molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
  266. package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
  267. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
  268. package/lib/commonjs/mol-gl/shader/marking/edge.frag.js +28 -28
  269. package/lib/commonjs/mol-gl/shader/marking/overlay.frag.js +26 -26
  270. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +2 -2
  271. package/lib/commonjs/mol-gl/shader/mesh.frag.js +66 -63
  272. package/lib/commonjs/mol-gl/shader/mesh.vert.js +49 -49
  273. package/lib/commonjs/mol-gl/shader/outlines.frag.js +95 -95
  274. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
  275. package/lib/commonjs/mol-gl/shader/points.frag.js +60 -56
  276. package/lib/commonjs/mol-gl/shader/points.vert.js +38 -38
  277. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +150 -150
  278. package/lib/commonjs/mol-gl/shader/quad.vert.js +10 -10
  279. package/lib/commonjs/mol-gl/shader/shadows.frag.js +123 -123
  280. package/lib/commonjs/mol-gl/shader/smaa/blend.frag.js +56 -56
  281. package/lib/commonjs/mol-gl/shader/smaa/blend.vert.js +25 -25
  282. package/lib/commonjs/mol-gl/shader/smaa/edges.frag.js +66 -66
  283. package/lib/commonjs/mol-gl/shader/smaa/edges.vert.js +26 -26
  284. package/lib/commonjs/mol-gl/shader/smaa/weights.frag.js +206 -206
  285. package/lib/commonjs/mol-gl/shader/smaa/weights.vert.js +32 -32
  286. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +2 -2
  287. package/lib/commonjs/mol-gl/shader/spheres.frag.js +149 -143
  288. package/lib/commonjs/mol-gl/shader/spheres.vert.js +132 -132
  289. package/lib/commonjs/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
  290. package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +99 -100
  291. package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +3 -2
  292. package/lib/commonjs/mol-gl/shader/ssao.frag.js +213 -174
  293. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
  294. package/lib/commonjs/mol-gl/shader/text.frag.js +86 -84
  295. package/lib/commonjs/mol-gl/shader/text.vert.js +85 -85
  296. package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.js +46 -46
  297. package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
  298. package/lib/commonjs/mol-gl/shader-code.js +24 -18
  299. package/lib/commonjs/mol-gl/webgl/compat.js +12 -12
  300. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
  301. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  302. package/lib/commonjs/mol-io/common/binary-cif/array-encoder.d.ts +1 -1
  303. package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +5 -2
  304. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  305. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  306. package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +4 -4
  307. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  308. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  309. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  310. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
  311. package/lib/commonjs/mol-io/reader/cif.d.ts +1 -1
  312. package/lib/commonjs/mol-io/writer/cif/encoder/binary.d.ts +1 -1
  313. package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -2
  314. package/lib/commonjs/mol-math/linear-algebra/3d/mat3.d.ts +3 -1
  315. package/lib/commonjs/mol-math/linear-algebra/3d/mat3.js +8 -1
  316. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
  317. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +20 -0
  318. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
  319. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
  320. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
  321. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +1 -1
  322. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
  323. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
  324. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
  325. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
  326. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  327. package/lib/commonjs/mol-model/structure/structure/unit.js +5 -2
  328. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
  329. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +118 -118
  330. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +2 -2
  331. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
  332. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
  333. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
  334. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
  335. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
  336. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
  337. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +6 -6
  338. package/lib/commonjs/mol-plugin/behavior/dynamic/camera.d.ts +3 -3
  339. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.d.ts +1 -1
  340. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.d.ts +1 -1
  341. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.d.ts +1 -1
  342. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.d.ts +1 -1
  343. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.d.ts +1 -1
  344. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.d.ts +1 -1
  345. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.d.ts +1 -1
  346. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -4
  347. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  348. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
  349. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -2
  350. package/lib/commonjs/mol-plugin/commands.d.ts +1 -208
  351. package/lib/commonjs/mol-plugin/config.d.ts +5 -0
  352. package/lib/commonjs/mol-plugin/context.d.ts +2 -2
  353. package/lib/commonjs/mol-plugin/state.d.ts +6 -6
  354. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +3 -3
  355. package/lib/commonjs/mol-plugin-state/actions/structure.js +3 -5
  356. package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +1 -1
  357. package/lib/commonjs/mol-plugin-state/builder/data.d.ts +4 -4
  358. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +27 -27
  359. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
  360. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +42 -42
  361. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +4 -4
  362. package/lib/commonjs/mol-plugin-state/builder/structure.d.ts +7 -7
  363. package/lib/commonjs/mol-plugin-state/formats/coordinates.d.ts +8 -8
  364. package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +8 -8
  365. package/lib/commonjs/mol-plugin-state/formats/topology.d.ts +12 -12
  366. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +33 -33
  367. package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
  368. package/lib/commonjs/mol-plugin-state/helpers/structure-emissive.js +69 -0
  369. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  370. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +3 -1
  371. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +9 -1
  372. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
  373. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +32 -19
  374. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +1 -1
  375. package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.d.ts +1 -1
  376. package/lib/commonjs/mol-plugin-state/objects.d.ts +32 -32
  377. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +33 -8
  378. package/lib/commonjs/mol-plugin-state/transforms/representation.js +121 -6
  379. package/lib/commonjs/mol-plugin-state/transforms/shape.d.ts +1 -1
  380. package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +16 -8
  381. package/lib/commonjs/mol-plugin-state/transforms/volume.js +51 -2
  382. package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -2
  383. package/lib/commonjs/mol-plugin-ui/state/update-transform.d.ts +3 -3
  384. package/lib/commonjs/mol-repr/representation.d.ts +6 -2
  385. package/lib/commonjs/mol-repr/representation.js +12 -2
  386. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
  387. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -0
  388. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
  389. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -0
  390. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -0
  391. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
  392. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
  393. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
  394. package/lib/commonjs/mol-repr/structure/complex-representation.d.ts +1 -1
  395. package/lib/commonjs/mol-repr/structure/complex-representation.js +7 -1
  396. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +8 -1
  397. package/lib/commonjs/mol-repr/structure/complex-visual.js +5 -1
  398. package/lib/commonjs/mol-repr/structure/params.d.ts +8 -0
  399. package/lib/commonjs/mol-repr/structure/registry.d.ts +14 -0
  400. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  401. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  402. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  403. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  404. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  405. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  406. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  407. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +3 -0
  408. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  409. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  410. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
  411. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  412. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
  413. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
  414. package/lib/commonjs/mol-repr/structure/units-representation.d.ts +1 -1
  415. package/lib/commonjs/mol-repr/structure/units-representation.js +9 -3
  416. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +9 -1
  417. package/lib/commonjs/mol-repr/structure/units-visual.js +5 -1
  418. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  419. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  420. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  421. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  422. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  423. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  424. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  425. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  426. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  427. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  428. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  429. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  430. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  431. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  432. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  433. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +1 -0
  434. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  435. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  436. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  437. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  438. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  439. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  440. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  441. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  442. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  443. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  444. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  445. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  446. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  447. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  448. package/lib/commonjs/mol-repr/visual.d.ts +6 -1
  449. package/lib/commonjs/mol-repr/visual.js +55 -1
  450. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -0
  451. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +6 -0
  452. package/lib/commonjs/mol-repr/volume/registry.d.ts +4 -0
  453. package/lib/commonjs/mol-repr/volume/representation.d.ts +2 -1
  454. package/lib/commonjs/mol-repr/volume/representation.js +9 -2
  455. package/lib/commonjs/mol-repr/volume/segment.d.ts +5 -0
  456. package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -0
  457. package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +3 -3
  458. package/lib/commonjs/mol-state/tree/immutable.d.ts +1 -1
  459. package/lib/commonjs/mol-state/tree/transient.d.ts +2 -2
  460. package/lib/commonjs/mol-theme/color/external-volume.d.ts +3 -1
  461. package/lib/commonjs/mol-theme/color/external-volume.js +8 -2
  462. package/lib/commonjs/mol-theme/color.d.ts +1 -0
  463. package/lib/commonjs/mol-theme/emissive.d.ts +40 -0
  464. package/lib/commonjs/mol-theme/emissive.js +137 -0
  465. package/lib/commonjs/mol-theme/substance.d.ts +1 -1
  466. package/lib/commonjs/mol-theme/substance.js +2 -2
  467. package/lib/commonjs/mol-theme/transparency.d.ts +0 -1
  468. package/lib/commonjs/mol-util/input/input-observer.js +2 -0
  469. package/lib/commonjs/mol-util/set.d.ts +1 -1
  470. package/lib/commonjs/mol-util/set.js +17 -1
  471. package/lib/commonjs/servers/common/swagger-ui/indexTemplate.js +66 -66
  472. package/lib/commonjs/servers/volume/config.js +5 -5
  473. package/lib/examples/alpha-orbitals/example-data.js +160 -160
  474. package/lib/examples/alpha-orbitals/index.html +72 -72
  475. package/lib/examples/basic-wrapper/index.html +137 -137
  476. package/lib/examples/lighting/index.html +88 -88
  477. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  478. package/lib/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  479. package/lib/extensions/alpha-orbitals/transforms.d.ts +2 -2
  480. package/lib/extensions/anvil/behavior.d.ts +10 -9
  481. package/lib/extensions/anvil/representation.d.ts +5 -0
  482. package/lib/extensions/assembly-symmetry/behavior.d.ts +2 -1
  483. package/lib/extensions/assembly-symmetry/prop.js +24 -24
  484. package/lib/extensions/assembly-symmetry/representation.d.ts +1 -0
  485. package/lib/extensions/backgrounds/index.d.ts +2 -2
  486. package/lib/extensions/backgrounds/index.js +2 -1
  487. package/lib/extensions/dnatco/behavior.d.ts +1 -1
  488. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  489. package/lib/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  490. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  491. package/lib/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  492. package/lib/extensions/dnatco/ntc-tube/behavior.js +5 -5
  493. package/lib/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  494. package/lib/extensions/g3d/format.d.ts +6 -6
  495. package/lib/extensions/geo-export/glb-exporter.d.ts +1 -1
  496. package/lib/extensions/geo-export/glb-exporter.js +6 -4
  497. package/lib/extensions/geo-export/index.d.ts +1 -1
  498. package/lib/extensions/geo-export/usdz-exporter.js +41 -41
  499. package/lib/extensions/meshes/mesh-extension.d.ts +2 -3
  500. package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  501. package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  502. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  503. package/lib/extensions/model-export/index.d.ts +1 -1
  504. package/lib/extensions/mp4-export/index.d.ts +1 -1
  505. package/lib/extensions/mvs/behavior.d.ts +1 -1
  506. package/lib/extensions/mvs/camera.d.ts +2 -0
  507. package/lib/extensions/mvs/camera.js +27 -1
  508. package/lib/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  509. package/lib/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  510. package/lib/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  511. package/lib/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  512. package/lib/extensions/mvs/components/formats.d.ts +6 -4
  513. package/lib/extensions/mvs/components/formats.js +2 -1
  514. package/lib/extensions/mvs/load-helpers.d.ts +1 -1
  515. package/lib/extensions/mvs/load.d.ts +2 -0
  516. package/lib/extensions/mvs/load.js +13 -7
  517. package/lib/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  518. package/lib/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  519. package/lib/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  520. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
  521. package/lib/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  522. package/lib/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  523. package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  524. package/lib/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  525. package/lib/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  526. package/lib/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  527. package/lib/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  528. package/lib/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  529. package/lib/extensions/volumes-and-segmentations/index.d.ts +1 -1
  530. package/lib/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  531. package/lib/extensions/wwpdb/ccd/representation.d.ts +4 -4
  532. package/lib/extensions/zenodo/index.d.ts +1 -1
  533. package/lib/mol-canvas3d/canvas3d.d.ts +14 -2
  534. package/lib/mol-canvas3d/canvas3d.js +2 -2
  535. package/lib/mol-canvas3d/controls/trackball.js +1 -1
  536. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  537. package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
  538. package/lib/mol-canvas3d/passes/background.d.ts +6 -1
  539. package/lib/mol-canvas3d/passes/background.js +14 -2
  540. package/lib/mol-canvas3d/passes/bloom.d.ts +37 -0
  541. package/lib/mol-canvas3d/passes/bloom.js +268 -0
  542. package/lib/mol-canvas3d/passes/dpoit.js +4 -2
  543. package/lib/mol-canvas3d/passes/draw.d.ts +11 -7
  544. package/lib/mol-canvas3d/passes/draw.js +30 -4
  545. package/lib/mol-canvas3d/passes/image.d.ts +6 -0
  546. package/lib/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  547. package/lib/mol-canvas3d/passes/postprocessing.js +33 -39
  548. package/lib/mol-geo/geometry/base.d.ts +3 -1
  549. package/lib/mol-geo/geometry/base.js +4 -1
  550. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  551. package/lib/mol-geo/geometry/cylinders/cylinders.js +4 -1
  552. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  553. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  554. package/lib/mol-geo/geometry/emissive-data.d.ts +26 -0
  555. package/lib/mol-geo/geometry/emissive-data.js +72 -0
  556. package/lib/mol-geo/geometry/image/image.d.ts +2 -1
  557. package/lib/mol-geo/geometry/image/image.js +4 -1
  558. package/lib/mol-geo/geometry/lines/lines.d.ts +3 -2
  559. package/lib/mol-geo/geometry/lines/lines.js +4 -1
  560. package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  561. package/lib/mol-geo/geometry/mesh/color-smoothing.js +34 -1
  562. package/lib/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  563. package/lib/mol-geo/geometry/mesh/mesh.js +11 -4
  564. package/lib/mol-geo/geometry/points/points.d.ts +3 -2
  565. package/lib/mol-geo/geometry/points/points.js +4 -1
  566. package/lib/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  567. package/lib/mol-geo/geometry/spheres/spheres.js +7 -3
  568. package/lib/mol-geo/geometry/text/text.d.ts +2 -1
  569. package/lib/mol-geo/geometry/text/text.js +4 -1
  570. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  571. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +32 -1
  572. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  573. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  574. package/lib/mol-geo/util/location-iterator.d.ts +5 -2
  575. package/lib/mol-geo/util/location-iterator.js +8 -3
  576. package/lib/mol-gl/renderable/cylinders.d.ts +10 -0
  577. package/lib/mol-gl/renderable/direct-volume.d.ts +10 -0
  578. package/lib/mol-gl/renderable/image.d.ts +10 -0
  579. package/lib/mol-gl/renderable/lines.d.ts +10 -0
  580. package/lib/mol-gl/renderable/mesh.d.ts +10 -0
  581. package/lib/mol-gl/renderable/points.d.ts +10 -0
  582. package/lib/mol-gl/renderable/schema.d.ts +24 -1
  583. package/lib/mol-gl/renderable/schema.js +14 -1
  584. package/lib/mol-gl/renderable/spheres.d.ts +10 -0
  585. package/lib/mol-gl/renderable/text.d.ts +10 -0
  586. package/lib/mol-gl/renderable/texture-mesh.d.ts +10 -0
  587. package/lib/mol-gl/renderable.d.ts +1 -1
  588. package/lib/mol-gl/renderable.js +2 -2
  589. package/lib/mol-gl/renderer.d.ts +2 -1
  590. package/lib/mol-gl/renderer.js +58 -49
  591. package/lib/mol-gl/scene.d.ts +3 -1
  592. package/lib/mol-gl/scene.js +26 -1
  593. package/lib/mol-gl/shader/background.frag.d.ts +1 -1
  594. package/lib/mol-gl/shader/background.frag.js +95 -94
  595. package/lib/mol-gl/shader/background.vert.js +11 -11
  596. package/lib/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  597. package/lib/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  598. package/lib/mol-gl/shader/bloom/blur.frag.js +29 -0
  599. package/lib/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  600. package/lib/mol-gl/shader/bloom/composite.frag.js +34 -0
  601. package/lib/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  602. package/lib/mol-gl/shader/bloom/luminosity.frag.js +53 -0
  603. package/lib/mol-gl/shader/cas.frag.js +144 -144
  604. package/lib/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  605. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  606. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  607. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  608. package/lib/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  609. package/lib/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  610. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  611. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  612. package/lib/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  613. package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  614. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  615. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  616. package/lib/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  617. package/lib/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  618. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  619. package/lib/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  620. package/lib/mol-gl/shader/chunks/check-transparency.glsl.js +17 -0
  621. package/lib/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  622. package/lib/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  623. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  624. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  625. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  626. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  627. package/lib/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  628. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  629. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  630. package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  631. package/lib/mol-gl/shader/chunks/common.glsl.js +234 -234
  632. package/lib/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  633. package/lib/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  634. package/lib/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  635. package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  636. package/lib/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  637. package/lib/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  638. package/lib/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  639. package/lib/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  640. package/lib/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  641. package/lib/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  642. package/lib/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  643. package/lib/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  644. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  645. package/lib/mol-gl/shader/compose.frag.js +12 -12
  646. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  647. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  648. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  649. package/lib/mol-gl/shader/copy.frag.js +11 -11
  650. package/lib/mol-gl/shader/cylinders.frag.d.ts +2 -2
  651. package/lib/mol-gl/shader/cylinders.frag.js +267 -264
  652. package/lib/mol-gl/shader/cylinders.vert.js +89 -89
  653. package/lib/mol-gl/shader/depth-merge.frag.js +23 -23
  654. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  655. package/lib/mol-gl/shader/direct-volume.frag.js +362 -356
  656. package/lib/mol-gl/shader/direct-volume.vert.js +41 -41
  657. package/lib/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  658. package/lib/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  659. package/lib/mol-gl/shader/fxaa.frag.js +228 -228
  660. package/lib/mol-gl/shader/gaussian-density.frag.js +49 -49
  661. package/lib/mol-gl/shader/gaussian-density.vert.js +27 -27
  662. package/lib/mol-gl/shader/hi-z.frag.js +18 -18
  663. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  664. package/lib/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  665. package/lib/mol-gl/shader/image.frag.d.ts +2 -2
  666. package/lib/mol-gl/shader/image.frag.js +170 -161
  667. package/lib/mol-gl/shader/image.vert.js +21 -21
  668. package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
  669. package/lib/mol-gl/shader/lines.frag.js +43 -40
  670. package/lib/mol-gl/shader/lines.vert.js +117 -117
  671. package/lib/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
  672. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
  673. package/lib/mol-gl/shader/marking/edge.frag.js +28 -28
  674. package/lib/mol-gl/shader/marking/overlay.frag.js +26 -26
  675. package/lib/mol-gl/shader/mesh.frag.d.ts +2 -2
  676. package/lib/mol-gl/shader/mesh.frag.js +66 -63
  677. package/lib/mol-gl/shader/mesh.vert.js +49 -49
  678. package/lib/mol-gl/shader/outlines.frag.js +95 -95
  679. package/lib/mol-gl/shader/points.frag.d.ts +2 -2
  680. package/lib/mol-gl/shader/points.frag.js +60 -56
  681. package/lib/mol-gl/shader/points.vert.js +38 -38
  682. package/lib/mol-gl/shader/postprocessing.frag.js +150 -150
  683. package/lib/mol-gl/shader/quad.vert.js +10 -10
  684. package/lib/mol-gl/shader/shadows.frag.js +123 -123
  685. package/lib/mol-gl/shader/smaa/blend.frag.js +56 -56
  686. package/lib/mol-gl/shader/smaa/blend.vert.js +25 -25
  687. package/lib/mol-gl/shader/smaa/edges.frag.js +66 -66
  688. package/lib/mol-gl/shader/smaa/edges.vert.js +26 -26
  689. package/lib/mol-gl/shader/smaa/weights.frag.js +206 -206
  690. package/lib/mol-gl/shader/smaa/weights.vert.js +32 -32
  691. package/lib/mol-gl/shader/spheres.frag.d.ts +2 -2
  692. package/lib/mol-gl/shader/spheres.frag.js +149 -143
  693. package/lib/mol-gl/shader/spheres.vert.js +132 -132
  694. package/lib/mol-gl/shader/ssao-blur.frag.d.ts +3 -2
  695. package/lib/mol-gl/shader/ssao-blur.frag.js +99 -100
  696. package/lib/mol-gl/shader/ssao.frag.d.ts +3 -2
  697. package/lib/mol-gl/shader/ssao.frag.js +213 -174
  698. package/lib/mol-gl/shader/text.frag.d.ts +2 -2
  699. package/lib/mol-gl/shader/text.frag.js +86 -84
  700. package/lib/mol-gl/shader/text.vert.js +85 -85
  701. package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
  702. package/lib/mol-gl/shader-code.d.ts +1 -1
  703. package/lib/mol-gl/shader-code.js +24 -18
  704. package/lib/mol-gl/webgl/compat.js +12 -12
  705. package/lib/mol-gl/webgl/render-item.d.ts +3 -2
  706. package/lib/mol-gl/webgl/render-item.js +1 -1
  707. package/lib/mol-io/common/binary-cif/array-encoder.d.ts +1 -1
  708. package/lib/mol-io/common/binary-cif/array-encoder.js +5 -2
  709. package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
  710. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  711. package/lib/mol-io/reader/cif/schema/ccd-extras.d.ts +4 -4
  712. package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  713. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  714. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  715. package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
  716. package/lib/mol-io/reader/cif.d.ts +1 -1
  717. package/lib/mol-io/writer/cif/encoder/binary.d.ts +1 -1
  718. package/lib/mol-io/writer/cif/encoder/binary.js +10 -2
  719. package/lib/mol-math/linear-algebra/3d/mat3.d.ts +3 -1
  720. package/lib/mol-math/linear-algebra/3d/mat3.js +8 -1
  721. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
  722. package/lib/mol-math/linear-algebra/3d/vec3.js +20 -0
  723. package/lib/mol-model/structure/model/types/saccharides.js +1 -1
  724. package/lib/mol-model/structure/structure/properties.d.ts +2 -2
  725. package/lib/mol-model/structure/structure/unit/bonds/data.d.ts +9 -6
  726. package/lib/mol-model/structure/structure/unit/bonds/data.js +1 -1
  727. package/lib/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
  728. package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +7 -4
  729. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
  730. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +10 -6
  731. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  732. package/lib/mol-model/structure/structure/unit.js +5 -2
  733. package/lib/mol-model-formats/shape/ply.d.ts +2 -0
  734. package/lib/mol-model-formats/structure/basic/schema.d.ts +118 -118
  735. package/lib/mol-model-formats/structure/common/component.d.ts +2 -2
  736. package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +4 -1
  737. package/lib/mol-model-formats/structure/property/bonds/index-pair.js +6 -3
  738. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
  739. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
  740. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
  741. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
  742. package/lib/mol-plugin/behavior/behavior.d.ts +6 -6
  743. package/lib/mol-plugin/behavior/dynamic/camera.d.ts +3 -3
  744. package/lib/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.d.ts +1 -1
  745. package/lib/mol-plugin/behavior/dynamic/custom-props/computed/interactions.d.ts +1 -1
  746. package/lib/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.d.ts +1 -1
  747. package/lib/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.d.ts +1 -1
  748. package/lib/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.d.ts +1 -1
  749. package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.d.ts +1 -1
  750. package/lib/mol-plugin/behavior/dynamic/custom-props/structure-info.d.ts +1 -1
  751. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -4
  752. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  753. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
  754. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -2
  755. package/lib/mol-plugin/commands.d.ts +1 -208
  756. package/lib/mol-plugin/config.d.ts +5 -0
  757. package/lib/mol-plugin/context.d.ts +2 -2
  758. package/lib/mol-plugin/state.d.ts +6 -6
  759. package/lib/mol-plugin/version.js +2 -2
  760. package/lib/mol-plugin-state/actions/structure.d.ts +3 -3
  761. package/lib/mol-plugin-state/actions/structure.js +3 -5
  762. package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
  763. package/lib/mol-plugin-state/builder/data.d.ts +4 -4
  764. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +27 -27
  765. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
  766. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +42 -42
  767. package/lib/mol-plugin-state/builder/structure/representation.d.ts +4 -4
  768. package/lib/mol-plugin-state/builder/structure.d.ts +7 -7
  769. package/lib/mol-plugin-state/formats/coordinates.d.ts +8 -8
  770. package/lib/mol-plugin-state/formats/shape.d.ts +8 -8
  771. package/lib/mol-plugin-state/formats/topology.d.ts +12 -12
  772. package/lib/mol-plugin-state/formats/volume.d.ts +33 -33
  773. package/lib/mol-plugin-state/helpers/structure-emissive.d.ts +12 -0
  774. package/lib/mol-plugin-state/helpers/structure-emissive.js +64 -0
  775. package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  776. package/lib/mol-plugin-state/manager/structure/component.d.ts +3 -1
  777. package/lib/mol-plugin-state/manager/structure/component.js +9 -1
  778. package/lib/mol-plugin-state/manager/structure/measurement.d.ts +341 -9
  779. package/lib/mol-plugin-state/manager/structure/measurement.js +32 -19
  780. package/lib/mol-plugin-state/manager/structure/selection.d.ts +1 -1
  781. package/lib/mol-plugin-state/manager/volume/hierarchy.d.ts +1 -1
  782. package/lib/mol-plugin-state/objects.d.ts +32 -32
  783. package/lib/mol-plugin-state/transforms/representation.d.ts +33 -8
  784. package/lib/mol-plugin-state/transforms/representation.js +120 -5
  785. package/lib/mol-plugin-state/transforms/shape.d.ts +1 -1
  786. package/lib/mol-plugin-state/transforms/volume.d.ts +16 -8
  787. package/lib/mol-plugin-state/transforms/volume.js +51 -2
  788. package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
  789. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  790. package/lib/mol-plugin-ui/skin/base/components/controls.scss +445 -445
  791. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  792. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  793. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  794. package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
  795. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  796. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  797. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  798. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  799. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  800. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
  801. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  802. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  803. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  804. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  805. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  806. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  807. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  808. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  809. package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
  810. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  811. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  812. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  813. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  814. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  815. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  816. package/lib/mol-plugin-ui/state/apply-action.d.ts +2 -2
  817. package/lib/mol-plugin-ui/state/update-transform.d.ts +3 -3
  818. package/lib/mol-repr/representation.d.ts +6 -2
  819. package/lib/mol-repr/representation.js +12 -2
  820. package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193

There are too many changes on this page to be displayed.

The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.