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,SAAS,aAAa,CAAC,EAAU,EAAE,gBAAwB,EAAE,IAAS,EAAE,MAAW;IAC/E,IAAM,KAAK,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAClC,KAAgB,UAAmB,EAAnB,KAAA,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,EAAnB,cAAmB,EAAnB,IAAmB;QAA9B,IAAM,CAAC,SAAA;QAAyB,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;KAAA;IACxD,kBAAS,EAAE,IAAA,EAAE,gBAAgB,kBAAA,EAAE,UAAU,EAAE,IAAI,CAAC,UAAU,IAAK,KAAK,EAAG;AAC3E,CAAC;AAED,SAAS,SAAS,CAAC,IAAY,EAAE,MAAW,EAAE,OAAY;IACtD,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC;IAElC,IAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAE3B,IAAM,OAAO,GAAU,EAAE,CAAC;IAC1B,IAAM,QAAQ,GAAiB,EAAE,CAAC;IAElC,IAAI,eAAe,GAAG,CAAC,EAAE,gBAAgB,GAAG,CAAC,CAAC;IAE9C,KAAiB,UAAiB,EAAjB,KAAA,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAjB,cAAiB,EAAjB,IAAiB,EAAE;QAA/B,IAAM,EAAE,SAAA;QACT,IAAM,MAAM,GAAG,IAAI,CAAC,EAAE,CAAC,CAAC;QACxB,OAAO,CAAC,IAAI,CAAC,aAAa,CAAC,EAAE,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;QAClE,QAAQ,CAAC,IAAI,OAAb,QAAQ,EAAS,WAAW,CAAC,eAAe,EAAE,gBAAgB,EAAE,MAAM,CAAC,QAAQ,CAAC,EAAE;QAClF,eAAe,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;QACtC,gBAAgB,EAAE,CAAC;KACtB;IAED,OAAO,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC;QACxB,IAAI,MAAA;QACJ,OAAO,EAAE,KAAK,CAAC,MAAM,uBAAM,CAAC,CAAC,IAAI,GAAK,MAAM,GAAI,OAAO,CAAC;QACxD,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAY,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC;KACzD,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;AACf,CAAC"}
@@ -12,7 +12,7 @@ function getMappings(id) {
12
12
  var data, json;
13
13
  return __generator(this, function (_a) {
14
14
  switch (_a.label) {
15
- case 0: return [4 /*yield*/, fetch("https://www.ebi.ac.uk/pdbe/api/mappings/" + id)];
15
+ case 0: return [4 /*yield*/, fetch("https://www.ebi.ac.uk/pdbe/api/mappings/".concat(id))];
16
16
  case 1:
17
17
  data = _a.sent();
18
18
  return [4 /*yield*/, data.json()];
@@ -27,7 +27,7 @@ function getMappings(id) {
27
27
  var PORT = process.env.port || 1338;
28
28
  var app = express();
29
29
  var PREFIX = '/';
30
- app.get(PREFIX + "/:id", function (req, res) { return __awaiter(void 0, void 0, void 0, function () {
30
+ app.get("".concat(PREFIX, "/:id"), function (req, res) { return __awaiter(void 0, void 0, void 0, function () {
31
31
  var mapping, _a;
32
32
  return __generator(this, function (_b) {
33
33
  switch (_b.label) {
@@ -54,7 +54,7 @@ app.get(PREFIX + "/:id", function (req, res) { return __awaiter(void 0, void 0,
54
54
  }
55
55
  });
56
56
  }); });
57
- app.get("" + PREFIX, function (req, res) {
57
+ app.get("".concat(PREFIX), function (req, res) {
58
58
  res.writeHead(200, { 'Content-Type': 'text/plain; charset=utf-8' });
59
59
  res.end('Usage: /pdb_id, e.g. /1tqn');
60
60
  });
@@ -1 +1 @@
1
- {"version":3,"file":"server.js","sourceRoot":"","sources":["../../../src/examples/domain-annotation-server/server.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,OAAO,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,MAAM,YAAY,CAAC;AAC/B,OAAO,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAE1C,SAAe,WAAW,CAAC,EAAU;;;;;wBACpB,qBAAM,KAAK,CAAC,6CAA2C,EAAI,CAAC,EAAA;;oBAAnE,IAAI,GAAG,SAA4D;oBAC5D,qBAAM,IAAI,CAAC,IAAI,EAAE,EAAA;;oBAAxB,IAAI,GAAG,SAAiB;oBAC9B,sBAAO,aAAa,CAAC,IAAI,CAAC,EAAC;;;;CAC9B;AAAA,CAAC;AAGF,IAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,IAAI,CAAC;AAEtC,IAAM,GAAG,GAAG,OAAO,EAAE,CAAC;AAEtB,IAAM,MAAM,GAAG,GAAG,CAAC;AAEnB,GAAG,CAAC,GAAG,CAAI,MAAM,SAAM,EAAE,UAAO,GAAG,EAAE,GAAG;;;;;;gBAEhC,OAAO,CAAC,GAAG,CAAC,aAAa,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;gBAC3B,qBAAM,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,EAAA;;gBAA1C,OAAO,GAAG,SAAgC;gBAChD,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE;oBACf,cAAc,EAAE,2BAA2B;oBAC3C,6BAA6B,EAAE,GAAG;oBAClC,8BAA8B,EAAE,kBAAkB;iBACrD,CAAC,CAAC;gBACH,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;;;;gBAEjB,OAAO,CAAC,GAAG,CAAC,SAAS,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;gBACvC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,6BAA6B,EAAE,GAAG,EAAE,8BAA8B,EAAE,kBAAkB,EAAE,CAAC,CAAC;gBAC/G,GAAG,CAAC,GAAG,EAAE,CAAC;;;;;KAEjB,CAAC,CAAC;AAEH,GAAG,CAAC,GAAG,CAAC,KAAG,MAAQ,EAAE,UAAC,GAAG,EAAE,GAAG;IAC1B,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,cAAc,EAAE,2BAA2B,EAAE,CAAC,CAAC;IACpE,GAAG,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC;AAC1C,CAAC,CAAC,CAAC;AAEH,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;AAEjB,OAAO,CAAC,GAAG,CAAC,kBAAkB,GAAG,IAAI,CAAC,CAAC"}
1
+ {"version":3,"file":"server.js","sourceRoot":"","sources":["../../../src/examples/domain-annotation-server/server.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,OAAO,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,MAAM,YAAY,CAAC;AAC/B,OAAO,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAE1C,SAAe,WAAW,CAAC,EAAU;;;;;wBACpB,qBAAM,KAAK,CAAC,kDAA2C,EAAE,CAAE,CAAC,EAAA;;oBAAnE,IAAI,GAAG,SAA4D;oBAC5D,qBAAM,IAAI,CAAC,IAAI,EAAE,EAAA;;oBAAxB,IAAI,GAAG,SAAiB;oBAC9B,sBAAO,aAAa,CAAC,IAAI,CAAC,EAAC;;;;CAC9B;AAAA,CAAC;AAGF,IAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,IAAI,CAAC;AAEtC,IAAM,GAAG,GAAG,OAAO,EAAE,CAAC;AAEtB,IAAM,MAAM,GAAG,GAAG,CAAC;AAEnB,GAAG,CAAC,GAAG,CAAC,UAAG,MAAM,SAAM,EAAE,UAAO,GAAG,EAAE,GAAG;;;;;;gBAEhC,OAAO,CAAC,GAAG,CAAC,aAAa,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;gBAC3B,qBAAM,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,EAAA;;gBAA1C,OAAO,GAAG,SAAgC;gBAChD,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE;oBACf,cAAc,EAAE,2BAA2B;oBAC3C,6BAA6B,EAAE,GAAG;oBAClC,8BAA8B,EAAE,kBAAkB;iBACrD,CAAC,CAAC;gBACH,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;;;;gBAEjB,OAAO,CAAC,GAAG,CAAC,SAAS,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;gBACvC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,6BAA6B,EAAE,GAAG,EAAE,8BAA8B,EAAE,kBAAkB,EAAE,CAAC,CAAC;gBAC/G,GAAG,CAAC,GAAG,EAAE,CAAC;;;;;KAEjB,CAAC,CAAC;AAEH,GAAG,CAAC,GAAG,CAAC,UAAG,MAAM,CAAE,EAAE,UAAC,GAAG,EAAE,GAAG;IAC1B,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,cAAc,EAAE,2BAA2B,EAAE,CAAC,CAAC;IACpE,GAAG,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC;AAC1C,CAAC,CAAC,CAAC;AAEH,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;AAEjB,OAAO,CAAC,GAAG,CAAC,kBAAkB,GAAG,IAAI,CAAC,CAAC"}
@@ -1,87 +1,87 @@
1
- <!DOCTYPE html>
2
- <html lang="en">
3
- <head>
4
- <meta charset="utf-8" />
5
- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
- <title>Mol* Lighting Demo</title>
7
- <style>
8
- * {
9
- margin: 0;
10
- padding: 0;
11
- box-sizing: border-box;
12
- }
13
- #app {
14
- position: absolute;
15
- width: 100%;
16
- height: 100%;
17
- }
18
-
19
- #controls {
20
- position: absolute;
21
- width: 150px;
22
- bottom: 100px;
23
- right: 50px;
24
- z-index: 10;
25
- font-family: sans-serif;
26
- font-size: smaller;
27
- }
28
-
29
- #controls > button {
30
- display: block;
31
- width: 100%;
32
- text-align: left;
33
- margin: 5px 0px;
34
- }
35
-
36
- #controls > input, #controls > select {
37
- width: 100%;
38
- display: block;
39
- }
40
- </style>
41
- <link rel="stylesheet" type="text/css" href="molstar.css" />
42
- <script type="text/javascript" src="./index.js"></script>
43
- </head>
44
- <body>
45
- <div id='controls'></div>
46
- <div id="app"></div>
47
- <script>
48
- LightingDemo.init('app')
49
- LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3)
50
-
51
- addHeader('Example PDB IDs');
52
- addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
53
- addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
54
- addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
55
- addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
56
-
57
- addSeparator()
58
-
59
- addHeader('Lighting Presets');
60
- addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
61
- addControl('Standard', () => LightingDemo.setPreset('standard'));
62
- addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
63
-
64
- ////////////////////////////////////////////////////////
65
-
66
- function $(id) { return document.getElementById(id); }
67
-
68
- function addControl(label, action) {
69
- var btn = document.createElement('button');
70
- btn.onclick = action;
71
- btn.innerText = label;
72
- $('controls').appendChild(btn);
73
- }
74
-
75
- function addSeparator() {
76
- var hr = document.createElement('br');
77
- $('controls').appendChild(hr);
78
- }
79
-
80
- function addHeader(header) {
81
- var h = document.createElement('h3');
82
- h.innerText = header;
83
- $('controls').appendChild(h);
84
- }
85
- </script>
86
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <title>Mol* Lighting Demo</title>
7
+ <style>
8
+ * {
9
+ margin: 0;
10
+ padding: 0;
11
+ box-sizing: border-box;
12
+ }
13
+ #app {
14
+ position: absolute;
15
+ width: 100%;
16
+ height: 100%;
17
+ }
18
+
19
+ #controls {
20
+ position: absolute;
21
+ width: 150px;
22
+ bottom: 100px;
23
+ right: 50px;
24
+ z-index: 10;
25
+ font-family: sans-serif;
26
+ font-size: smaller;
27
+ }
28
+
29
+ #controls > button {
30
+ display: block;
31
+ width: 100%;
32
+ text-align: left;
33
+ margin: 5px 0px;
34
+ }
35
+
36
+ #controls > input, #controls > select {
37
+ width: 100%;
38
+ display: block;
39
+ }
40
+ </style>
41
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
42
+ <script type="text/javascript" src="./index.js"></script>
43
+ </head>
44
+ <body>
45
+ <div id='controls'></div>
46
+ <div id="app"></div>
47
+ <script>
48
+ LightingDemo.init('app')
49
+ LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3)
50
+
51
+ addHeader('Example PDB IDs');
52
+ addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
53
+ addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
54
+ addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
55
+ addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
56
+
57
+ addSeparator()
58
+
59
+ addHeader('Lighting Presets');
60
+ addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
61
+ addControl('Standard', () => LightingDemo.setPreset('standard'));
62
+ addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
63
+
64
+ ////////////////////////////////////////////////////////
65
+
66
+ function $(id) { return document.getElementById(id); }
67
+
68
+ function addControl(label, action) {
69
+ var btn = document.createElement('button');
70
+ btn.onclick = action;
71
+ btn.innerText = label;
72
+ $('controls').appendChild(btn);
73
+ }
74
+
75
+ function addSeparator() {
76
+ var hr = document.createElement('br');
77
+ $('controls').appendChild(hr);
78
+ }
79
+
80
+ function addHeader(header) {
81
+ var h = document.createElement('h3');
82
+ h.innerText = header;
83
+ $('controls').appendChild(h);
84
+ }
85
+ </script>
86
+ </body>
87
87
  </html>
@@ -36,7 +36,7 @@ export var EvolutionaryConservation = CustomElementProperty.create({
36
36
  switch (_d.label) {
37
37
  case 0:
38
38
  id = model.entryId.toLowerCase();
39
- url = Asset.getUrlAsset(ctx.assetManager, "https://proteopedia.org/cgi-bin/cnsrf?" + id);
39
+ url = Asset.getUrlAsset(ctx.assetManager, "https://proteopedia.org/cgi-bin/cnsrf?".concat(id));
40
40
  return [4 /*yield*/, ctx.assetManager.resolve(url, 'json').runInContext(ctx.runtime)];
41
41
  case 1:
42
42
  json = _d.sent();
@@ -55,7 +55,7 @@ export var EvolutionaryConservation = CustomElementProperty.create({
55
55
  chainIndex = model.atomicHierarchy.chainAtomSegments.index;
56
56
  for (rI = 0; rI < residueCount; rI++) {
57
57
  cI = chainIndex[residueOffsets[rI]];
58
- key = model.atomicHierarchy.chains.auth_asym_id.value(cI) + " " + model.atomicHierarchy.residues.auth_seq_id.value(rI);
58
+ key = "".concat(model.atomicHierarchy.chains.auth_asym_id.value(cI), " ").concat(model.atomicHierarchy.residues.auth_seq_id.value(rI));
59
59
  if (!conservationMap.has(key))
60
60
  continue;
61
61
  ann = conservationMap.get(key);
@@ -79,7 +79,7 @@ export var EvolutionaryConservation = CustomElementProperty.create({
79
79
  getLabel: function (e) {
80
80
  if (e === 10)
81
81
  return "Evolutionary Conservation: Insufficient Data";
82
- return e ? "Evolutionary Conservation: " + e : void 0;
82
+ return e ? "Evolutionary Conservation: ".concat(e) : void 0;
83
83
  }
84
84
  });
85
85
  //# sourceMappingURL=annotation.js.map
@@ -1 +1 @@
1
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1
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@@ -19,7 +19,7 @@ export var ModelInfo;
19
19
  case 1:
20
20
  _a.trys.push([1, 3, , 4]);
21
21
  id = model.entryId.toLowerCase();
22
- return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/" + id }))];
22
+ return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/".concat(id) }))];
23
23
  case 2:
24
24
  src = _a.sent();
25
25
  json = JSON.parse(src);