molstar 4.0.1 → 4.2.0

package/lib/commonjs/mol-plugin-state/objects.d.ts

@@ -38,7 +38,7 @@ export declare namespace PluginStateObject {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../mol-util/uuid").UUID;
+            id: import("../mol-util").UUID;
             type: TypeInfo;
             label: string;
             description?: string | undefined;
@@ -60,7 +60,7 @@ export declare namespace PluginStateObject {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../mol-util/uuid").UUID;
+            id: import("../mol-util").UUID;
             type: TypeInfo;
             label: string;
             description?: string | undefined;
@@ -76,7 +76,7 @@ export declare namespace PluginStateObject {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../mol-util/uuid").UUID;
+            id: import("../mol-util").UUID;
             type: TypeInfo;
             label: string;
             description?: string | undefined;
@@ -90,7 +90,7 @@ export declare namespace PluginStateObject {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../mol-util/uuid").UUID;
+            id: import("../mol-util").UUID;
             type: TypeInfo;
             label: string;
             description?: string | undefined;
@@ -106,7 +106,7 @@ export declare namespace PluginStateObject {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../mol-util/uuid").UUID;
+            id: import("../mol-util").UUID;
             type: TypeInfo;
             label: string;
             description?: string | undefined;
@@ -123,7 +123,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -139,7 +139,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -165,7 +165,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -184,7 +184,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -200,7 +200,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -216,7 +216,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -232,7 +232,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -248,7 +248,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -264,7 +264,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -280,7 +280,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -296,7 +296,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -312,7 +312,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -328,7 +328,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -385,7 +385,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -404,7 +404,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -420,7 +420,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -436,7 +436,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -452,7 +452,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -468,7 +468,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -485,7 +485,7 @@ export declare namespace PluginStateObject {
                     label: string;
                     description?: string | undefined;
                 } | undefined): {
-                    id: import("../mol-util/uuid").UUID;
+                    id: import("../mol-util").UUID;
                     type: TypeInfo;
                     label: string;
                     description?: string | undefined;
@@ -508,7 +508,7 @@ export declare namespace PluginStateObject {
                     label: string;
                     description?: string | undefined;
                 } | undefined): {
-                    id: import("../mol-util/uuid").UUID;
+                    id: import("../mol-util").UUID;
                     type: TypeInfo;
                     label: string;
                     description?: string | undefined;
@@ -529,7 +529,7 @@ export declare namespace PluginStateObject {
                     label: string;
                     description?: string | undefined;
                 } | undefined): {
-                    id: import("../mol-util/uuid").UUID;
+                    id: import("../mol-util").UUID;
                     type: TypeInfo;
                     label: string;
                     description?: string | undefined;
@@ -563,7 +563,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -579,7 +579,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -595,7 +595,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -614,7 +614,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;
@@ -630,7 +630,7 @@ export declare namespace PluginStateObject {
                 label: string;
                 description?: string | undefined;
             } | undefined): {
-                id: import("../mol-util/uuid").UUID;
+                id: import("../mol-util").UUID;
                 type: TypeInfo;
                 label: string;
                 description?: string | undefined;

package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts

@@ -24,6 +24,8 @@ export { OverpaintStructureRepresentation3DFromScript };
 export { OverpaintStructureRepresentation3DFromBundle };
 export { TransparencyStructureRepresentation3DFromScript };
 export { TransparencyStructureRepresentation3DFromBundle };
+export { EmissiveStructureRepresentation3DFromScript };
+export { EmissiveStructureRepresentation3DFromBundle };
 export { SubstanceStructureRepresentation3DFromScript };
 export { SubstanceStructureRepresentation3DFromBundle };
 export { ClippingStructureRepresentation3DFromScript };
@@ -86,6 +88,20 @@ declare const TransparencyStructureRepresentation3DFromBundle: StateTransformer<
         value: number;
     }>[];
 }>>;
+type EmissiveStructureRepresentation3DFromScript = typeof EmissiveStructureRepresentation3DFromScript;
+declare const EmissiveStructureRepresentation3DFromScript: StateTransformer<SO.Molecule.Structure.Representation3D, SO.Molecule.Structure.Representation3DState, PD.Normalize<{
+    layers: PD.Normalize<{
+        script: Script;
+        value: number;
+    }>[];
+}>>;
+type EmissiveStructureRepresentation3DFromBundle = typeof EmissiveStructureRepresentation3DFromBundle;
+declare const EmissiveStructureRepresentation3DFromBundle: StateTransformer<SO.Molecule.Structure.Representation3D, SO.Molecule.Structure.Representation3DState, PD.Normalize<{
+    layers: PD.Normalize<{
+        bundle: StructureElement.Bundle;
+        value: number;
+    }>[];
+}>>;
 type SubstanceStructureRepresentation3DFromScript = typeof SubstanceStructureRepresentation3DFromScript;
 declare const SubstanceStructureRepresentation3DFromScript: StateTransformer<SO.Molecule.Structure.Representation3D, SO.Molecule.Structure.Representation3DState, PD.Normalize<{
     layers: PD.Normalize<{
@@ -128,6 +144,7 @@ type ThemeStrengthRepresentation3D = typeof ThemeStrengthRepresentation3D;
 declare const ThemeStrengthRepresentation3D: StateTransformer<SO.Molecule.Structure.Representation3D, SO.Molecule.Structure.Representation3DState, PD.Normalize<{
     overpaintStrength: number;
     transparencyStrength: number;
+    emissiveStrength: number;
     substanceStrength: number;
 }>>;
 export declare namespace VolumeRepresentation3DHelpers {
@@ -170,8 +187,9 @@ declare const ModelUnitcell3D: StateTransformer<SO.Molecule.Model, SO.Shape.Repr
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
 }>>;
@@ -197,8 +215,9 @@ declare const StructureBoundingBox3D: StateTransformer<SO.Molecule.Structure, SO
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
     radius: number;
@@ -242,8 +261,9 @@ declare const StructureSelectionsDistance3D: StateTransformer<SO.Molecule.Struct
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
     lineSizeAttenuation: boolean;
@@ -288,8 +308,9 @@ declare const StructureSelectionsAngle3D: StateTransformer<SO.Molecule.Structure
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
     ignoreLight: boolean;
@@ -344,8 +365,9 @@ declare const StructureSelectionsDihedral3D: StateTransformer<SO.Molecule.Struct
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
     ignoreLight: boolean;
@@ -403,8 +425,9 @@ declare const StructureSelectionsLabel3D: StateTransformer<SO.Molecule.Structure
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
 }>>;
@@ -434,8 +457,9 @@ declare const StructureSelectionsOrientation3D: StateTransformer<SO.Molecule.Str
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
 }>>;
@@ -464,8 +488,9 @@ declare const StructureSelectionsPlane3D: StateTransformer<SO.Molecule.Structure
         variant: any;
         objects: any;
     }>;
+    emissive: number;
     instanceGranularity: boolean;
-    lod: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
+    lod: import("../../mol-math/linear-algebra").Vec3;
     cellSize: number;
     batchSize: number;
 }>>;

package/lib/commonjs/mol-plugin-state/transforms/representation.js

@@ -6,7 +6,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.StructureSelectionsPlane3D = exports.StructureSelectionsOrientation3D = exports.StructureSelectionsLabel3D = exports.StructureSelectionsDihedral3D = exports.StructureSelectionsAngle3D = exports.StructureSelectionsDistance3D = exports.StructureBoundingBox3D = exports.ModelUnitcell3D = exports.ShapeRepresentation3D = exports.VolumeRepresentation3DHelpers = exports.VolumeRepresentation3D = exports.ThemeStrengthRepresentation3D = exports.ClippingStructureRepresentation3DFromBundle = exports.ClippingStructureRepresentation3DFromScript = exports.SubstanceStructureRepresentation3DFromBundle = exports.SubstanceStructureRepresentation3DFromScript = exports.TransparencyStructureRepresentation3DFromBundle = exports.TransparencyStructureRepresentation3DFromScript = exports.OverpaintStructureRepresentation3DFromBundle = exports.OverpaintStructureRepresentation3DFromScript = exports.UnwindStructureAssemblyRepresentation3D = exports.SpinStructureRepresentation3D = exports.ExplodeStructureRepresentation3D = exports.StructureRepresentation3D = void 0;
+exports.StructureSelectionsPlane3D = exports.StructureSelectionsOrientation3D = exports.StructureSelectionsLabel3D = exports.StructureSelectionsDihedral3D = exports.StructureSelectionsAngle3D = exports.StructureSelectionsDistance3D = exports.StructureBoundingBox3D = exports.ModelUnitcell3D = exports.ShapeRepresentation3D = exports.VolumeRepresentation3DHelpers = exports.VolumeRepresentation3D = exports.ThemeStrengthRepresentation3D = exports.ClippingStructureRepresentation3DFromBundle = exports.ClippingStructureRepresentation3DFromScript = exports.SubstanceStructureRepresentation3DFromBundle = exports.SubstanceStructureRepresentation3DFromScript = exports.EmissiveStructureRepresentation3DFromBundle = exports.EmissiveStructureRepresentation3DFromScript = exports.TransparencyStructureRepresentation3DFromBundle = exports.TransparencyStructureRepresentation3DFromScript = exports.OverpaintStructureRepresentation3DFromBundle = exports.OverpaintStructureRepresentation3DFromScript = exports.UnwindStructureAssemblyRepresentation3D = exports.SpinStructureRepresentation3D = exports.ExplodeStructureRepresentation3D = exports.StructureRepresentation3D = void 0;
 const structure_1 = require("../../mol-model/structure");
 const volume_1 = require("../../mol-model/volume");
 const mol_state_1 = require("../../mol-state");
@@ -41,6 +41,7 @@ const substance_1 = require("../../mol-theme/substance");
 const material_1 = require("../../mol-util/material");
 const interpolate_1 = require("../../mol-math/interpolate");
 const marker_action_1 = require("../../mol-util/marker-action");
+const emissive_1 = require("../../mol-theme/emissive");
 const StructureRepresentation3D = objects_1.PluginStateTransform.BuiltIn({
     name: 'structure-representation-3d',
     display: '3D Representation',
@@ -484,6 +485,115 @@ const TransparencyStructureRepresentation3DFromBundle = objects_1.PluginStateTra
     }
 });
 exports.TransparencyStructureRepresentation3DFromBundle = TransparencyStructureRepresentation3DFromBundle;
+const EmissiveStructureRepresentation3DFromScript = objects_1.PluginStateTransform.BuiltIn({
+    name: 'emissive-structure-representation-3d-from-script',
+    display: 'Emissive 3D Representation',
+    from: objects_1.PluginStateObject.Molecule.Structure.Representation3D,
+    to: objects_1.PluginStateObject.Molecule.Structure.Representation3DState,
+    params: () => ({
+        layers: param_definition_1.ParamDefinition.ObjectList({
+            script: param_definition_1.ParamDefinition.Script((0, script_1.Script)('(sel.atom.all)', 'mol-script')),
+            value: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }, { label: 'Emissive' }),
+        }, e => `Emissive (${e.value})`, {
+            defaultValue: [{
+                    script: (0, script_1.Script)('(sel.atom.all)', 'mol-script'),
+                    value: 0.5,
+                }]
+        })
+    })
+})({
+    canAutoUpdate() {
+        return true;
+    },
+    apply({ a, params }) {
+        const structure = a.data.sourceData;
+        const geometryVersion = a.data.repr.geometryVersion;
+        const emissive = emissive_1.Emissive.ofScript(params.layers, structure);
+        return new objects_1.PluginStateObject.Molecule.Structure.Representation3DState({
+            state: { emissive },
+            initialState: { emissive: emissive_1.Emissive.Empty },
+            info: { structure, geometryVersion },
+            repr: a.data.repr
+        }, { label: `Emissive (${emissive.layers.length} Layers)` });
+    },
+    update({ a, b, newParams, oldParams }) {
+        const info = b.data.info;
+        const newStructure = a.data.sourceData;
+        if (newStructure !== info.structure)
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        if (a.data.repr !== b.data.repr)
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        const newGeometryVersion = a.data.repr.geometryVersion;
+        // smoothing needs to be re-calculated when geometry changes
+        if (newGeometryVersion !== info.geometryVersion && (0, base_1.hasColorSmoothingProp)(a.data.repr.props))
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        const oldEmissive = b.data.state.emissive;
+        const newEmissive = emissive_1.Emissive.ofScript(newParams.layers, newStructure);
+        if (emissive_1.Emissive.areEqual(oldEmissive, newEmissive))
+            return mol_state_1.StateTransformer.UpdateResult.Unchanged;
+        info.geometryVersion = newGeometryVersion;
+        b.data.state.emissive = newEmissive;
+        b.data.repr = a.data.repr;
+        b.label = `Emissive (${newEmissive.layers.length} Layers)`;
+        return mol_state_1.StateTransformer.UpdateResult.Updated;
+    }
+});
+exports.EmissiveStructureRepresentation3DFromScript = EmissiveStructureRepresentation3DFromScript;
+const EmissiveStructureRepresentation3DFromBundle = objects_1.PluginStateTransform.BuiltIn({
+    name: 'emissive-structure-representation-3d-from-bundle',
+    display: 'Emissive 3D Representation',
+    from: objects_1.PluginStateObject.Molecule.Structure.Representation3D,
+    to: objects_1.PluginStateObject.Molecule.Structure.Representation3DState,
+    params: () => ({
+        layers: param_definition_1.ParamDefinition.ObjectList({
+            bundle: param_definition_1.ParamDefinition.Value(structure_1.StructureElement.Bundle.Empty),
+            value: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }, { label: 'Emissive' }),
+        }, e => `Emissive (${e.value})`, {
+            defaultValue: [{
+                    bundle: structure_1.StructureElement.Bundle.Empty,
+                    value: 0.5,
+                }],
+            isHidden: true
+        })
+    })
+})({
+    canAutoUpdate() {
+        return true;
+    },
+    apply({ a, params }) {
+        const structure = a.data.sourceData;
+        const geometryVersion = a.data.repr.geometryVersion;
+        const emissive = emissive_1.Emissive.ofBundle(params.layers, structure);
+        return new objects_1.PluginStateObject.Molecule.Structure.Representation3DState({
+            state: { emissive },
+            initialState: { emissive: emissive_1.Emissive.Empty },
+            info: { structure, geometryVersion },
+            repr: a.data.repr
+        }, { label: `Emissive (${emissive.layers.length} Layers)` });
+    },
+    update({ a, b, newParams, oldParams }) {
+        const info = b.data.info;
+        const newStructure = a.data.sourceData;
+        if (newStructure !== info.structure)
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        if (a.data.repr !== b.data.repr)
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        const newGeometryVersion = a.data.repr.geometryVersion;
+        // smoothing needs to be re-calculated when geometry changes
+        if (newGeometryVersion !== info.geometryVersion && (0, base_1.hasColorSmoothingProp)(a.data.repr.props))
+            return mol_state_1.StateTransformer.UpdateResult.Recreate;
+        const oldEmissive = b.data.state.emissive;
+        const newEmissive = emissive_1.Emissive.ofBundle(newParams.layers, newStructure);
+        if (emissive_1.Emissive.areEqual(oldEmissive, newEmissive))
+            return mol_state_1.StateTransformer.UpdateResult.Unchanged;
+        info.geometryVersion = newGeometryVersion;
+        b.data.state.emissive = newEmissive;
+        b.data.repr = a.data.repr;
+        b.label = `Emissive (${newEmissive.layers.length} Layers)`;
+        return mol_state_1.StateTransformer.UpdateResult.Updated;
+    }
+});
+exports.EmissiveStructureRepresentation3DFromBundle = EmissiveStructureRepresentation3DFromBundle;
 const SubstanceStructureRepresentation3DFromScript = objects_1.PluginStateTransform.BuiltIn({
     name: 'substance-structure-representation-3d-from-script',
     display: 'Substance 3D Representation',
@@ -700,6 +810,7 @@ const ThemeStrengthRepresentation3D = objects_1.PluginStateTransform.BuiltIn({
     params: () => ({
         overpaintStrength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
         transparencyStrength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
+        emissiveStrength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
         substanceStrength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }),
     })
 })({
@@ -712,36 +823,40 @@ const ThemeStrengthRepresentation3D = objects_1.PluginStateTransform.BuiltIn({
                 themeStrength: {
                     overpaint: params.overpaintStrength,
                     transparency: params.transparencyStrength,
+                    emissive: params.emissiveStrength,
                     substance: params.substanceStrength
                 },
             },
             initialState: {
-                themeStrength: { overpaint: 1, transparency: 1, substance: 1 },
+                themeStrength: { overpaint: 1, transparency: 1, emissive: 1, substance: 1 },
             },
             info: {},
             repr: a.data.repr
-        }, { label: 'Theme Strength', description: `${params.overpaintStrength.toFixed(2)}, ${params.transparencyStrength.toFixed(2)}, ${params.substanceStrength.toFixed(2)}` });
+        }, { label: 'Theme Strength', description: `${params.overpaintStrength.toFixed(2)}, ${params.transparencyStrength.toFixed(2)}, ${params.emissiveStrength.toFixed(2)}, ${params.substanceStrength.toFixed(2)}` });
     },
     update({ a, b, newParams, oldParams }) {
-        var _a, _b, _c;
+        var _a, _b, _c, _d;
         if (newParams.overpaintStrength === ((_a = b.data.state.themeStrength) === null || _a === void 0 ? void 0 : _a.overpaint) &&
             newParams.transparencyStrength === ((_b = b.data.state.themeStrength) === null || _b === void 0 ? void 0 : _b.transparency) &&
-            newParams.substanceStrength === ((_c = b.data.state.themeStrength) === null || _c === void 0 ? void 0 : _c.substance))
+            newParams.emissiveStrength === ((_c = b.data.state.themeStrength) === null || _c === void 0 ? void 0 : _c.emissive) &&
+            newParams.substanceStrength === ((_d = b.data.state.themeStrength) === null || _d === void 0 ? void 0 : _d.substance))
             return mol_state_1.StateTransformer.UpdateResult.Unchanged;
         b.data.state.themeStrength = {
             overpaint: newParams.overpaintStrength,
             transparency: newParams.transparencyStrength,
+            emissive: newParams.emissiveStrength,
             substance: newParams.substanceStrength,
         };
         b.data.repr = a.data.repr;
         b.label = 'Theme Strength';
-        b.description = `${newParams.overpaintStrength.toFixed(2)}, ${newParams.transparencyStrength.toFixed(2)}, ${newParams.substanceStrength.toFixed(2)}`;
+        b.description = `${newParams.overpaintStrength.toFixed(2)}, ${newParams.transparencyStrength.toFixed(2)}, ${newParams.emissiveStrength.toFixed(2)}, ${newParams.substanceStrength.toFixed(2)}`;
         return mol_state_1.StateTransformer.UpdateResult.Updated;
     },
     interpolate(src, tar, t) {
         return {
             overpaintStrength: (0, interpolate_1.lerp)(src.overpaintStrength, tar.overpaintStrength, t),
             transparencyStrength: (0, interpolate_1.lerp)(src.transparencyStrength, tar.transparencyStrength, t),
+            emissiveStrength: (0, interpolate_1.lerp)(src.emissiveStrength, tar.emissiveStrength, t),
             substanceStrength: (0, interpolate_1.lerp)(src.substanceStrength, tar.substanceStrength, t),
         };
     }

package/lib/commonjs/mol-plugin-state/transforms/shape.d.ts

@@ -10,7 +10,7 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { PluginStateObject as SO } from '../objects';
 export { BoxShape3D };
 type BoxShape3D = typeof BoxShape3D;
-declare const BoxShape3D: import("../../mol-state/transformer").StateTransformer<SO.Root, SO.Shape.Provider, PD.Normalize<{
+declare const BoxShape3D: import("../../mol-state").StateTransformer<SO.Root, SO.Shape.Provider, PD.Normalize<{
     bottomLeft: Vec3;
     topRight: Vec3;
     radius: number;

package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts

@@ -1,8 +1,9 @@
 /**
- * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Yakov Pechersky <ffxen158@gmail.com>
  */
 import { Vec3 } from '../../mol-math/linear-algebra';
 import { ParamDefinition as PD } from '../../mol-util/param-definition';
@@ -15,30 +16,30 @@ export { AssignColorVolume };
 export { VolumeFromDensityServerCif };
 export { VolumeFromSegmentationCif };
 type VolumeFromCcp4 = typeof VolumeFromCcp4;
-declare const VolumeFromCcp4: import("../../mol-state/transformer").StateTransformer<SO.Format.Ccp4, SO.Volume.Data, PD.Normalize<{
+declare const VolumeFromCcp4: import("../../mol-state").StateTransformer<SO.Format.Ccp4, SO.Volume.Data, PD.Normalize<{
     voxelSize: Vec3;
     offset: Vec3;
     entryId: string;
 }>>;
 type VolumeFromDsn6 = typeof VolumeFromDsn6;
-declare const VolumeFromDsn6: import("../../mol-state/transformer").StateTransformer<SO.Format.Dsn6, SO.Volume.Data, PD.Normalize<{
+declare const VolumeFromDsn6: import("../../mol-state").StateTransformer<SO.Format.Dsn6, SO.Volume.Data, PD.Normalize<{
     voxelSize: Vec3;
     entryId: string;
 }>>;
 type VolumeFromCube = typeof VolumeFromCube;
-declare const VolumeFromCube: import("../../mol-state/transformer").StateTransformer<SO.Format.Cube, SO.Volume.Data, PD.Normalize<{
+declare const VolumeFromCube: import("../../mol-state").StateTransformer<SO.Format.Cube, SO.Volume.Data, PD.Normalize<{
     dataIndex: number;
     entryId: string;
 }>>;
 type VolumeFromDx = typeof VolumeFromDx;
-declare const VolumeFromDx: import("../../mol-state/transformer").StateTransformer<SO.Format.Dx, SO.Volume.Data, PD.Normalize<{}>>;
+declare const VolumeFromDx: import("../../mol-state").StateTransformer<SO.Format.Dx, SO.Volume.Data, PD.Normalize<{}>>;
 type VolumeFromDensityServerCif = typeof VolumeFromDensityServerCif;
-declare const VolumeFromDensityServerCif: import("../../mol-state/transformer").StateTransformer<SO.Format.Cif, SO.Volume.Data, PD.Normalize<{
+declare const VolumeFromDensityServerCif: import("../../mol-state").StateTransformer<SO.Format.Cif, SO.Volume.Data, PD.Normalize<{
     blockHeader: string | undefined;
     entryId: string;
 }>>;
 type VolumeFromSegmentationCif = typeof VolumeFromSegmentationCif;
-declare const VolumeFromSegmentationCif: import("../../mol-state/transformer").StateTransformer<SO.Format.Cif, SO.Volume.Data, PD.Normalize<{
+declare const VolumeFromSegmentationCif: import("../../mol-state").StateTransformer<SO.Format.Cif, SO.Volume.Data, PD.Normalize<{
     blockHeader: string | undefined;
     segmentLabels: PD.Normalize<{
         id: any;
@@ -47,6 +48,13 @@ declare const VolumeFromSegmentationCif: import("../../mol-state/transformer").S
     ownerId: string;
 }>>;
 type AssignColorVolume = typeof AssignColorVolume;
-declare const AssignColorVolume: import("../../mol-state/transformer").StateTransformer<SO.Volume.Data, SO.Volume.Data, PD.Normalize<{
+declare const AssignColorVolume: import("../../mol-state").StateTransformer<SO.Volume.Data, SO.Volume.Data, PD.Normalize<{
     ref: string;
 }>>;
+export type VolumeTransform = typeof VolumeTransform;
+export declare const VolumeTransform: import("../../mol-state").StateTransformer<SO.Volume.Data, SO.Volume.Data, PD.Normalize<{
+    transform: PD.NamedParams<PD.Normalize<{
+        data: any;
+        transpose: any;
+    }>, "matrix">;
+}>>;