molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
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  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193
@@ -32,8 +32,8 @@ export declare const ChemicalCompontentTrajectoryHierarchyPreset: TrajectoryHier
32
32
  models?: undefined;
33
33
  structures?: undefined;
34
34
  } | {
35
- models: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>[];
36
- structures: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>[];
35
+ models: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Model, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>[];
36
+ structures: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>[];
37
37
  }>;
38
38
  export declare const ChemicalComponentPreset: StructureRepresentationPresetProvider<{
39
39
  aromaticBonds: boolean;
@@ -56,9 +56,9 @@ export declare const ChemicalComponentPreset: StructureRepresentationPresetProvi
56
56
  representations?: undefined;
57
57
  } | {
58
58
  components: {
59
- [x: string]: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
59
+ [x: string]: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>> | undefined;
60
60
  };
61
61
  representations: {
62
- [x: string]: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state/transformer").StateTransformer<import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, import("../../../mol-state/object").StateObject<any, import("../../../mol-state/object").StateObject.Type<any>>, any>>;
62
+ [x: string]: import("../../../mol-state").StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../../mol-state").StateTransformer<import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, import("../../../mol-state").StateObject<any, import("../../../mol-state").StateObject.Type<any>>, any>>;
63
63
  };
64
64
  }>;
@@ -4,4 +4,4 @@
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
6
6
  import { PluginBehavior } from '../../mol-plugin/behavior/behavior';
7
- export declare const ZenodoImport: import("../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
7
+ export declare const ZenodoImport: import("../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
@@ -103,6 +103,12 @@ export declare const Canvas3DParams: {
103
103
  background: PD.Normalize<{
104
104
  variant: any;
105
105
  }>;
106
+ bloom: PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
107
+ strength: any;
108
+ radius: any;
109
+ threshold: any;
110
+ mode: any;
111
+ }>, "on">;
106
112
  }>>;
107
113
  marking: PD.Group<PD.Normalize<{
108
114
  enabled: boolean;
@@ -138,7 +144,6 @@ export declare const Canvas3DParams: {
138
144
  light: PD.Normalize<{
139
145
  inclination: number;
140
146
  azimuth: number;
141
- /** Can be used to create multiple Canvas3D objects */
142
147
  color: import("../mol-util/color").Color;
143
148
  intensity: number;
144
149
  }>[];
@@ -225,6 +230,7 @@ export declare const Canvas3DParams: {
225
230
  quality: any;
226
231
  material: any;
227
232
  clip: any;
233
+ emissive: any;
228
234
  instanceGranularity: any;
229
235
  lod: any;
230
236
  cellSize: any;
@@ -312,6 +318,12 @@ export declare const DefaultCanvas3DParams: PD.Values<{
312
318
  background: PD.Normalize<{
313
319
  variant: any;
314
320
  }>;
321
+ bloom: PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
322
+ strength: any;
323
+ radius: any;
324
+ threshold: any;
325
+ mode: any;
326
+ }>, "on">;
315
327
  }>>;
316
328
  marking: PD.Group<PD.Normalize<{
317
329
  enabled: boolean;
@@ -347,7 +359,6 @@ export declare const DefaultCanvas3DParams: PD.Values<{
347
359
  light: PD.Normalize<{
348
360
  inclination: number;
349
361
  azimuth: number;
350
- /** Can be used to create multiple Canvas3D objects */
351
362
  color: import("../mol-util/color").Color;
352
363
  intensity: number;
353
364
  }>[];
@@ -434,6 +445,7 @@ export declare const DefaultCanvas3DParams: PD.Values<{
434
445
  quality: any;
435
446
  material: any;
436
447
  clip: any;
448
+ emissive: any;
437
449
  instanceGranularity: any;
438
450
  lod: any;
439
451
  cellSize: any;
@@ -247,7 +247,7 @@ var Canvas3D;
247
247
  let forceNextRender = false;
248
248
  let currentTime = 0;
249
249
  updateViewport();
250
- const scene = Scene.create(webgl, ctx.props.transparency);
250
+ const scene = Scene.create(webgl, passes.draw.transparency);
251
251
  function getSceneRadius() {
252
252
  return scene.boundingSphere.radius * p.sceneRadiusFactor;
253
253
  }
@@ -637,7 +637,7 @@ var Canvas3D;
637
637
  }
638
638
  addConsoleStatsProvider(consoleStats);
639
639
  const ctxChangedSub = (_a = ctx.changed) === null || _a === void 0 ? void 0 : _a.subscribe(() => {
640
- scene.setTransparency(ctx.props.transparency);
640
+ scene.setTransparency(passes.draw.transparency);
641
641
  requestDraw();
642
642
  });
643
643
  //
@@ -140,7 +140,7 @@ var TrackballControls;
140
140
  );
141
141
  }
142
142
  function getRotateFactor() {
143
- const aspectRatio = input.width / input.height;
143
+ const aspectRatio = (input.width / input.height) || 1;
144
144
  return p.rotateSpeed * input.pixelRatio * aspectRatio;
145
145
  }
146
146
  const rotAxis = Vec3();
@@ -37,6 +37,7 @@ export declare const HandleHelperParams: {
37
37
  variant: any;
38
38
  objects: any;
39
39
  }>;
40
+ emissive: number;
40
41
  instanceGranularity: boolean;
41
42
  lod: Vec3;
42
43
  cellSize: number;
@@ -39,6 +39,7 @@ export declare const HelperParams: {
39
39
  quality: any;
40
40
  material: any;
41
41
  clip: any;
42
+ emissive: any;
42
43
  instanceGranularity: any;
43
44
  lod: any;
44
45
  cellSize: any;
@@ -76,6 +77,7 @@ export declare const DefaultHelperProps: PD.Values<{
76
77
  quality: any;
77
78
  material: any;
78
79
  clip: any;
80
+ emissive: any;
79
81
  instanceGranularity: any;
80
82
  lod: any;
81
83
  cellSize: any;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -42,6 +42,11 @@ export declare const BackgroundParams: {
42
42
  pz: any;
43
43
  }>, "files">;
44
44
  blur: number;
45
+ rotation: PD.Normalize<{
46
+ x: any;
47
+ y: any;
48
+ z: any;
49
+ }>;
45
50
  }>, "skybox"> | PD.NamedParams<PD.Normalize<{
46
51
  topColor: Color;
47
52
  bottomColor: Color;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2022-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -21,7 +21,9 @@ import { Vec2 } from '../../mol-math/linear-algebra/3d/vec2';
21
21
  import { Color } from '../../mol-util/color';
22
22
  import { Asset } from '../../mol-util/assets';
23
23
  import { Vec4 } from '../../mol-math/linear-algebra/3d/vec4';
24
- import { isPowerOfTwo } from '../../mol-math/misc';
24
+ import { degToRad, isPowerOfTwo } from '../../mol-math/misc';
25
+ import { Mat3 } from '../../mol-math/linear-algebra/3d/mat3';
26
+ import { Euler } from '../../mol-math/linear-algebra/3d/euler';
25
27
  const SharedParams = {
26
28
  opacity: PD.Numeric(1, { min: 0.0, max: 1.0, step: 0.01 }),
27
29
  saturation: PD.Numeric(0, { min: -1, max: 1, step: 0.01 }),
@@ -47,6 +49,11 @@ const SkyboxParams = {
47
49
  }, { isExpanded: true, label: 'Files' }),
48
50
  }),
49
51
  blur: PD.Numeric(0, { min: 0.0, max: 1.0, step: 0.01 }, { description: 'Note, this only works in WebGL2 or when "EXT_shader_texture_lod" is available.' }),
52
+ rotation: PD.Group({
53
+ x: PD.Numeric(0, { min: 0, max: 360, step: 1 }, { immediateUpdate: true }),
54
+ y: PD.Numeric(0, { min: 0, max: 360, step: 1 }, { immediateUpdate: true }),
55
+ z: PD.Numeric(0, { min: 0, max: 360, step: 1 }, { immediateUpdate: true }),
56
+ }),
50
57
  ...SharedParams,
51
58
  };
52
59
  const ImageParams = {
@@ -141,6 +148,9 @@ export class BackgroundPass {
141
148
  Mat4.mul(m, cam.projection, m);
142
149
  Mat4.invert(m, m);
143
150
  ValueCell.update(this.renderable.values.uViewDirectionProjectionInverse, m);
151
+ const r = this.renderable.values.uRotation.ref.value;
152
+ Mat3.fromEuler(r, Euler.create(degToRad(props.rotation.x), degToRad(props.rotation.y), degToRad(props.rotation.z)), 'XYZ');
153
+ ValueCell.update(this.renderable.values.uRotation, r);
144
154
  ValueCell.updateIfChanged(this.renderable.values.uBlur, props.blur);
145
155
  ValueCell.updateIfChanged(this.renderable.values.uOpacity, props.opacity);
146
156
  ValueCell.updateIfChanged(this.renderable.values.uSaturation, props.saturation);
@@ -398,6 +408,7 @@ const BackgroundSchema = {
398
408
  uOpacity: UniformSpec('f'),
399
409
  uSaturation: UniformSpec('f'),
400
410
  uLightness: UniformSpec('f'),
411
+ uRotation: UniformSpec('m3'),
401
412
  dVariant: DefineSpec('string', ['skybox', 'image', 'verticalGradient', 'horizontalGradient', 'radialGradient']),
402
413
  };
403
414
  const SkyboxShaderCode = ShaderCode('background', background_vert, background_frag, {
@@ -423,6 +434,7 @@ function getBackgroundRenderable(ctx, width, height) {
423
434
  uOpacity: ValueCell.create(1),
424
435
  uSaturation: ValueCell.create(0),
425
436
  uLightness: ValueCell.create(0),
437
+ uRotation: ValueCell.create(Mat3.identity()),
426
438
  dVariant: ValueCell.create('skybox'),
427
439
  };
428
440
  const schema = { ...BackgroundSchema };
@@ -0,0 +1,37 @@
1
+ /**
2
+ * Copyright (c) 2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ *
6
+ * Partially adapted from three.js, The MIT License, Copyright © 2010-2024 three.js authors
7
+ */
8
+ import { WebGLContext } from '../../mol-gl/webgl/context';
9
+ import { Texture } from '../../mol-gl/webgl/texture';
10
+ import { ParamDefinition as PD } from '../../mol-util/param-definition';
11
+ import { Viewport } from '../camera/util';
12
+ import { RenderTarget } from '../../mol-gl/webgl/render-target';
13
+ import { PostprocessingProps } from './postprocessing';
14
+ export declare const BloomParams: {
15
+ strength: PD.Numeric;
16
+ radius: PD.Numeric;
17
+ threshold: PD.Numeric;
18
+ mode: PD.Select<"luminosity" | "emissive">;
19
+ };
20
+ export type BloomProps = PD.Values<typeof BloomParams>;
21
+ export declare class BloomPass {
22
+ private webgl;
23
+ static isEnabled(props: PostprocessingProps): boolean;
24
+ readonly emissiveTarget: RenderTarget;
25
+ private readonly luminosityTarget;
26
+ private readonly horizontalBlurTargets;
27
+ private readonly verticalBlurTargets;
28
+ private readonly compositeTarget;
29
+ private readonly luminosityRenderable;
30
+ private readonly blurRenderable;
31
+ private readonly compositeRenderable;
32
+ private readonly copyRenderable;
33
+ constructor(webgl: WebGLContext, width: number, height: number);
34
+ setSize(width: number, height: number): void;
35
+ update(input: Texture, emissive: Texture, depth: Texture, props: BloomProps): void;
36
+ render(viewport: Viewport, target: RenderTarget | undefined): void;
37
+ }
@@ -0,0 +1,268 @@
1
+ /**
2
+ * Copyright (c) 2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ *
6
+ * Partially adapted from three.js, The MIT License, Copyright © 2010-2024 three.js authors
7
+ */
8
+ import { QuadSchema, QuadValues, createCopyRenderable } from '../../mol-gl/compute/util';
9
+ import { createComputeRenderable } from '../../mol-gl/renderable';
10
+ import { TextureSpec, UniformSpec, DefineSpec } from '../../mol-gl/renderable/schema';
11
+ import { ShaderCode } from '../../mol-gl/shader-code';
12
+ import { createComputeRenderItem } from '../../mol-gl/webgl/render-item';
13
+ import { createNullTexture } from '../../mol-gl/webgl/texture';
14
+ import { Vec2, Vec3 } from '../../mol-math/linear-algebra';
15
+ import { ValueCell } from '../../mol-util';
16
+ import { ParamDefinition as PD } from '../../mol-util/param-definition';
17
+ import { quad_vert } from '../../mol-gl/shader/quad.vert';
18
+ import { isTimingMode } from '../../mol-util/debug';
19
+ import { composite_frag } from '../../mol-gl/shader/bloom/composite.frag';
20
+ import { luminosity_frag } from '../../mol-gl/shader/bloom/luminosity.frag';
21
+ import { blur_frag } from '../../mol-gl/shader/bloom/blur.frag';
22
+ import { memoize1 } from '../../mol-util/memoize';
23
+ const MipCount = 5;
24
+ export const BloomParams = {
25
+ strength: PD.Numeric(1, { min: 0, max: 3, step: 0.1 }),
26
+ radius: PD.Numeric(0, { min: 0, max: 1, step: 0.01 }),
27
+ threshold: PD.Numeric(0, { min: 0, max: 1, step: 0.01 }, { description: 'Luminosity threshold', hideIf: p => p.mode === 'emissive' }),
28
+ mode: PD.Select('emissive', [['luminosity', 'Luminosity'], ['emissive', 'Emissive']]),
29
+ };
30
+ export class BloomPass {
31
+ static isEnabled(props) {
32
+ return props.bloom.name === 'on';
33
+ }
34
+ constructor(webgl, width, height) {
35
+ this.webgl = webgl;
36
+ this.horizontalBlurTargets = [];
37
+ this.verticalBlurTargets = [];
38
+ this.emissiveTarget = webgl.createRenderTarget(width, height, true, 'uint8', 'linear', 'rgba');
39
+ this.luminosityTarget = webgl.createRenderTarget(width, height, false, 'uint8', 'linear');
40
+ this.compositeTarget = webgl.createRenderTarget(width, height, false, 'uint8', 'linear');
41
+ let blurWidth = Math.round(width / 2);
42
+ let blurHeight = Math.round(height / 2);
43
+ for (let i = 0; i < MipCount; ++i) {
44
+ this.horizontalBlurTargets[i] = webgl.createRenderTarget(blurWidth, blurHeight, false, 'uint8', 'linear');
45
+ this.verticalBlurTargets[i] = webgl.createRenderTarget(blurWidth, blurHeight, false, 'uint8', 'linear');
46
+ blurWidth = Math.round(blurWidth / 2);
47
+ blurHeight = Math.round(blurHeight / 2);
48
+ }
49
+ const nullTexture = createNullTexture();
50
+ this.luminosityRenderable = getLuminosityRenderable(webgl, nullTexture, nullTexture, nullTexture);
51
+ this.blurRenderable = getBlurRenderable(webgl, nullTexture);
52
+ this.compositeRenderable = getCompositeRenderable(webgl, width, height, this.verticalBlurTargets[0].texture, this.verticalBlurTargets[1].texture, this.verticalBlurTargets[2].texture, this.verticalBlurTargets[3].texture, this.verticalBlurTargets[4].texture);
53
+ this.copyRenderable = createCopyRenderable(webgl, this.compositeTarget.texture);
54
+ }
55
+ setSize(width, height) {
56
+ const w = this.luminosityTarget.getWidth();
57
+ const h = this.luminosityTarget.getHeight();
58
+ if (width !== w || height !== h) {
59
+ this.emissiveTarget.setSize(width, height);
60
+ this.luminosityTarget.setSize(width, height);
61
+ this.compositeTarget.setSize(width, height);
62
+ let blurWidth = Math.round(width / 2);
63
+ let blurHeight = Math.round(height / 2);
64
+ for (let i = 0; i < MipCount; ++i) {
65
+ this.horizontalBlurTargets[i].setSize(blurWidth, blurHeight);
66
+ this.verticalBlurTargets[i].setSize(blurWidth, blurHeight);
67
+ blurWidth = Math.round(blurWidth / 2);
68
+ blurHeight = Math.round(blurHeight / 2);
69
+ }
70
+ ValueCell.update(this.luminosityRenderable.values.uTexSizeInv, Vec2.set(this.compositeRenderable.values.uTexSizeInv.ref.value, 1 / width, 1 / height));
71
+ ValueCell.update(this.compositeRenderable.values.uTexSizeInv, Vec2.set(this.compositeRenderable.values.uTexSizeInv.ref.value, 1 / width, 1 / height));
72
+ ValueCell.update(this.copyRenderable.values.uTexSize, Vec2.set(this.copyRenderable.values.uTexSize.ref.value, width, height));
73
+ }
74
+ }
75
+ update(input, emissive, depth, props) {
76
+ let luminosityNeedsUpdate = false;
77
+ if (this.luminosityRenderable.values.tColor.ref.value !== input) {
78
+ ValueCell.update(this.luminosityRenderable.values.tColor, input);
79
+ luminosityNeedsUpdate = true;
80
+ }
81
+ if (this.luminosityRenderable.values.tEmissive.ref.value !== emissive) {
82
+ ValueCell.update(this.luminosityRenderable.values.tEmissive, emissive);
83
+ luminosityNeedsUpdate = true;
84
+ }
85
+ if (this.luminosityRenderable.values.tDepth.ref.value !== depth) {
86
+ ValueCell.update(this.luminosityRenderable.values.tDepth, depth);
87
+ luminosityNeedsUpdate = true;
88
+ }
89
+ if (this.luminosityRenderable.values.dMode.ref.value !== props.mode) {
90
+ ValueCell.update(this.luminosityRenderable.values.dMode, props.mode);
91
+ luminosityNeedsUpdate = true;
92
+ }
93
+ ValueCell.updateIfChanged(this.luminosityRenderable.values.uLuminosityThreshold, props.threshold);
94
+ if (luminosityNeedsUpdate) {
95
+ this.luminosityRenderable.update();
96
+ }
97
+ //
98
+ let blurNeedsUpdate = false;
99
+ if (this.blurRenderable.values.tInput.ref.value !== input) {
100
+ ValueCell.update(this.blurRenderable.values.tInput, input);
101
+ blurNeedsUpdate = true;
102
+ }
103
+ if (blurNeedsUpdate) {
104
+ this.blurRenderable.update();
105
+ }
106
+ //
107
+ ValueCell.update(this.compositeRenderable.values.uBloomRadius, props.radius);
108
+ ValueCell.update(this.compositeRenderable.values.uBloomStrength, props.strength);
109
+ }
110
+ render(viewport, target) {
111
+ if (isTimingMode)
112
+ this.webgl.timer.mark('BloomPass.render');
113
+ const { gl, state } = this.webgl;
114
+ const { x, y, width, height } = viewport;
115
+ state.viewport(x, y, width, height);
116
+ state.scissor(x, y, width, height);
117
+ // printTextureImage(readTexture(this.webgl, this.luminosityRenderable.values.tEmissive.ref.value, new Uint8Array(width * height * 4)), { scale: 0.25, id: 'emissive' });
118
+ state.enable(gl.SCISSOR_TEST);
119
+ state.disable(gl.BLEND);
120
+ state.disable(gl.DEPTH_TEST);
121
+ state.depthMask(false);
122
+ // Extract Bright Areas
123
+ this.luminosityTarget.bind();
124
+ this.luminosityRenderable.render();
125
+ // printTextureImage(readTexture(this.webgl, this.luminosityTarget.texture, new Uint8Array(width * height * 4)), { scale: 0.25, id: 'luminosity' });
126
+ // Blur All the mips progressively
127
+ for (let i = 0; i < MipCount; ++i) {
128
+ const blurWidth = this.horizontalBlurTargets[i].getWidth();
129
+ const blurHeight = this.horizontalBlurTargets[i].getHeight();
130
+ state.viewport(0, 0, blurWidth, blurHeight);
131
+ state.scissor(0, 0, blurWidth, blurHeight);
132
+ ValueCell.update(this.blurRenderable.values.dKernelRadius, BlurKernelSizes[i]);
133
+ ValueCell.update(this.blurRenderable.values.uGaussianCoefficients, getBlurCoefficients(BlurKernelSizes[i]));
134
+ ValueCell.update(this.blurRenderable.values.uTexSizeInv, Vec2.set(this.blurRenderable.values.uTexSizeInv.ref.value, 1 / blurWidth, 1 / blurHeight));
135
+ this.horizontalBlurTargets[i].bind();
136
+ ValueCell.update(this.blurRenderable.values.tInput, i === 0 ? this.luminosityTarget.texture : this.verticalBlurTargets[i - 1].texture);
137
+ ValueCell.update(this.blurRenderable.values.uDirection, BlurDirectionX);
138
+ this.blurRenderable.update();
139
+ this.blurRenderable.render();
140
+ this.verticalBlurTargets[i].bind();
141
+ ValueCell.update(this.blurRenderable.values.tInput, this.horizontalBlurTargets[i].texture);
142
+ ValueCell.update(this.blurRenderable.values.uDirection, BlurDirectionY);
143
+ this.blurRenderable.update();
144
+ this.blurRenderable.render();
145
+ // printTextureImage(readTexture(this.webgl, this.verticalBlurTargets[i].texture, new Uint8Array(blurWidth * blurHeight * 4)), { scale: 0.25, id: `blur-${i}` });
146
+ }
147
+ state.viewport(x, y, width, height);
148
+ state.scissor(x, y, width, height);
149
+ // Composite All the mips
150
+ this.compositeTarget.bind();
151
+ this.compositeRenderable.update();
152
+ this.compositeRenderable.render();
153
+ // printTextureImage(readTexture(this.webgl, this.compositeTarget.texture, new Uint8Array(width * height * 4)), { scale: 0.25, id: 'composite' });
154
+ if (target) {
155
+ target.bind();
156
+ }
157
+ else {
158
+ this.webgl.unbindFramebuffer();
159
+ }
160
+ state.enable(gl.BLEND);
161
+ state.blendFunc(gl.ONE, gl.ONE);
162
+ this.copyRenderable.render();
163
+ if (isTimingMode)
164
+ this.webgl.timer.markEnd('BloomPass.render');
165
+ }
166
+ }
167
+ //
168
+ const LuminositySchema = {
169
+ ...QuadSchema,
170
+ tColor: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
171
+ tEmissive: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
172
+ tDepth: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'),
173
+ uTexSizeInv: UniformSpec('v2'),
174
+ uDefaultColor: UniformSpec('v3'),
175
+ uDefaultOpacity: UniformSpec('f'),
176
+ uLuminosityThreshold: UniformSpec('f'),
177
+ uSmoothWidth: UniformSpec('f'),
178
+ dMode: DefineSpec('string', ['luminosity', 'emissive']),
179
+ };
180
+ const LuminosityShaderCode = ShaderCode('Bloom Luminosity', quad_vert, luminosity_frag);
181
+ function getLuminosityRenderable(ctx, colorTexture, emissiveTexture, depthTexture) {
182
+ const width = colorTexture.getWidth();
183
+ const height = colorTexture.getHeight();
184
+ const values = {
185
+ ...QuadValues,
186
+ tColor: ValueCell.create(colorTexture),
187
+ tEmissive: ValueCell.create(emissiveTexture),
188
+ tDepth: ValueCell.create(depthTexture),
189
+ uTexSizeInv: ValueCell.create(Vec2.create(1 / width, 1 / height)),
190
+ uDefaultColor: ValueCell.create(Vec3()),
191
+ uDefaultOpacity: ValueCell.create(0),
192
+ uLuminosityThreshold: ValueCell.create(0),
193
+ uSmoothWidth: ValueCell.create(1),
194
+ dMode: ValueCell.create('emissive'),
195
+ };
196
+ const schema = { ...LuminositySchema };
197
+ const renderItem = createComputeRenderItem(ctx, 'triangles', LuminosityShaderCode, schema, values);
198
+ return createComputeRenderable(renderItem, values);
199
+ }
200
+ //
201
+ function _getBlurCoefficients(kernelRadius) {
202
+ const coefficients = [];
203
+ for (let i = 0; i < kernelRadius; ++i) {
204
+ coefficients.push(0.39894 * Math.exp(-0.5 * i * i / (kernelRadius * kernelRadius)) / kernelRadius);
205
+ }
206
+ return coefficients;
207
+ }
208
+ const getBlurCoefficients = memoize1(_getBlurCoefficients);
209
+ const BlurKernelSizes = [3, 5, 7, 9, 11];
210
+ const BlurDirectionX = Vec2.create(1, 0);
211
+ const BlurDirectionY = Vec2.create(0, 1);
212
+ const BlurSchema = {
213
+ ...QuadSchema,
214
+ tInput: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
215
+ uTexSizeInv: UniformSpec('v2'),
216
+ uDirection: UniformSpec('v2'),
217
+ uGaussianCoefficients: UniformSpec('f[]'),
218
+ dKernelRadius: DefineSpec('number'),
219
+ };
220
+ const BlurShaderCode = ShaderCode('Bloom Blur', quad_vert, blur_frag);
221
+ function getBlurRenderable(ctx, inputTexture) {
222
+ const width = inputTexture.getWidth();
223
+ const height = inputTexture.getHeight();
224
+ const values = {
225
+ ...QuadValues,
226
+ tInput: ValueCell.create(inputTexture),
227
+ uTexSizeInv: ValueCell.create(Vec2.create(1 / width, 1 / height)),
228
+ uDirection: ValueCell.create(Vec2()),
229
+ uGaussianCoefficients: ValueCell.create([]),
230
+ dKernelRadius: ValueCell.create(BlurKernelSizes[0]),
231
+ };
232
+ const schema = { ...BlurSchema };
233
+ const renderItem = createComputeRenderItem(ctx, 'triangles', BlurShaderCode, schema, values);
234
+ return createComputeRenderable(renderItem, values);
235
+ }
236
+ //
237
+ const CompositeSchema = {
238
+ ...QuadSchema,
239
+ tBlur1: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
240
+ tBlur2: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
241
+ tBlur3: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
242
+ tBlur4: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
243
+ tBlur5: TextureSpec('texture', 'rgba', 'ubyte', 'linear'),
244
+ uTexSizeInv: UniformSpec('v2'),
245
+ uBloomStrength: UniformSpec('f'),
246
+ uBloomRadius: UniformSpec('f'),
247
+ uBloomFactors: UniformSpec('f[]'),
248
+ uBloomTints: UniformSpec('v3[]'),
249
+ };
250
+ const CompositeShaderCode = ShaderCode('Bloom Composite', quad_vert, composite_frag);
251
+ function getCompositeRenderable(ctx, width, height, blurTexture1, blurTexture2, blurTexture3, blurTexture4, blurTexture5) {
252
+ const values = {
253
+ ...QuadValues,
254
+ uTexSizeInv: ValueCell.create(Vec2.create(width, height)),
255
+ tBlur1: ValueCell.create(blurTexture1),
256
+ tBlur2: ValueCell.create(blurTexture2),
257
+ tBlur3: ValueCell.create(blurTexture3),
258
+ tBlur4: ValueCell.create(blurTexture4),
259
+ tBlur5: ValueCell.create(blurTexture5),
260
+ uBloomStrength: ValueCell.create(1),
261
+ uBloomRadius: ValueCell.create(0),
262
+ uBloomFactors: ValueCell.create([1.0, 0.8, 0.6, 0.4, 0.2]),
263
+ uBloomTints: ValueCell.create(new Array(5 * 3).fill(1)),
264
+ };
265
+ const schema = { ...CompositeSchema };
266
+ const renderItem = createComputeRenderItem(ctx, 'triangles', CompositeShaderCode, schema, values);
267
+ return createComputeRenderable(renderItem, values);
268
+ }
@@ -162,14 +162,16 @@ export class DpoitPass {
162
162
  }
163
163
  }
164
164
  static isSupported(webgl) {
165
- const { extensions: { drawBuffers, textureFloat, colorBufferFloat, blendMinMax } } = webgl;
166
- if (!textureFloat || !colorBufferFloat || !drawBuffers || !blendMinMax) {
165
+ const { extensions: { drawBuffers, textureFloat, colorBufferFloat, depthTexture, blendMinMax } } = webgl;
166
+ if (!textureFloat || !colorBufferFloat || !depthTexture || !drawBuffers || !blendMinMax) {
167
167
  if (isDebugMode) {
168
168
  const missing = [];
169
169
  if (!textureFloat)
170
170
  missing.push('textureFloat');
171
171
  if (!colorBufferFloat)
172
172
  missing.push('colorBufferFloat');
173
+ if (!depthTexture)
174
+ missing.push('depthTexture');
173
175
  if (!drawBuffers)
174
176
  missing.push('drawBuffers');
175
177
  if (!blendMinMax)
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2019-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
@@ -13,9 +13,12 @@ import { Texture } from '../../mol-gl/webgl/texture';
13
13
  import { Camera } from '../camera';
14
14
  import { Helper } from '../helper/helper';
15
15
  import { StereoCamera } from '../camera/stereo';
16
- import { PostprocessingPass, PostprocessingProps } from './postprocessing';
17
- import { MarkingProps } from './marking';
16
+ import { WboitPass } from './wboit';
17
+ import { DpoitPass } from './dpoit';
18
+ import { AntialiasingPass, PostprocessingPass, PostprocessingProps } from './postprocessing';
19
+ import { MarkingPass, MarkingProps } from './marking';
18
20
  import { AssetManager } from '../../mol-util/assets';
21
+ import { BloomPass } from './bloom';
19
22
  type Props = {
20
23
  postprocessing: PostprocessingProps;
21
24
  marking: MarkingProps;
@@ -40,11 +43,12 @@ export declare class DrawPass {
40
43
  private depthTargetOpaque;
41
44
  private copyFboTarget;
42
45
  private copyFboPostprocessing;
43
- private readonly wboit;
44
- private readonly dpoit;
45
- private readonly marking;
46
+ readonly wboit: WboitPass;
47
+ readonly dpoit: DpoitPass;
48
+ readonly marking: MarkingPass;
46
49
  readonly postprocessing: PostprocessingPass;
47
- private readonly antialiasing;
50
+ readonly antialiasing: AntialiasingPass;
51
+ readonly bloom: BloomPass;
48
52
  private transparencyMode;
49
53
  setTransparency(transparency: 'wboit' | 'dpoit' | 'blended'): void;
50
54
  get transparency(): TransparencyMode;