molstar 4.0.1 → 4.2.0

package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -94,11 +94,11 @@ async function createPetworldHierarchy(plugin, trajectory) {
     const groupParams = (0, state_1.getMesoscaleGroupParams)(graphicsMode);
     const group = await state.build()
         .toRoot()
-        .applyOrUpdateTagged('group:ent:', state_1.MesoscaleGroup, { ...groupParams, root: true, index: -1, tag: `ent:`, label: 'entity', color: { type: 'generate', value: names_1.ColorNames.white, variability: 20, shift: 0, lightness: 0, alpha: 1 } }, { tags: 'group:ent:', state: { isCollapsed: false, isHidden: groupParams.hidden } })
+        .applyOrUpdateTagged('group:ent:', state_1.MesoscaleGroup, { ...groupParams, root: true, index: -1, tag: `ent:`, label: 'entity', color: { type: 'generate', value: names_1.ColorNames.white, variability: 20, shift: 0, lightness: 0, alpha: 1, emissive: 0 } }, { tags: 'group:ent:', state: { isCollapsed: false, isHidden: groupParams.hidden } })
         .commit({ revertOnError: true });
     await state.build()
         .to(group)
-        .applyOrUpdateTagged(`group:ent:mem`, state_1.MesoscaleGroup, { ...groupParams, index: undefined, tag: `ent:mem`, label: 'Membrane', color: { type: 'uniform', value: names_1.ColorNames.lightgrey, variability: 20, shift: 0, lightness: 0, alpha: 1 } }, { tags: `ent:`, state: { isCollapsed: true, isHidden: groupParams.hidden } })
+        .applyOrUpdateTagged(`group:ent:mem`, state_1.MesoscaleGroup, { ...groupParams, index: undefined, tag: `ent:mem`, label: 'Membrane', color: { type: 'uniform', value: names_1.ColorNames.lightgrey, variability: 20, shift: 0, lightness: 0, alpha: 1, emissive: 0 } }, { tags: `ent:`, state: { isCollapsed: true, isHidden: groupParams.hidden } })
         .commit();
     const colors = (0, state_1.getDistinctBaseColors)(other.length, 0);
     await state.transaction(async () => {

package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2023-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -24,6 +24,7 @@ export declare const ColorParams: {
     shift: PD.Numeric;
     lightness: PD.Numeric;
     alpha: PD.Numeric;
+    emissive: PD.Numeric;
 };
 export type ColorProps = PD.Values<typeof ColorParams>;
 export declare const ColorValueParam: PD.Color;
@@ -34,6 +35,7 @@ export declare const RootParams: {
     shift: PD.Numeric;
     lightness: PD.Numeric;
     alpha: PD.Numeric;
+    emissive: PD.Numeric;
 };
 export declare const LightnessParams: {
     lightness: PD.Numeric;
@@ -42,6 +44,9 @@ export declare const DimLightness = 6;
 export declare const OpacityParams: {
     alpha: PD.Numeric;
 };
+export declare const EmissiveParams: {
+    emissive: PD.Numeric;
+};
 export declare const PatternParams: {
     frequency: PD.Numeric;
     amplitude: PD.Numeric;
@@ -122,9 +127,11 @@ export declare const MesoscaleGroupParams: {
         shift: number;
         lightness: number;
         alpha: number;
+        emissive: number;
     }>>;
     lightness: PD.Numeric;
     alpha: PD.Numeric;
+    emissive: PD.Numeric;
     lod: PD.Group<PD.Normalize<{
         lodLevels: PD.Normalize<{
             minDistance: number;
@@ -162,18 +169,18 @@ declare const MesoscaleGroupObject_base: {
         label: string;
         description?: string | undefined;
     } | undefined): {
-        id: import("../../../mol-util/uuid").UUID;
+        id: import("../../../mol-util").UUID;
         type: PSO.TypeInfo;
         label: string;
         description?: string | undefined;
         data: {};
     };
     type: PSO.TypeInfo;
-    is(obj?: import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>> | undefined): obj is import("../../../mol-state/object").StateObject<{}, PSO.TypeInfo>;
+    is(obj?: import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>> | undefined): obj is import("../../../mol-state").StateObject<{}, PSO.TypeInfo>;
 };
 export declare class MesoscaleGroupObject extends MesoscaleGroupObject_base {
 }
-export declare const MesoscaleGroup: import("../../../mol-state/transformer").StateTransformer<PSO.Root, MesoscaleGroupObject, PD.Normalize<{
+export declare const MesoscaleGroup: import("../../../mol-state").StateTransformer<PSO.Root, MesoscaleGroupObject, PD.Normalize<{
     root: boolean;
     index: number;
     tag: string;
@@ -186,9 +193,11 @@ export declare const MesoscaleGroup: import("../../../mol-state/transformer").St
         shift: any;
         lightness: any;
         alpha: any;
+        emissive: any;
     }>;
     lightness: number;
     alpha: number;
+    emissive: number;
     lod: PD.Normalize<{
         lodLevels: any;
         cellSize: any;
@@ -235,7 +244,7 @@ declare const MesoscaleStateObject_base: {
         label: string;
         description?: string | undefined;
     } | undefined): {
-        id: import("../../../mol-util/uuid").UUID;
+        id: import("../../../mol-util").UUID;
         type: PSO.TypeInfo;
         label: string;
         description?: string | undefined;
@@ -247,7 +256,7 @@ declare const MesoscaleStateObject_base: {
         }>;
     };
     type: PSO.TypeInfo;
-    is(obj?: import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>> | undefined): obj is import("../../../mol-state/object").StateObject<PD.Values<{
+    is(obj?: import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>> | undefined): obj is import("../../../mol-state").StateObject<PD.Values<{
         filter: PD.Value<string>;
         graphics: PD.Select<GraphicsMode>;
         description: PD.Value<string>;
@@ -267,13 +276,13 @@ declare const MesoscaleState: {
 };
 export declare function getRoots(plugin: PluginContext): StateSelection.CellSeq<StateObjectCell<MesoscaleGroupObject>>;
 export declare function getGroups(plugin: PluginContext, tag?: string): StateSelection.CellSeq<StateObjectCell<MesoscaleGroupObject>>;
-export declare function getAllGroups(plugin: PluginContext, tag?: string): StateObjectCell<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/transform").StateTransform<import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
-export declare function getAllLeafGroups(plugin: PluginContext, tag: string): StateObjectCell<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/transform").StateTransform<import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
+export declare function getAllGroups(plugin: PluginContext, tag?: string): StateObjectCell<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateTransform<import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
+export declare function getAllLeafGroups(plugin: PluginContext, tag: string): StateObjectCell<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateTransform<import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
 type EntityCells = StateSelection.CellSeq<StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D>>;
 export declare function getEntities(plugin: PluginContext, tag?: string): EntityCells;
-export declare function getFilteredEntities(plugin: PluginContext, tag: string, filter: string): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
+export declare function getFilteredEntities(plugin: PluginContext, tag: string, filter: string): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
 export declare function getAllEntities(plugin: PluginContext, tag?: string): EntityCells;
-export declare function getAllFilteredEntities(plugin: PluginContext, tag: string, filter: string): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
+export declare function getAllFilteredEntities(plugin: PluginContext, tag: string, filter: string): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
 export declare function getEntityLabel(plugin: PluginContext, cell: StateObjectCell): string;
 export declare function updateColors(plugin: PluginContext, values: PD.Values, tag: string, filter: string): Promise<void>;
 export declare function expandAllGroups(plugin: PluginContext): void;

package/lib/commonjs/apps/mesoscale-explorer/data/state.js

@@ -1,11 +1,11 @@
 "use strict";
 /**
- * Copyright (c) 2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2023-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.expandAllGroups = exports.updateColors = exports.getEntityLabel = exports.getAllFilteredEntities = exports.getAllEntities = exports.getFilteredEntities = exports.getEntities = exports.getAllLeafGroups = exports.getAllGroups = exports.getGroups = exports.getRoots = exports.MesoscaleState = exports.MesoscaleStateObject = exports.MesoscaleStateParams = exports.setGraphicsCanvas3DProps = exports.getGraphicsModeProps = exports.getLodLevels = exports.getMesoscaleGroupParams = exports.MesoscaleGroup = exports.MesoscaleGroupObject = exports.MesoscaleGroupParams = exports.createClipMapping = exports.getClipObjects = exports.SimpleClipParams = exports.LodParams = exports.PatternParams = exports.OpacityParams = exports.DimLightness = exports.LightnessParams = exports.RootParams = exports.ColorValueParam = exports.ColorParams = exports.getDistinctBaseColors = exports.getDistinctGroupColors = void 0;
+exports.expandAllGroups = exports.updateColors = exports.getEntityLabel = exports.getAllFilteredEntities = exports.getAllEntities = exports.getFilteredEntities = exports.getEntities = exports.getAllLeafGroups = exports.getAllGroups = exports.getGroups = exports.getRoots = exports.MesoscaleState = exports.MesoscaleStateObject = exports.MesoscaleStateParams = exports.setGraphicsCanvas3DProps = exports.getGraphicsModeProps = exports.getLodLevels = exports.getMesoscaleGroupParams = exports.MesoscaleGroup = exports.MesoscaleGroupObject = exports.MesoscaleGroupParams = exports.createClipMapping = exports.getClipObjects = exports.SimpleClipParams = exports.LodParams = exports.PatternParams = exports.EmissiveParams = exports.OpacityParams = exports.DimLightness = exports.LightnessParams = exports.RootParams = exports.ColorValueParam = exports.ColorParams = exports.getDistinctBaseColors = exports.getDistinctGroupColors = void 0;
 const objects_1 = require("../../../mol-plugin-state/objects");
 const param_definition_1 = require("../../../mol-util/param-definition");
 const mol_task_1 = require("../../../mol-task");
@@ -104,6 +104,7 @@ exports.ColorParams = {
     shift: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 100, step: 1 }, { hideIf: p => !p.type.includes('generate') }),
     lightness: param_definition_1.ParamDefinition.Numeric(0, { min: -6, max: 6, step: 0.1 }, { hideIf: p => p.type === 'custom' }),
     alpha: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }, { hideIf: p => p.type === 'custom' }),
+    emissive: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }, { hideIf: p => p.type === 'custom' }),
 };
 exports.ColorValueParam = param_definition_1.ParamDefinition.Color((0, color_1.Color)(0xFFFFFF));
 exports.RootParams = {
@@ -113,6 +114,7 @@ exports.RootParams = {
     shift: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 100, step: 1 }, { hideIf: p => !p.type.includes('generate') }),
     lightness: param_definition_1.ParamDefinition.Numeric(0, { min: -6, max: 6, step: 0.1 }, { hideIf: p => p.type === 'custom' }),
     alpha: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }, { hideIf: p => p.type === 'custom' }),
+    emissive: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }, { hideIf: p => p.type === 'custom' }),
 };
 exports.LightnessParams = {
     lightness: param_definition_1.ParamDefinition.Numeric(0, { min: -6, max: 6, step: 0.1 }),
@@ -121,6 +123,9 @@ exports.DimLightness = 6;
 exports.OpacityParams = {
     alpha: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
 };
+exports.EmissiveParams = {
+    emissive: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }),
+};
 exports.PatternParams = {
     frequency: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
     amplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
@@ -220,6 +225,7 @@ exports.MesoscaleGroupParams = {
     color: param_definition_1.ParamDefinition.Group(exports.RootParams),
     lightness: param_definition_1.ParamDefinition.Numeric(0, { min: -6, max: 6, step: 0.1 }),
     alpha: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
+    emissive: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }),
     lod: param_definition_1.ParamDefinition.Group(exports.LodParams),
     clip: param_definition_1.ParamDefinition.Group(exports.SimpleClipParams),
 };
@@ -462,7 +468,7 @@ exports.getEntityLabel = getEntityLabel;
 async function updateColors(plugin, values, tag, filter) {
     var _a, _b;
     const update = plugin.state.data.build();
-    const { type, value, shift, lightness, alpha } = values;
+    const { type, value, shift, lightness, alpha, emissive } = values;
     if (type === 'group-generate' || type === 'group-uniform') {
         const groups = getAllLeafGroups(plugin, tag);
         const baseColors = getDistinctBaseColors(groups.length, shift);
@@ -482,12 +488,14 @@ async function updateColors(plugin, values, tag, filter) {
                         old.colorTheme.params.lightness = lightness;
                         old.type.params.alpha = alpha;
                         old.type.params.xrayShaded = alpha < 1 ? 'inverted' : false;
+                        old.type.params.emissive = emissive;
                     }
                     else if (old.coloring) {
                         old.coloring.params.color = c;
                         old.coloring.params.lightness = lightness;
                         old.alpha = alpha;
                         old.xrayShaded = alpha < 1 ? true : false;
+                        old.emissive = emissive;
                     }
                 });
             }
@@ -496,6 +504,7 @@ async function updateColors(plugin, values, tag, filter) {
                 old.color.value = baseColors[i];
                 old.color.lightness = lightness;
                 old.color.alpha = alpha;
+                old.color.emissive = emissive;
             });
         }
     }
@@ -513,12 +522,14 @@ async function updateColors(plugin, values, tag, filter) {
                     old.colorTheme.params.lightness = lightness;
                     old.type.params.alpha = alpha;
                     old.type.params.xrayShaded = alpha < 1 ? 'inverted' : false;
+                    old.type.params.emissive = emissive;
                 }
                 else if (old.coloring) {
                     old.coloring.params.color = c;
                     old.coloring.params.lightness = lightness;
                     old.alpha = alpha;
                     old.xrayShaded = alpha < 1 ? true : false;
+                    old.emissive = emissive;
                 }
             });
         }
@@ -529,6 +540,7 @@ async function updateColors(plugin, values, tag, filter) {
                 old.color.value = value;
                 old.color.lightness = lightness;
                 old.color.alpha = alpha;
+                old.color.emissive = emissive;
             });
         }
     }

package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -59,7 +59,7 @@ export declare class EntityControls extends PluginUIComponent<{}, {
     };
     componentDidMount(): void;
     componentDidUpdate(): void;
-    get roots(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>>;
+    get roots(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>>;
     setGroupBy: (value: number) => void;
     get groupBy(): number;
     setFilter: (value: string) => void;
@@ -78,12 +78,12 @@ declare class Node<P extends {}, S extends {
     is(e: State.ObjectEvent): boolean;
     get ref(): string;
     get cell(): (P & {
-        cell: StateObjectCell<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>;
+        cell: StateObjectCell<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>;
         depth: number;
     } & {
         children?: any;
     })["cell"];
-    get roots(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>>;
+    get roots(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>>;
     componentDidMount(): void;
 }
 export declare class GroupNode extends Node<{
@@ -104,12 +104,12 @@ export declare class GroupNode extends Node<{
     toggleRoot: () => void;
     highlight: (e: React.MouseEvent<HTMLElement>) => void;
     clearHighlight: (e: React.MouseEvent<HTMLElement>) => void;
-    get groups(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>>;
-    get allGroups(): StateObjectCell<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
-    get entities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
-    get filteredEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
-    get allEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
-    get allFilteredEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state/transform").StateTransform<StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>>[];
+    get groups(): StateSelection.CellSeq<StateObjectCell<import("../data/state").MesoscaleGroupObject, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>>;
+    get allGroups(): StateObjectCell<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
+    get entities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
+    get filteredEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
+    get allEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
+    get allFilteredEntities(): StateObjectCell<PSO.Molecule.Structure.Representation3D | PSO.Shape.Representation3D, import("../../../mol-state").StateTransform<StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>>[];
     toggleVisible: (e: React.MouseEvent<HTMLElement>) => void;
     updateColor: (values: ColorProps) => void;
     updateRoot: (values: PD.Values) => Promise<void>;
@@ -149,15 +149,15 @@ export declare class EntityNode extends Node<{}, {
         objects: PD.ObjectList<PD.Normalize<{
             type: "none" | "sphere" | "cube" | "plane" | "cylinder" | "infiniteCone";
             invert: boolean;
-            position: import("../../../mol-math/linear-algebra/3d/vec3").Vec3;
+            position: import("../../../mol-math/linear-algebra").Vec3;
             rotation: PD.Normalize<{
                 axis: any;
                 angle: any;
             }>;
-            scale: import("../../../mol-math/linear-algebra/3d/vec3").Vec3;
+            scale: import("../../../mol-math/linear-algebra").Vec3;
         }>>;
     }> | undefined, PluginContext>;
-    get groups(): StateSelection.CellSeq<StateObjectCell<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/transform").StateTransform<StateTransformer<PSO.Root, import("../data/state").MesoscaleGroupObject, PD.Normalize<{
+    get groups(): StateSelection.CellSeq<StateObjectCell<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateTransform<StateTransformer<PSO.Root, import("../data/state").MesoscaleGroupObject, PD.Normalize<{
         root: boolean;
         index: number;
         tag: string;
@@ -170,9 +170,11 @@ export declare class EntityNode extends Node<{}, {
             shift: any;
             lightness: any;
             alpha: any;
+            emissive: any;
         }>;
         lightness: number;
         alpha: number;
+        emissive: number;
         lod: PD.Normalize<{
             lodLevels: any;
             cellSize: any;
@@ -202,6 +204,9 @@ export declare class EntityNode extends Node<{}, {
     get opacityValue(): {
         alpha: number;
     } | undefined;
+    get emissiveValue(): {
+        emissive: number;
+    } | undefined;
     get clipValue(): Clip.Props | undefined;
     get lodValue(): PD.Values<typeof LodParams> | undefined;
     get patternValue(): {
@@ -211,6 +216,7 @@ export declare class EntityNode extends Node<{}, {
     updateColor: ParamOnChange;
     updateLightness: (values: PD.Values) => Promise<void>;
     updateOpacity: (values: PD.Values) => Promise<void>;
+    updateEmissive: (values: PD.Values) => Promise<void>;
     updateClip: (props: Clip.Props) => void;
     updateLod: (values: PD.Values) => void;
     updatePattern: (values: PD.Values) => Promise<void>;

package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js

@@ -4,7 +4,7 @@ exports.EntityNode = exports.GroupNode = exports.EntityControls = exports.Select
 const tslib_1 = require("tslib");
 const jsx_runtime_1 = require("react/jsx-runtime");
 /**
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -388,7 +388,7 @@ class GroupNode extends Node {
         };
         this.updateColor = (values) => {
             const update = this.plugin.state.data.build();
-            const { value, type, lightness, alpha } = values;
+            const { value, type, lightness, alpha, emissive } = values;
             const entities = this.filteredEntities;
             let groupColors = [];
             if (type === 'generate') {
@@ -402,12 +402,14 @@ class GroupNode extends Node {
                         old.colorTheme.params.lightness = lightness;
                         old.type.params.alpha = alpha;
                         old.type.params.xrayShaded = alpha < 1 ? 'inverted' : false;
+                        old.type.params.emissive = emissive;
                     }
                     else {
                         old.coloring.params.color = c;
                         old.coloring.params.lightness = lightness;
                         old.alpha = alpha;
                         old.xrayShaded = alpha < 1 ? true : false;
+                        old.emissive = emissive;
                     }
                 });
             }
@@ -679,6 +681,16 @@ class EntityNode extends Node {
                 }
             }).commit();
         };
+        this.updateEmissive = (values) => {
+            return this.plugin.build().to(this.ref).update(old => {
+                if (old.type) {
+                    old.type.params.emissive = values.emissive;
+                }
+                else {
+                    old.emissive = values.emissive;
+                }
+            }).commit();
+        };
         this.updateClip = (props) => {
             const params = this.cell.transform.params;
             const clip = params.type ? params.type.params.clip : params.clip;
@@ -737,6 +749,12 @@ class EntityNode extends Node {
             alpha: (_e = (_c = (_b = (_a = this.cell.transform.params) === null || _a === void 0 ? void 0 : _a.type) === null || _b === void 0 ? void 0 : _b.params.alpha) !== null && _c !== void 0 ? _c : (_d = this.cell.transform.params) === null || _d === void 0 ? void 0 : _d.alpha) !== null && _e !== void 0 ? _e : 1
         };
     }
+    get emissiveValue() {
+        var _a, _b, _c, _d, _e;
+        return {
+            emissive: (_e = (_c = (_b = (_a = this.cell.transform.params) === null || _a === void 0 ? void 0 : _a.type) === null || _b === void 0 ? void 0 : _b.params.emissive) !== null && _c !== void 0 ? _c : (_d = this.cell.transform.params) === null || _d === void 0 ? void 0 : _d.emissive) !== null && _e !== void 0 ? _e : 0
+        };
+    }
     get clipValue() {
         var _a, _b;
         return (_b = (_a = this.cell.transform.params.type) === null || _a === void 0 ? void 0 : _a.params.clip) !== null && _b !== void 0 ? _b : this.cell.transform.params.clip;
@@ -769,6 +787,7 @@ class EntityNode extends Node {
         const colorValue = this.colorValue;
         const lightnessValue = this.lightnessValue;
         const opacityValue = this.opacityValue;
+        const emissiveValue = this.emissiveValue;
         const lodValue = this.lodValue;
         const patternValue = this.patternValue;
         const l = (0, state_1.getEntityLabel)(this.plugin, this.cell);
@@ -776,7 +795,7 @@ class EntityNode extends Node {
         const color = colorValue !== undefined && (0, jsx_runtime_1.jsx)(common_1.Button, { style: { backgroundColor: color_1.Color.toStyle(colorValue), minWidth: 32, width: 32, borderRight: `6px solid ${color_1.Color.toStyle(color_1.Color.lighten(colorValue, (lightnessValue === null || lightnessValue === void 0 ? void 0 : lightnessValue.lightness) || 0))}` }, onClick: this.toggleColor });
         const clip = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ContentCutSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleClip });
         const visibility = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cellState.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleVisible });
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", { className: `msp-flex-row`, style: { margin: `1px 5px 1px ${depth * 10 + 5}px` }, children: [label, color, clip, visibility] }), this.state.action === 'color' && colorValue !== void 0 && (0, jsx_runtime_1.jsx)("div", { style: { marginRight: 5 }, className: 'msp-accent-offset', children: (0, jsx_runtime_1.jsxs)(common_1.ControlGroup, { header: 'Color', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleColor, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: [(0, jsx_runtime_1.jsx)(color_2.CombinedColorControl, { param: state_1.ColorValueParam, value: colorValue !== null && colorValue !== void 0 ? colorValue : (0, color_1.Color)(0xFFFFFF), onChange: this.updateColor, name: 'color', hideNameRow: true }), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.LightnessParams, values: lightnessValue, onChangeValues: this.updateLightness }), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.OpacityParams, values: opacityValue, onChangeValues: this.updateOpacity }), patternValue && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.PatternParams, values: patternValue, onChangeValues: this.updatePattern })] }) }), this.state.action === 'clip' && (0, jsx_runtime_1.jsx)("div", { style: { marginRight: 5 }, className: 'msp-accent-offset', children: (0, jsx_runtime_1.jsxs)(common_1.ControlGroup, { header: 'Clip', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleClip, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: this.clipMapping }), lodValue && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.LodParams, values: lodValue, onChangeValues: this.updateLod })] }) })] });
+        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", { className: `msp-flex-row`, style: { margin: `1px 5px 1px ${depth * 10 + 5}px` }, children: [label, color, clip, visibility] }), this.state.action === 'color' && colorValue !== void 0 && (0, jsx_runtime_1.jsx)("div", { style: { marginRight: 5 }, className: 'msp-accent-offset', children: (0, jsx_runtime_1.jsxs)(common_1.ControlGroup, { header: 'Color', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleColor, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: [(0, jsx_runtime_1.jsx)(color_2.CombinedColorControl, { param: state_1.ColorValueParam, value: colorValue !== null && colorValue !== void 0 ? colorValue : (0, color_1.Color)(0xFFFFFF), onChange: this.updateColor, name: 'color', hideNameRow: true }), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.LightnessParams, values: lightnessValue, onChangeValues: this.updateLightness }), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.OpacityParams, values: opacityValue, onChangeValues: this.updateOpacity }), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.EmissiveParams, values: emissiveValue, onChangeValues: this.updateEmissive }), patternValue && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.PatternParams, values: patternValue, onChangeValues: this.updatePattern })] }) }), this.state.action === 'clip' && (0, jsx_runtime_1.jsx)("div", { style: { marginRight: 5 }, className: 'msp-accent-offset', children: (0, jsx_runtime_1.jsxs)(common_1.ControlGroup, { header: 'Clip', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleClip, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: this.clipMapping }), lodValue && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.LodParams, values: lodValue, onChangeValues: this.updateLod })] }) })] });
     }
 }
 exports.EntityNode = EntityNode;

package/lib/commonjs/apps/viewer/app.d.ts

@@ -156,42 +156,48 @@ export declare class Viewer {
      *  });
      */
     loadTrajectory(params: LoadTrajectoryParams): Promise<{
-        model: StateObjectSelector<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+        model: StateObjectSelector<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
         coords: any;
         preset: {
-            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
             representation: any;
         } | {
             models?: undefined;
             structures?: undefined;
         } | {
-            models: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
-            structures: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
+            models: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>[];
+            structures: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>[];
         } | {
-            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
             representation: any;
         } | {
-            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+            model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
+            structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
             representation: any;
         } | undefined;
     }>;
-    loadMvsFromUrl(url: string, format: 'mvsj' | 'mvsx'): Promise<void>;
+    loadMvsFromUrl(url: string, format: 'mvsj' | 'mvsx', options?: {
+        replaceExisting?: boolean;
+        keepCamera?: boolean;
+    }): Promise<void>;
     /** Load MolViewSpec from `data`.
      * If `format` is 'mvsj', `data` must be a string or a Uint8Array containing a UTF8-encoded string.
      * If `format` is 'mvsx', `data` must be a Uint8Array or a string containing base64-encoded binary data prefixed with 'base64,'. */
-    loadMvsData(data: string | Uint8Array, format: 'mvsj' | 'mvsx'): Promise<void>;
+    loadMvsData(data: string | Uint8Array, format: 'mvsj' | 'mvsx', options?: {
+        replaceExisting?: boolean;
+        keepCamera?: boolean;
+    }): Promise<void>;
     handleResize(): void;
     dispose(): void;
 }
@@ -257,18 +263,18 @@ export declare const ViewerAutoPreset: StructureRepresentationPresetProvider<{
     representations?: undefined;
 } | {
     components: {
-        polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+        polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined;
     };
     representations: {
-        polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+        polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
     };
 } | {
     components: {
-        all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+        all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined;
         branched: undefined;
     };
     representations: {
-        all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
+        all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>;
     };
 }>;
 export declare const PluginExtensions: {