molstar 4.0.1 → 4.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +197 -197
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +129 -129
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -9
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +8 -8
- package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
- package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
- package/lib/apps/mesoscale-explorer/data/state.js +14 -2
- package/lib/apps/mesoscale-explorer/index.html +100 -100
- package/lib/apps/mesoscale-explorer/style.scss +33 -33
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
- package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
- package/lib/apps/viewer/app.d.ts +30 -24
- package/lib/apps/viewer/app.js +6 -6
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +129 -129
- package/lib/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/cli/chem-comp-dict/util.d.ts +112 -112
- package/lib/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/cli/cifschema/util/generate.js +12 -12
- package/lib/cli/lipid-params/index.js +9 -9
- package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
- package/lib/cli/mvs/mvs-print-schema.js +1 -0
- package/lib/cli/mvs/mvs-render.d.ts +1 -0
- package/lib/cli/mvs/mvs-render.js +1 -0
- package/lib/cli/mvs/mvs-validate.d.ts +1 -0
- package/lib/cli/mvs/mvs-validate.js +1 -0
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
- package/lib/commonjs/apps/viewer/app.d.ts +30 -24
- package/lib/commonjs/apps/viewer/app.js +6 -6
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
- package/lib/commonjs/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
- package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
- package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
- package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
- package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
- package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
- package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
- package/lib/commonjs/extensions/backgrounds/index.js +2 -1
- package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
- package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
- package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
- package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/camera.js +29 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
- package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
- package/lib/commonjs/extensions/mvs/load.js +12 -6
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
- package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
- package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
- package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
- package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
- package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
- package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
- package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
- package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
- package/lib/commonjs/mol-geo/geometry/base.js +4 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
- package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
- package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
- package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
- package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
- package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
- package/lib/commonjs/mol-gl/renderable.js +2 -2
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderer.js +58 -49
- package/lib/commonjs/mol-gl/scene.d.ts +3 -1
- package/lib/commonjs/mol-gl/scene.js +26 -1
- package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
- package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
- package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
- package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
- package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
- package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
- package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
- package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
- package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
- package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
- package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
- package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
- package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
- package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
- package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
- package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
- package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
- package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
- package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
- package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
- package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
- package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
- package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
- package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
- package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
- package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
- package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
- package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
- package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
- package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
- package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
- package/lib/commonjs/mol-gl/shader/marking/edge.frag.js +28 -28
- package/lib/commonjs/mol-gl/shader/marking/overlay.frag.js +26 -26
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +66 -63
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +49 -49
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +95 -95
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.js +60 -56
- package/lib/commonjs/mol-gl/shader/points.vert.js +38 -38
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +150 -150
- package/lib/commonjs/mol-gl/shader/quad.vert.js +10 -10
- package/lib/commonjs/mol-gl/shader/shadows.frag.js +123 -123
- package/lib/commonjs/mol-gl/shader/smaa/blend.frag.js +56 -56
- package/lib/commonjs/mol-gl/shader/smaa/blend.vert.js +25 -25
- package/lib/commonjs/mol-gl/shader/smaa/edges.frag.js +66 -66
- package/lib/commonjs/mol-gl/shader/smaa/edges.vert.js +26 -26
- package/lib/commonjs/mol-gl/shader/smaa/weights.frag.js +206 -206
- package/lib/commonjs/mol-gl/shader/smaa/weights.vert.js +32 -32
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +149 -143
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +99 -100
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +3 -2
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +213 -174
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.js +86 -84
- package/lib/commonjs/mol-gl/shader/text.vert.js +85 -85
- package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +24 -18
- package/lib/commonjs/mol-gl/webgl/compat.js +12 -12
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.d.ts +1 -1
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +5 -2
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +4 -4
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/reader/cif.d.ts +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.d.ts +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.d.ts +3 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.js +8 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +20 -0
- package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit.js +5 -2
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +118 -118
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +6 -6
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.d.ts +3 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -208
- package/lib/commonjs/mol-plugin/config.d.ts +5 -0
- package/lib/commonjs/mol-plugin/context.d.ts +2 -2
- package/lib/commonjs/mol-plugin/state.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/actions/structure.js +3 -5
- package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/builder/data.d.ts +4 -4
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +27 -27
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +42 -42
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +4 -4
- package/lib/commonjs/mol-plugin-state/builder/structure.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/formats/coordinates.d.ts +8 -8
- package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +8 -8
- package/lib/commonjs/mol-plugin-state/formats/topology.d.ts +12 -12
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +33 -33
- package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.js +69 -0
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +3 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +9 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +32 -19
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/objects.d.ts +32 -32
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +33 -8
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +121 -6
- package/lib/commonjs/mol-plugin-state/transforms/shape.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +16 -8
- package/lib/commonjs/mol-plugin-state/transforms/volume.js +51 -2
- package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -2
- package/lib/commonjs/mol-plugin-ui/state/update-transform.d.ts +3 -3
- package/lib/commonjs/mol-repr/representation.d.ts +6 -2
- package/lib/commonjs/mol-repr/representation.js +12 -2
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-representation.js +7 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +8 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.js +5 -1
- package/lib/commonjs/mol-repr/structure/params.d.ts +8 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +14 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/units-representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/units-representation.js +9 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +9 -1
- package/lib/commonjs/mol-repr/structure/units-visual.js +5 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/visual.d.ts +6 -1
- package/lib/commonjs/mol-repr/visual.js +55 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +6 -0
- package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -0
- package/lib/commonjs/mol-repr/volume/representation.d.ts +2 -1
- package/lib/commonjs/mol-repr/volume/representation.js +9 -2
- package/lib/commonjs/mol-repr/volume/segment.d.ts +5 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -0
- package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +3 -3
- package/lib/commonjs/mol-state/tree/immutable.d.ts +1 -1
- package/lib/commonjs/mol-state/tree/transient.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/external-volume.d.ts +3 -1
- package/lib/commonjs/mol-theme/color/external-volume.js +8 -2
- package/lib/commonjs/mol-theme/color.d.ts +1 -0
- package/lib/commonjs/mol-theme/emissive.d.ts +40 -0
- package/lib/commonjs/mol-theme/emissive.js +137 -0
- package/lib/commonjs/mol-theme/substance.d.ts +1 -1
- package/lib/commonjs/mol-theme/substance.js +2 -2
- package/lib/commonjs/mol-theme/transparency.d.ts +0 -1
- package/lib/commonjs/mol-util/input/input-observer.js +2 -0
- package/lib/commonjs/mol-util/set.d.ts +1 -1
- package/lib/commonjs/mol-util/set.js +17 -1
- package/lib/commonjs/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/commonjs/servers/volume/config.js +5 -5
- package/lib/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/examples/alpha-orbitals/index.html +72 -72
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/extensions/alpha-orbitals/transforms.d.ts +2 -2
- package/lib/extensions/anvil/behavior.d.ts +10 -9
- package/lib/extensions/anvil/representation.d.ts +5 -0
- package/lib/extensions/assembly-symmetry/behavior.d.ts +2 -1
- package/lib/extensions/assembly-symmetry/prop.js +24 -24
- package/lib/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/extensions/backgrounds/index.d.ts +2 -2
- package/lib/extensions/backgrounds/index.js +2 -1
- package/lib/extensions/dnatco/behavior.d.ts +1 -1
- package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
- package/lib/extensions/dnatco/confal-pyramids/behavior.js +5 -5
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
- package/lib/extensions/dnatco/ntc-tube/behavior.js +5 -5
- package/lib/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/extensions/g3d/format.d.ts +6 -6
- package/lib/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/extensions/geo-export/glb-exporter.js +6 -4
- package/lib/extensions/geo-export/index.d.ts +1 -1
- package/lib/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/extensions/meshes/mesh-extension.d.ts +2 -3
- package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
- package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
- package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
- package/lib/extensions/model-export/index.d.ts +1 -1
- package/lib/extensions/mp4-export/index.d.ts +1 -1
- package/lib/extensions/mvs/behavior.d.ts +1 -1
- package/lib/extensions/mvs/camera.d.ts +2 -0
- package/lib/extensions/mvs/camera.js +27 -1
- package/lib/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
- package/lib/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
- package/lib/extensions/mvs/components/custom-label/representation.d.ts +4 -2
- package/lib/extensions/mvs/components/custom-label/visual.d.ts +1 -0
- package/lib/extensions/mvs/components/formats.d.ts +6 -4
- package/lib/extensions/mvs/components/formats.js +2 -1
- package/lib/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/extensions/mvs/load.d.ts +2 -0
- package/lib/extensions/mvs/load.js +13 -7
- package/lib/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
- package/lib/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
- package/lib/extensions/rcsb/validation-report/behavior.d.ts +22 -22
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
- package/lib/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
- package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
- package/lib/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
- package/lib/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
- package/lib/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
- package/lib/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
- package/lib/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
- package/lib/extensions/volumes-and-segmentations/index.d.ts +1 -1
- package/lib/extensions/wwpdb/ccd/behavior.d.ts +1 -1
- package/lib/extensions/wwpdb/ccd/representation.d.ts +4 -4
- package/lib/extensions/zenodo/index.d.ts +1 -1
- package/lib/mol-canvas3d/canvas3d.d.ts +14 -2
- package/lib/mol-canvas3d/canvas3d.js +2 -2
- package/lib/mol-canvas3d/controls/trackball.js +1 -1
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/mol-canvas3d/passes/background.d.ts +6 -1
- package/lib/mol-canvas3d/passes/background.js +14 -2
- package/lib/mol-canvas3d/passes/bloom.d.ts +37 -0
- package/lib/mol-canvas3d/passes/bloom.js +268 -0
- package/lib/mol-canvas3d/passes/dpoit.js +4 -2
- package/lib/mol-canvas3d/passes/draw.d.ts +11 -7
- package/lib/mol-canvas3d/passes/draw.js +30 -4
- package/lib/mol-canvas3d/passes/image.d.ts +6 -0
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +31 -5
- package/lib/mol-canvas3d/passes/postprocessing.js +33 -39
- package/lib/mol-geo/geometry/base.d.ts +3 -1
- package/lib/mol-geo/geometry/base.js +4 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +4 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
- package/lib/mol-geo/geometry/emissive-data.d.ts +26 -0
- package/lib/mol-geo/geometry/emissive-data.js +72 -0
- package/lib/mol-geo/geometry/image/image.d.ts +2 -1
- package/lib/mol-geo/geometry/image/image.js +4 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +3 -2
- package/lib/mol-geo/geometry/lines/lines.js +4 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.js +34 -1
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +11 -4
- package/lib/mol-geo/geometry/points/points.d.ts +3 -2
- package/lib/mol-geo/geometry/points/points.js +4 -1
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +2 -2
- package/lib/mol-geo/geometry/spheres/spheres.js +7 -3
- package/lib/mol-geo/geometry/text/text.d.ts +2 -1
- package/lib/mol-geo/geometry/text/text.js +4 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +32 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
- package/lib/mol-geo/util/location-iterator.d.ts +5 -2
- package/lib/mol-geo/util/location-iterator.js +8 -3
- package/lib/mol-gl/renderable/cylinders.d.ts +10 -0
- package/lib/mol-gl/renderable/direct-volume.d.ts +10 -0
- package/lib/mol-gl/renderable/image.d.ts +10 -0
- package/lib/mol-gl/renderable/lines.d.ts +10 -0
- package/lib/mol-gl/renderable/mesh.d.ts +10 -0
- package/lib/mol-gl/renderable/points.d.ts +10 -0
- package/lib/mol-gl/renderable/schema.d.ts +24 -1
- package/lib/mol-gl/renderable/schema.js +14 -1
- package/lib/mol-gl/renderable/spheres.d.ts +10 -0
- package/lib/mol-gl/renderable/text.d.ts +10 -0
- package/lib/mol-gl/renderable/texture-mesh.d.ts +10 -0
- package/lib/mol-gl/renderable.d.ts +1 -1
- package/lib/mol-gl/renderable.js +2 -2
- package/lib/mol-gl/renderer.d.ts +2 -1
- package/lib/mol-gl/renderer.js +58 -49
- package/lib/mol-gl/scene.d.ts +3 -1
- package/lib/mol-gl/scene.js +26 -1
- package/lib/mol-gl/shader/background.frag.d.ts +1 -1
- package/lib/mol-gl/shader/background.frag.js +95 -94
- package/lib/mol-gl/shader/background.vert.js +11 -11
- package/lib/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
- package/lib/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
- package/lib/mol-gl/shader/bloom/blur.frag.js +29 -0
- package/lib/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
- package/lib/mol-gl/shader/bloom/composite.frag.js +34 -0
- package/lib/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
- package/lib/mol-gl/shader/bloom/luminosity.frag.js +53 -0
- package/lib/mol-gl/shader/cas.frag.js +144 -144
- package/lib/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
- package/lib/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
- package/lib/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
- package/lib/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
- package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
- package/lib/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
- package/lib/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
- package/lib/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
- package/lib/mol-gl/shader/chunks/check-transparency.glsl.js +17 -0
- package/lib/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
- package/lib/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
- package/lib/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
- package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
- package/lib/mol-gl/shader/chunks/common.glsl.js +234 -234
- package/lib/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
- package/lib/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
- package/lib/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
- package/lib/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
- package/lib/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
- package/lib/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
- package/lib/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
- package/lib/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
- package/lib/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
- package/lib/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
- package/lib/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
- package/lib/mol-gl/shader/compose.frag.js +12 -12
- package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
- package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
- package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
- package/lib/mol-gl/shader/copy.frag.js +11 -11
- package/lib/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/mol-gl/shader/cylinders.frag.js +267 -264
- package/lib/mol-gl/shader/cylinders.vert.js +89 -89
- package/lib/mol-gl/shader/depth-merge.frag.js +23 -23
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +362 -356
- package/lib/mol-gl/shader/direct-volume.vert.js +41 -41
- package/lib/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
- package/lib/mol-gl/shader/evaluate-wboit.frag.js +17 -17
- package/lib/mol-gl/shader/fxaa.frag.js +228 -228
- package/lib/mol-gl/shader/gaussian-density.frag.js +49 -49
- package/lib/mol-gl/shader/gaussian-density.vert.js +27 -27
- package/lib/mol-gl/shader/hi-z.frag.js +18 -18
- package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
- package/lib/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
- package/lib/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/mol-gl/shader/image.frag.js +170 -161
- package/lib/mol-gl/shader/image.vert.js +21 -21
- package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/mol-gl/shader/lines.frag.js +43 -40
- package/lib/mol-gl/shader/lines.vert.js +117 -117
- package/lib/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
- package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
- package/lib/mol-gl/shader/marking/edge.frag.js +28 -28
- package/lib/mol-gl/shader/marking/overlay.frag.js +26 -26
- package/lib/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/mol-gl/shader/mesh.frag.js +66 -63
- package/lib/mol-gl/shader/mesh.vert.js +49 -49
- package/lib/mol-gl/shader/outlines.frag.js +95 -95
- package/lib/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/mol-gl/shader/points.frag.js +60 -56
- package/lib/mol-gl/shader/points.vert.js +38 -38
- package/lib/mol-gl/shader/postprocessing.frag.js +150 -150
- package/lib/mol-gl/shader/quad.vert.js +10 -10
- package/lib/mol-gl/shader/shadows.frag.js +123 -123
- package/lib/mol-gl/shader/smaa/blend.frag.js +56 -56
- package/lib/mol-gl/shader/smaa/blend.vert.js +25 -25
- package/lib/mol-gl/shader/smaa/edges.frag.js +66 -66
- package/lib/mol-gl/shader/smaa/edges.vert.js +26 -26
- package/lib/mol-gl/shader/smaa/weights.frag.js +206 -206
- package/lib/mol-gl/shader/smaa/weights.vert.js +32 -32
- package/lib/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/mol-gl/shader/spheres.frag.js +149 -143
- package/lib/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
- package/lib/mol-gl/shader/ssao-blur.frag.js +99 -100
- package/lib/mol-gl/shader/ssao.frag.d.ts +3 -2
- package/lib/mol-gl/shader/ssao.frag.js +213 -174
- package/lib/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/mol-gl/shader/text.frag.js +86 -84
- package/lib/mol-gl/shader/text.vert.js +85 -85
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/mol-gl/shader-code.d.ts +1 -1
- package/lib/mol-gl/shader-code.js +24 -18
- package/lib/mol-gl/webgl/compat.js +12 -12
- package/lib/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/mol-gl/webgl/render-item.js +1 -1
- package/lib/mol-io/common/binary-cif/array-encoder.d.ts +1 -1
- package/lib/mol-io/common/binary-cif/array-encoder.js +5 -2
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd-extras.d.ts +4 -4
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/mol-io/reader/cif.d.ts +1 -1
- package/lib/mol-io/writer/cif/encoder/binary.d.ts +1 -1
- package/lib/mol-io/writer/cif/encoder/binary.js +10 -2
- package/lib/mol-math/linear-algebra/3d/mat3.d.ts +3 -1
- package/lib/mol-math/linear-algebra/3d/mat3.js +8 -1
- package/lib/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
- package/lib/mol-math/linear-algebra/3d/vec3.js +20 -0
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
- package/lib/mol-model/structure/structure/unit/bonds/data.js +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
- package/lib/mol-model/structure/structure/unit.d.ts +2 -2
- package/lib/mol-model/structure/structure/unit.js +5 -2
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/schema.d.ts +118 -118
- package/lib/mol-model-formats/structure/common/component.d.ts +2 -2
- package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-plugin/behavior/behavior.d.ts +6 -6
- package/lib/mol-plugin/behavior/dynamic/camera.d.ts +3 -3
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/interactions.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/structure-info.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -4
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -2
- package/lib/mol-plugin/commands.d.ts +1 -208
- package/lib/mol-plugin/config.d.ts +5 -0
- package/lib/mol-plugin/context.d.ts +2 -2
- package/lib/mol-plugin/state.d.ts +6 -6
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/structure.d.ts +3 -3
- package/lib/mol-plugin-state/actions/structure.js +3 -5
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/builder/data.d.ts +4 -4
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +27 -27
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +42 -42
- package/lib/mol-plugin-state/builder/structure/representation.d.ts +4 -4
- package/lib/mol-plugin-state/builder/structure.d.ts +7 -7
- package/lib/mol-plugin-state/formats/coordinates.d.ts +8 -8
- package/lib/mol-plugin-state/formats/shape.d.ts +8 -8
- package/lib/mol-plugin-state/formats/topology.d.ts +12 -12
- package/lib/mol-plugin-state/formats/volume.d.ts +33 -33
- package/lib/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
- package/lib/mol-plugin-state/helpers/structure-emissive.js +64 -0
- package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/mol-plugin-state/manager/structure/component.d.ts +3 -1
- package/lib/mol-plugin-state/manager/structure/component.js +9 -1
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
- package/lib/mol-plugin-state/manager/structure/measurement.js +32 -19
- package/lib/mol-plugin-state/manager/structure/selection.d.ts +1 -1
- package/lib/mol-plugin-state/manager/volume/hierarchy.d.ts +1 -1
- package/lib/mol-plugin-state/objects.d.ts +32 -32
- package/lib/mol-plugin-state/transforms/representation.d.ts +33 -8
- package/lib/mol-plugin-state/transforms/representation.js +120 -5
- package/lib/mol-plugin-state/transforms/shape.d.ts +1 -1
- package/lib/mol-plugin-state/transforms/volume.d.ts +16 -8
- package/lib/mol-plugin-state/transforms/volume.js +51 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +445 -445
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/state/apply-action.d.ts +2 -2
- package/lib/mol-plugin-ui/state/update-transform.d.ts +3 -3
- package/lib/mol-repr/representation.d.ts +6 -2
- package/lib/mol-repr/representation.js +12 -2
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
- package/lib/mol-repr/structure/complex-representation.js +7 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
- package/lib/mol-repr/structure/complex-visual.js +5 -1
- package/lib/mol-repr/structure/params.d.ts +8 -0
- package/lib/mol-repr/structure/registry.d.ts +14 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/label.d.ts +3 -0
- package/lib/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-representation.d.ts +1 -1
- package/lib/mol-repr/structure/units-representation.js +9 -3
- package/lib/mol-repr/structure/units-visual.d.ts +9 -1
- package/lib/mol-repr/structure/units-visual.js +5 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/visual.d.ts +6 -1
- package/lib/mol-repr/visual.js +57 -3
- package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/mol-repr/volume/isosurface.d.ts +6 -0
- package/lib/mol-repr/volume/registry.d.ts +4 -0
- package/lib/mol-repr/volume/representation.d.ts +2 -1
- package/lib/mol-repr/volume/representation.js +9 -2
- package/lib/mol-repr/volume/segment.d.ts +5 -0
- package/lib/mol-repr/volume/slice.d.ts +3 -0
- package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
- package/lib/mol-state/tree/immutable.d.ts +1 -1
- package/lib/mol-state/tree/transient.d.ts +2 -2
- package/lib/mol-theme/color/external-volume.d.ts +3 -1
- package/lib/mol-theme/color/external-volume.js +8 -2
- package/lib/mol-theme/color.d.ts +1 -0
- package/lib/mol-theme/emissive.d.ts +40 -0
- package/lib/mol-theme/emissive.js +134 -0
- package/lib/mol-theme/substance.d.ts +1 -1
- package/lib/mol-theme/substance.js +2 -2
- package/lib/mol-theme/transparency.d.ts +0 -1
- package/lib/mol-util/input/input-observer.js +2 -0
- package/lib/mol-util/set.d.ts +1 -1
- package/lib/mol-util/set.js +17 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/servers/volume/config.js +5 -5
- package/package.json +195 -193
|
@@ -1,138 +1,138 @@
|
|
|
1
|
-
<!DOCTYPE html>
|
|
2
|
-
<html lang="en">
|
|
3
|
-
<head>
|
|
4
|
-
<meta charset="utf-8" />
|
|
5
|
-
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
-
<title>Mol* Plugin Wrapper</title>
|
|
7
|
-
<style>
|
|
8
|
-
* {
|
|
9
|
-
margin: 0;
|
|
10
|
-
padding: 0;
|
|
11
|
-
box-sizing: border-box;
|
|
12
|
-
}
|
|
13
|
-
#app {
|
|
14
|
-
position: absolute;
|
|
15
|
-
left: 160px;
|
|
16
|
-
top: 100px;
|
|
17
|
-
width: 600px;
|
|
18
|
-
height: 600px;
|
|
19
|
-
border: 1px solid #ccc;
|
|
20
|
-
}
|
|
21
|
-
|
|
22
|
-
#controls {
|
|
23
|
-
position: absolute;
|
|
24
|
-
width: 130px;
|
|
25
|
-
top: 10px;
|
|
26
|
-
left: 10px;
|
|
27
|
-
}
|
|
28
|
-
|
|
29
|
-
#controls > button {
|
|
30
|
-
display: block;
|
|
31
|
-
width: 100%;
|
|
32
|
-
text-align: left;
|
|
33
|
-
}
|
|
34
|
-
|
|
35
|
-
#controls > hr {
|
|
36
|
-
margin: 5px 0;
|
|
37
|
-
}
|
|
38
|
-
|
|
39
|
-
#controls > input, #controls > select {
|
|
40
|
-
width: 100%;
|
|
41
|
-
display: block;
|
|
42
|
-
}
|
|
43
|
-
</style>
|
|
44
|
-
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
45
|
-
<script type="text/javascript" src="./index.js"></script>
|
|
46
|
-
</head>
|
|
47
|
-
<body>
|
|
48
|
-
<div id='controls'>
|
|
49
|
-
<h3>Source</h3>
|
|
50
|
-
<input type='text' id='url' placeholder='url' />
|
|
51
|
-
<input type='text' id='assemblyId' placeholder='assembly id' />
|
|
52
|
-
<select id='format'>
|
|
53
|
-
<option value='mmcif' selected>mmCIF</option>
|
|
54
|
-
<option value='pdb'>PDB</option>
|
|
55
|
-
</select>
|
|
56
|
-
</div>
|
|
57
|
-
<div id="app"></div>
|
|
58
|
-
<script>
|
|
59
|
-
function $(id) { return document.getElementById(id); }
|
|
60
|
-
|
|
61
|
-
var pdbId = '1grm', assemblyId= '1';
|
|
62
|
-
var url = 'https://www.ebi.ac.uk/pdbe/static/entry/' + pdbId + '_updated.cif';
|
|
63
|
-
var format = 'mmcif';
|
|
64
|
-
|
|
65
|
-
$('url').value = url;
|
|
66
|
-
$('url').onchange = function (e) { url = e.target.value; }
|
|
67
|
-
$('assemblyId').value = assemblyId;
|
|
68
|
-
$('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
|
|
69
|
-
$('format').value = format;
|
|
70
|
-
$('format').onchange = function (e) { format = e.target.value; }
|
|
71
|
-
|
|
72
|
-
BasicMolStarWrapper.init('app' /** or document.getElementById('app') */).then(() => {
|
|
73
|
-
BasicMolStarWrapper.setBackground(0xffffff);
|
|
74
|
-
});
|
|
75
|
-
|
|
76
|
-
addControl('Load Asym Unit', () => BasicMolStarWrapper.load({ url: url, format: format }));
|
|
77
|
-
addControl('Load Assembly', () => BasicMolStarWrapper.load({ url: url, format: format, assemblyId: assemblyId }));
|
|
78
|
-
|
|
79
|
-
addSeparator();
|
|
80
|
-
|
|
81
|
-
addHeader('Camera');
|
|
82
|
-
addControl('Toggle Spin', () => BasicMolStarWrapper.toggleSpin());
|
|
83
|
-
|
|
84
|
-
addSeparator();
|
|
85
|
-
|
|
86
|
-
addHeader('Animation');
|
|
87
|
-
|
|
88
|
-
// adjust this number to make the animation faster or slower
|
|
89
|
-
// requires to "restart" the animation if changed
|
|
90
|
-
BasicMolStarWrapper.animate.modelIndex.targetFps = 30;
|
|
91
|
-
|
|
92
|
-
addControl('Play To End', () => BasicMolStarWrapper.animate.modelIndex.onceForward());
|
|
93
|
-
addControl('Play To Start', () => BasicMolStarWrapper.animate.modelIndex.onceBackward());
|
|
94
|
-
addControl('Play Palindrome', () => BasicMolStarWrapper.animate.modelIndex.palindrome());
|
|
95
|
-
addControl('Play Loop', () => BasicMolStarWrapper.animate.modelIndex.loop());
|
|
96
|
-
addControl('Stop', () => BasicMolStarWrapper.animate.modelIndex.stop());
|
|
97
|
-
|
|
98
|
-
addHeader('Misc');
|
|
99
|
-
|
|
100
|
-
addControl('Apply Stripes', () => BasicMolStarWrapper.coloring.applyStripes());
|
|
101
|
-
addControl('Apply Custom Theme', () => BasicMolStarWrapper.coloring.applyCustomTheme());
|
|
102
|
-
addControl('Default Coloring', () => BasicMolStarWrapper.coloring.applyDefault());
|
|
103
|
-
|
|
104
|
-
addHeader('Interactivity');
|
|
105
|
-
addControl('Highlight seq_id=7', () => BasicMolStarWrapper.interactivity.highlightOn());
|
|
106
|
-
addControl('Clear Highlight', () => BasicMolStarWrapper.interactivity.clearHighlight());
|
|
107
|
-
|
|
108
|
-
addHeader('Tests');
|
|
109
|
-
|
|
110
|
-
addControl('Static Superposition', () => BasicMolStarWrapper.tests.staticSuperposition());
|
|
111
|
-
addControl('Dynamic Superposition', () => BasicMolStarWrapper.tests.dynamicSuperposition());
|
|
112
|
-
addControl('Validation Tooltip', () => BasicMolStarWrapper.tests.toggleValidationTooltip());
|
|
113
|
-
|
|
114
|
-
addControl('Show Toasts', () => BasicMolStarWrapper.tests.showToasts());
|
|
115
|
-
addControl('Hide Toasts', () => BasicMolStarWrapper.tests.hideToasts());
|
|
116
|
-
|
|
117
|
-
////////////////////////////////////////////////////////
|
|
118
|
-
|
|
119
|
-
function addControl(label, action) {
|
|
120
|
-
var btn = document.createElement('button');
|
|
121
|
-
btn.onclick = action;
|
|
122
|
-
btn.innerText = label;
|
|
123
|
-
$('controls').appendChild(btn);
|
|
124
|
-
}
|
|
125
|
-
|
|
126
|
-
function addSeparator() {
|
|
127
|
-
var hr = document.createElement('hr');
|
|
128
|
-
$('controls').appendChild(hr);
|
|
129
|
-
}
|
|
130
|
-
|
|
131
|
-
function addHeader(header) {
|
|
132
|
-
var h = document.createElement('h3');
|
|
133
|
-
h.innerText = header;
|
|
134
|
-
$('controls').appendChild(h);
|
|
135
|
-
}
|
|
136
|
-
</script>
|
|
137
|
-
</body>
|
|
1
|
+
<!DOCTYPE html>
|
|
2
|
+
<html lang="en">
|
|
3
|
+
<head>
|
|
4
|
+
<meta charset="utf-8" />
|
|
5
|
+
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
+
<title>Mol* Plugin Wrapper</title>
|
|
7
|
+
<style>
|
|
8
|
+
* {
|
|
9
|
+
margin: 0;
|
|
10
|
+
padding: 0;
|
|
11
|
+
box-sizing: border-box;
|
|
12
|
+
}
|
|
13
|
+
#app {
|
|
14
|
+
position: absolute;
|
|
15
|
+
left: 160px;
|
|
16
|
+
top: 100px;
|
|
17
|
+
width: 600px;
|
|
18
|
+
height: 600px;
|
|
19
|
+
border: 1px solid #ccc;
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
#controls {
|
|
23
|
+
position: absolute;
|
|
24
|
+
width: 130px;
|
|
25
|
+
top: 10px;
|
|
26
|
+
left: 10px;
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
#controls > button {
|
|
30
|
+
display: block;
|
|
31
|
+
width: 100%;
|
|
32
|
+
text-align: left;
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
#controls > hr {
|
|
36
|
+
margin: 5px 0;
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
#controls > input, #controls > select {
|
|
40
|
+
width: 100%;
|
|
41
|
+
display: block;
|
|
42
|
+
}
|
|
43
|
+
</style>
|
|
44
|
+
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
45
|
+
<script type="text/javascript" src="./index.js"></script>
|
|
46
|
+
</head>
|
|
47
|
+
<body>
|
|
48
|
+
<div id='controls'>
|
|
49
|
+
<h3>Source</h3>
|
|
50
|
+
<input type='text' id='url' placeholder='url' />
|
|
51
|
+
<input type='text' id='assemblyId' placeholder='assembly id' />
|
|
52
|
+
<select id='format'>
|
|
53
|
+
<option value='mmcif' selected>mmCIF</option>
|
|
54
|
+
<option value='pdb'>PDB</option>
|
|
55
|
+
</select>
|
|
56
|
+
</div>
|
|
57
|
+
<div id="app"></div>
|
|
58
|
+
<script>
|
|
59
|
+
function $(id) { return document.getElementById(id); }
|
|
60
|
+
|
|
61
|
+
var pdbId = '1grm', assemblyId= '1';
|
|
62
|
+
var url = 'https://www.ebi.ac.uk/pdbe/static/entry/' + pdbId + '_updated.cif';
|
|
63
|
+
var format = 'mmcif';
|
|
64
|
+
|
|
65
|
+
$('url').value = url;
|
|
66
|
+
$('url').onchange = function (e) { url = e.target.value; }
|
|
67
|
+
$('assemblyId').value = assemblyId;
|
|
68
|
+
$('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
|
|
69
|
+
$('format').value = format;
|
|
70
|
+
$('format').onchange = function (e) { format = e.target.value; }
|
|
71
|
+
|
|
72
|
+
BasicMolStarWrapper.init('app' /** or document.getElementById('app') */).then(() => {
|
|
73
|
+
BasicMolStarWrapper.setBackground(0xffffff);
|
|
74
|
+
});
|
|
75
|
+
|
|
76
|
+
addControl('Load Asym Unit', () => BasicMolStarWrapper.load({ url: url, format: format }));
|
|
77
|
+
addControl('Load Assembly', () => BasicMolStarWrapper.load({ url: url, format: format, assemblyId: assemblyId }));
|
|
78
|
+
|
|
79
|
+
addSeparator();
|
|
80
|
+
|
|
81
|
+
addHeader('Camera');
|
|
82
|
+
addControl('Toggle Spin', () => BasicMolStarWrapper.toggleSpin());
|
|
83
|
+
|
|
84
|
+
addSeparator();
|
|
85
|
+
|
|
86
|
+
addHeader('Animation');
|
|
87
|
+
|
|
88
|
+
// adjust this number to make the animation faster or slower
|
|
89
|
+
// requires to "restart" the animation if changed
|
|
90
|
+
BasicMolStarWrapper.animate.modelIndex.targetFps = 30;
|
|
91
|
+
|
|
92
|
+
addControl('Play To End', () => BasicMolStarWrapper.animate.modelIndex.onceForward());
|
|
93
|
+
addControl('Play To Start', () => BasicMolStarWrapper.animate.modelIndex.onceBackward());
|
|
94
|
+
addControl('Play Palindrome', () => BasicMolStarWrapper.animate.modelIndex.palindrome());
|
|
95
|
+
addControl('Play Loop', () => BasicMolStarWrapper.animate.modelIndex.loop());
|
|
96
|
+
addControl('Stop', () => BasicMolStarWrapper.animate.modelIndex.stop());
|
|
97
|
+
|
|
98
|
+
addHeader('Misc');
|
|
99
|
+
|
|
100
|
+
addControl('Apply Stripes', () => BasicMolStarWrapper.coloring.applyStripes());
|
|
101
|
+
addControl('Apply Custom Theme', () => BasicMolStarWrapper.coloring.applyCustomTheme());
|
|
102
|
+
addControl('Default Coloring', () => BasicMolStarWrapper.coloring.applyDefault());
|
|
103
|
+
|
|
104
|
+
addHeader('Interactivity');
|
|
105
|
+
addControl('Highlight seq_id=7', () => BasicMolStarWrapper.interactivity.highlightOn());
|
|
106
|
+
addControl('Clear Highlight', () => BasicMolStarWrapper.interactivity.clearHighlight());
|
|
107
|
+
|
|
108
|
+
addHeader('Tests');
|
|
109
|
+
|
|
110
|
+
addControl('Static Superposition', () => BasicMolStarWrapper.tests.staticSuperposition());
|
|
111
|
+
addControl('Dynamic Superposition', () => BasicMolStarWrapper.tests.dynamicSuperposition());
|
|
112
|
+
addControl('Validation Tooltip', () => BasicMolStarWrapper.tests.toggleValidationTooltip());
|
|
113
|
+
|
|
114
|
+
addControl('Show Toasts', () => BasicMolStarWrapper.tests.showToasts());
|
|
115
|
+
addControl('Hide Toasts', () => BasicMolStarWrapper.tests.hideToasts());
|
|
116
|
+
|
|
117
|
+
////////////////////////////////////////////////////////
|
|
118
|
+
|
|
119
|
+
function addControl(label, action) {
|
|
120
|
+
var btn = document.createElement('button');
|
|
121
|
+
btn.onclick = action;
|
|
122
|
+
btn.innerText = label;
|
|
123
|
+
$('controls').appendChild(btn);
|
|
124
|
+
}
|
|
125
|
+
|
|
126
|
+
function addSeparator() {
|
|
127
|
+
var hr = document.createElement('hr');
|
|
128
|
+
$('controls').appendChild(hr);
|
|
129
|
+
}
|
|
130
|
+
|
|
131
|
+
function addHeader(header) {
|
|
132
|
+
var h = document.createElement('h3');
|
|
133
|
+
h.innerText = header;
|
|
134
|
+
$('controls').appendChild(h);
|
|
135
|
+
}
|
|
136
|
+
</script>
|
|
137
|
+
</body>
|
|
138
138
|
</html>
|
|
@@ -1,89 +1,89 @@
|
|
|
1
|
-
<!DOCTYPE html>
|
|
2
|
-
<html lang="en">
|
|
3
|
-
<head>
|
|
4
|
-
<meta charset="utf-8" />
|
|
5
|
-
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
-
<title>Mol* Lighting Demo</title>
|
|
7
|
-
<style>
|
|
8
|
-
* {
|
|
9
|
-
margin: 0;
|
|
10
|
-
padding: 0;
|
|
11
|
-
box-sizing: border-box;
|
|
12
|
-
}
|
|
13
|
-
#app {
|
|
14
|
-
position: absolute;
|
|
15
|
-
width: 100%;
|
|
16
|
-
height: 100%;
|
|
17
|
-
}
|
|
18
|
-
|
|
19
|
-
#controls {
|
|
20
|
-
position: absolute;
|
|
21
|
-
width: 150px;
|
|
22
|
-
bottom: 100px;
|
|
23
|
-
right: 50px;
|
|
24
|
-
z-index: 10;
|
|
25
|
-
font-family: sans-serif;
|
|
26
|
-
font-size: smaller;
|
|
27
|
-
}
|
|
28
|
-
|
|
29
|
-
#controls > button {
|
|
30
|
-
display: block;
|
|
31
|
-
width: 100%;
|
|
32
|
-
text-align: left;
|
|
33
|
-
margin: 5px 0px;
|
|
34
|
-
}
|
|
35
|
-
|
|
36
|
-
#controls > input, #controls > select {
|
|
37
|
-
width: 100%;
|
|
38
|
-
display: block;
|
|
39
|
-
}
|
|
40
|
-
</style>
|
|
41
|
-
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
42
|
-
<script type="text/javascript" src="./index.js"></script>
|
|
43
|
-
</head>
|
|
44
|
-
<body>
|
|
45
|
-
<div id='controls'></div>
|
|
46
|
-
<div id="app"></div>
|
|
47
|
-
<script>
|
|
48
|
-
LightingDemo.init('app').then(() => {
|
|
49
|
-
LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
|
|
50
|
-
});
|
|
51
|
-
|
|
52
|
-
addHeader('Example PDB IDs');
|
|
53
|
-
addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
|
|
54
|
-
addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
|
|
55
|
-
addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
|
|
56
|
-
addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
|
|
57
|
-
|
|
58
|
-
addSeparator()
|
|
59
|
-
|
|
60
|
-
addHeader('Lighting Presets');
|
|
61
|
-
addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
|
|
62
|
-
addControl('Standard', () => LightingDemo.setPreset('standard'));
|
|
63
|
-
addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
|
|
64
|
-
|
|
65
|
-
////////////////////////////////////////////////////////
|
|
66
|
-
|
|
67
|
-
function $(id) { return document.getElementById(id); }
|
|
68
|
-
|
|
69
|
-
function addControl(label, action) {
|
|
70
|
-
var btn = document.createElement('button');
|
|
71
|
-
btn.onclick = action;
|
|
72
|
-
btn.innerText = label;
|
|
73
|
-
$('controls').appendChild(btn);
|
|
74
|
-
}
|
|
75
|
-
|
|
76
|
-
function addSeparator() {
|
|
77
|
-
var hr = document.createElement('br');
|
|
78
|
-
$('controls').appendChild(hr);
|
|
79
|
-
}
|
|
80
|
-
|
|
81
|
-
function addHeader(header) {
|
|
82
|
-
var h = document.createElement('h3');
|
|
83
|
-
h.innerText = header;
|
|
84
|
-
$('controls').appendChild(h);
|
|
85
|
-
}
|
|
86
|
-
</script>
|
|
87
|
-
<!-- __MOLSTAR_ANALYTICS__ -->
|
|
88
|
-
</body>
|
|
1
|
+
<!DOCTYPE html>
|
|
2
|
+
<html lang="en">
|
|
3
|
+
<head>
|
|
4
|
+
<meta charset="utf-8" />
|
|
5
|
+
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
+
<title>Mol* Lighting Demo</title>
|
|
7
|
+
<style>
|
|
8
|
+
* {
|
|
9
|
+
margin: 0;
|
|
10
|
+
padding: 0;
|
|
11
|
+
box-sizing: border-box;
|
|
12
|
+
}
|
|
13
|
+
#app {
|
|
14
|
+
position: absolute;
|
|
15
|
+
width: 100%;
|
|
16
|
+
height: 100%;
|
|
17
|
+
}
|
|
18
|
+
|
|
19
|
+
#controls {
|
|
20
|
+
position: absolute;
|
|
21
|
+
width: 150px;
|
|
22
|
+
bottom: 100px;
|
|
23
|
+
right: 50px;
|
|
24
|
+
z-index: 10;
|
|
25
|
+
font-family: sans-serif;
|
|
26
|
+
font-size: smaller;
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
#controls > button {
|
|
30
|
+
display: block;
|
|
31
|
+
width: 100%;
|
|
32
|
+
text-align: left;
|
|
33
|
+
margin: 5px 0px;
|
|
34
|
+
}
|
|
35
|
+
|
|
36
|
+
#controls > input, #controls > select {
|
|
37
|
+
width: 100%;
|
|
38
|
+
display: block;
|
|
39
|
+
}
|
|
40
|
+
</style>
|
|
41
|
+
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
42
|
+
<script type="text/javascript" src="./index.js"></script>
|
|
43
|
+
</head>
|
|
44
|
+
<body>
|
|
45
|
+
<div id='controls'></div>
|
|
46
|
+
<div id="app"></div>
|
|
47
|
+
<script>
|
|
48
|
+
LightingDemo.init('app').then(() => {
|
|
49
|
+
LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
|
|
50
|
+
});
|
|
51
|
+
|
|
52
|
+
addHeader('Example PDB IDs');
|
|
53
|
+
addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
|
|
54
|
+
addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
|
|
55
|
+
addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
|
|
56
|
+
addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
|
|
57
|
+
|
|
58
|
+
addSeparator()
|
|
59
|
+
|
|
60
|
+
addHeader('Lighting Presets');
|
|
61
|
+
addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
|
|
62
|
+
addControl('Standard', () => LightingDemo.setPreset('standard'));
|
|
63
|
+
addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
|
|
64
|
+
|
|
65
|
+
////////////////////////////////////////////////////////
|
|
66
|
+
|
|
67
|
+
function $(id) { return document.getElementById(id); }
|
|
68
|
+
|
|
69
|
+
function addControl(label, action) {
|
|
70
|
+
var btn = document.createElement('button');
|
|
71
|
+
btn.onclick = action;
|
|
72
|
+
btn.innerText = label;
|
|
73
|
+
$('controls').appendChild(btn);
|
|
74
|
+
}
|
|
75
|
+
|
|
76
|
+
function addSeparator() {
|
|
77
|
+
var hr = document.createElement('br');
|
|
78
|
+
$('controls').appendChild(hr);
|
|
79
|
+
}
|
|
80
|
+
|
|
81
|
+
function addHeader(header) {
|
|
82
|
+
var h = document.createElement('h3');
|
|
83
|
+
h.innerText = header;
|
|
84
|
+
$('controls').appendChild(h);
|
|
85
|
+
}
|
|
86
|
+
</script>
|
|
87
|
+
<!-- __MOLSTAR_ANALYTICS__ -->
|
|
88
|
+
</body>
|
|
89
89
|
</html>
|