molstar 4.0.1 → 4.2.0

package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts

@@ -54,11 +54,11 @@ export declare class TrajectoryHierarchyBuilder {
             theme: any;
         }> | undefined;
     }, {
-        model: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-        modelProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-        unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-        structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-        structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+        model: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+        modelProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+        unitcell: import("../../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+        structure: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+        structureProperties: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         representation: any;
     }>;
     private resolveProvider;

package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts

@@ -46,7 +46,7 @@ export declare namespace StructureRepresentationPresetProvider {
     };
     type CommonParams = PD.ValuesFor<typeof CommonParams>;
     function reprBuilder(plugin: PluginContext, params: CommonParams, structure?: Structure): {
-        update: import("../../../mol-state/state/builder").StateBuilder.Root;
+        update: import("../../../mol-state").StateBuilder.Root;
         builder: import("./representation").StructureRepresentationBuilder;
         color: "uniform" | "occupancy" | "element-index" | "element-symbol" | "hydrophobicity" | "shape-group" | "uncertainty" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "entity-id" | "entity-source" | "model-index" | "structure-index" | "unit-index" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "illustrative" | "trajectory-index" | "operator-hkl" | "partial-charge" | "atom-id" | "volume-value" | "volume-segment" | "external-volume" | "cartoon" | undefined;
         symmetryColor: "uniform" | "occupancy" | "element-index" | "element-symbol" | "hydrophobicity" | "shape-group" | "uncertainty" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "entity-id" | "entity-source" | "model-index" | "structure-index" | "unit-index" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "illustrative" | "trajectory-index" | "operator-hkl" | "partial-charge" | "atom-id" | "volume-value" | "volume-segment" | "external-volume" | "cartoon" | undefined;
@@ -287,11 +287,11 @@ type _Result = StructureRepresentationPresetProvider.Result;
 export declare function presetStaticComponent(plugin: PluginContext, structure: StateObjectRef<PluginStateObject.Molecule.Structure>, type: StaticStructureComponentType, params?: {
     label?: string;
     tags?: string[];
-}): Promise<StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined>;
+}): Promise<StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined>;
 export declare function presetSelectionComponent(plugin: PluginContext, structure: StateObjectRef<PluginStateObject.Molecule.Structure>, query: keyof typeof Q, params?: {
     label?: string;
     tags?: string[];
-}): Promise<StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined>;
+}): Promise<StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined>;
 export declare const PresetStructureRepresentations: {
     empty: StructureRepresentationPresetProvider<unknown, {}>;
     auto: StructureRepresentationPresetProvider<{
@@ -312,18 +312,18 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     } | {
         components: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
             branched: undefined;
         };
         representations: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'atomic-detail': StructureRepresentationPresetProvider<{
@@ -345,11 +345,11 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
             branched: undefined;
         };
         representations: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'polymer-cartoon': StructureRepresentationPresetProvider<{
@@ -370,10 +370,10 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'polymer-and-ligand': StructureRepresentationPresetProvider<{
@@ -394,25 +394,25 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'protein-and-nucleic': StructureRepresentationPresetProvider<{
@@ -433,12 +433,12 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'coarse-surface': StructureRepresentationPresetProvider<{
@@ -459,12 +459,12 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
-            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
+            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     illustrative: StructureRepresentationPresetProvider<{
@@ -486,11 +486,11 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
             branched: undefined;
         };
         representations: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     'auto-lod': StructureRepresentationPresetProvider<{
@@ -511,12 +511,12 @@ export declare const PresetStructureRepresentations: {
         representations?: undefined;
     } | {
         components: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            gaussianSurface: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            cartoon: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
-            ballAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            gaussianSurface: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            cartoon: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
+            ballAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
 };

package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts

@@ -33,18 +33,18 @@ export declare class StructureRepresentationBuilder {
         representations?: undefined;
     } | {
         components: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
         };
         representations: {
-            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     } | {
         components: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
             branched: undefined;
         };
         representations: {
-            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
+            all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
         };
     }>;
     resolveProvider(ref: StructureRepresentationPresetProviderRef): StructureRepresentationPresetProvider<unknown, {}>;

package/lib/commonjs/mol-plugin-state/builder/structure.d.ts

@@ -23,22 +23,22 @@ export declare class StructureBuilder {
     readonly representation: StructureRepresentationBuilder;
     parseTrajectory(data: StateObjectRef<SO.Data.Binary | SO.Data.String>, format: BuiltInTrajectoryFormat | TrajectoryFormatProvider): Promise<StateObjectSelector<SO.Molecule.Trajectory>>;
     parseTrajectory(blob: StateObjectRef<SO.Data.Blob>, params: StateTransformer.Params<StateTransforms['Data']['ParseBlob']>): Promise<StateObjectSelector<SO.Molecule.Trajectory>>;
-    createModel(trajectory: StateObjectRef<SO.Molecule.Trajectory>, params?: StateTransformer.Params<StateTransforms['Model']['ModelFromTrajectory']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Molecule.Model, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
-    insertModelProperties(model: StateObjectRef<SO.Molecule.Model>, params?: StateTransformer.Params<StateTransforms['Model']['CustomModelProperties']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Molecule.Model, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
-    tryCreateUnitcell(model: StateObjectRef<SO.Molecule.Model>, params?: StateTransformer.Params<StateTransforms['Representation']['ModelUnitcell3D']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Shape.Representation3D, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>> | undefined;
-    createStructure(modelRef: StateObjectRef<SO.Molecule.Model>, params?: RootStructureDefinition.Params, initialState?: Partial<StateTransform.State>, tags?: string | string[]): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
-    insertStructureProperties(structure: StateObjectRef<SO.Molecule.Structure>, params?: StateTransformer.Params<StateTransforms['Model']['CustomStructureProperties']>): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    createModel(trajectory: StateObjectRef<SO.Molecule.Trajectory>, params?: StateTransformer.Params<StateTransforms['Model']['ModelFromTrajectory']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Molecule.Model, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
+    insertModelProperties(model: StateObjectRef<SO.Molecule.Model>, params?: StateTransformer.Params<StateTransforms['Model']['CustomModelProperties']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Molecule.Model, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
+    tryCreateUnitcell(model: StateObjectRef<SO.Molecule.Model>, params?: StateTransformer.Params<StateTransforms['Representation']['ModelUnitcell3D']>, initialState?: Partial<StateTransform.State>): Promise<StateObjectSelector<SO.Shape.Representation3D, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>> | undefined;
+    createStructure(modelRef: StateObjectRef<SO.Molecule.Model>, params?: RootStructureDefinition.Params, initialState?: Partial<StateTransform.State>, tags?: string | string[]): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
+    insertStructureProperties(structure: StateObjectRef<SO.Molecule.Structure>, params?: StateTransformer.Params<StateTransforms['Model']['CustomStructureProperties']>): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
     isComponentTransform(cell: StateObjectCell): boolean;
     /** returns undefined if the component is empty/null */
     tryCreateComponent(structure: StateObjectRef<SO.Molecule.Structure>, params: StructureComponentParams, key: string, tags?: string[]): Promise<StateObjectSelector<SO.Molecule.Structure> | undefined>;
     tryCreateComponentFromExpression(structure: StateObjectRef<SO.Molecule.Structure>, expression: Expression, key: string, params?: {
         label?: string;
         tags?: string[];
-    }): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined>;
+    }): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined>;
     tryCreateComponentStatic(structure: StateObjectRef<SO.Molecule.Structure>, type: StaticStructureComponentType, params?: {
         label?: string;
         tags?: string[];
-    }): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined>;
+    }): Promise<StateObjectSelector<SO.Molecule.Structure, StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>> | undefined>;
     tryCreateComponentFromSelection(structure: StateObjectRef<SO.Molecule.Structure>, selection: StructureSelectionQuery, key: string, params?: {
         label?: string;
         tags?: string[];

package/lib/commonjs/mol-plugin-state/formats/coordinates.d.ts

@@ -11,7 +11,7 @@ declare const DcdProvider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 };
 type DcdProvider = typeof DcdProvider;
 export { XtcProvider };
@@ -20,7 +20,7 @@ declare const XtcProvider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 };
 type XtcProvider = typeof XtcProvider;
 export { TrrProvider };
@@ -29,7 +29,7 @@ declare const TrrProvider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 };
 type TrrProvider = typeof TrrProvider;
 export { NctrajProvider };
@@ -38,7 +38,7 @@ declare const NctrajProvider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 };
 type NctrajProvider = typeof NctrajProvider;
 export type CoordinatesProvider = DcdProvider | XtcProvider | TrrProvider;
@@ -47,24 +47,24 @@ export declare const BuiltInCoordinatesFormats: readonly [readonly ["dcd", {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 }], readonly ["xtc", {
     label: string;
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 }], readonly ["trr", {
     label: string;
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 }], readonly ["nctraj", {
     label: string;
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 }]];
 export type BuiltInCoordinatesFormat = (typeof BuiltInCoordinatesFormats)[number][0];

package/lib/commonjs/mol-plugin-state/formats/shape.d.ts

@@ -14,15 +14,15 @@ export declare const PlyProvider: {
     category: string;
     stringExtensions: string[];
     parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-            transforms: import("../../mol-math/linear-algebra/3d/mat4").Mat4[] | undefined;
+        format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            transforms: import("../../mol-math/linear-algebra").Mat4[] | undefined;
             label: string | undefined;
         }>>>;
     }>;
     visuals(plugin: PluginContext, data: {
         shape: StateObjectRef<PluginStateObject.Shape.Provider>;
-    }): Promise<import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    }): Promise<import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 };
 export declare const BuiltInShapeFormats: readonly [readonly ["ply", {
     label: string;
@@ -30,14 +30,14 @@ export declare const BuiltInShapeFormats: readonly [readonly ["ply", {
     category: string;
     stringExtensions: string[];
     parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
-            transforms: import("../../mol-math/linear-algebra/3d/mat4").Mat4[] | undefined;
+        format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            transforms: import("../../mol-math/linear-algebra").Mat4[] | undefined;
             label: string | undefined;
         }>>>;
     }>;
     visuals(plugin: PluginContext, data: {
         shape: StateObjectRef<PluginStateObject.Shape.Provider>;
-    }): Promise<import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    }): Promise<import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state").StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>>;
 }]];
 export type BuildInShapeFormat = (typeof BuiltInShapeFormats)[number][0];

package/lib/commonjs/mol-plugin-state/formats/topology.d.ts

@@ -12,8 +12,8 @@ declare const PsfProvider: {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 };
 type PsfProvider = typeof PsfProvider;
@@ -24,8 +24,8 @@ declare const PrmtopProvider: {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Prmtop, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Prmtop, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 };
 type PrmtopProvider = typeof PrmtopProvider;
@@ -36,8 +36,8 @@ declare const TopProvider: {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Top, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Top, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Top, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Top, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Top, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Top, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 };
 type TopProvider = typeof TopProvider;
@@ -48,8 +48,8 @@ export declare const BuiltInTopologyFormats: readonly [readonly ["psf", {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 }], readonly ["prmtop", {
     label: string;
@@ -57,8 +57,8 @@ export declare const BuiltInTopologyFormats: readonly [readonly ["psf", {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Prmtop, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Prmtop, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Prmtop, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 }], readonly ["top", {
     label: string;
@@ -66,8 +66,8 @@ export declare const BuiltInTopologyFormats: readonly [readonly ["psf", {
     category: string;
     stringExtensions: string[];
     parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
-        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Top, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Top, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
-        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Top, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Top, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Top, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
+        topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state").StateTransformer<import("../objects").PluginStateObject.Format.Top, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
 }]];
 export type BuiltInTopologyFormat = (typeof BuiltInTopologyFormats)[number][0];