molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
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  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193
@@ -1,12 +1,13 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
+ * @author Yakov Pechersky <ffxen158@gmail.com>
7
8
  */
8
9
  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.VolumeFromSegmentationCif = exports.VolumeFromDensityServerCif = exports.AssignColorVolume = exports.VolumeFromDx = exports.VolumeFromCube = exports.VolumeFromDsn6 = exports.VolumeFromCcp4 = void 0;
10
+ exports.VolumeTransform = exports.VolumeFromSegmentationCif = exports.VolumeFromDensityServerCif = exports.AssignColorVolume = exports.VolumeFromDx = exports.VolumeFromCube = exports.VolumeFromDsn6 = exports.VolumeFromCcp4 = void 0;
10
11
  const cif_1 = require("../../mol-io/reader/cif");
11
12
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
12
13
  const ccp4_1 = require("../../mol-model-formats/volume/ccp4");
@@ -17,6 +18,7 @@ const param_definition_1 = require("../../mol-util/param-definition");
17
18
  const objects_1 = require("../objects");
18
19
  const cube_1 = require("../../mol-model-formats/volume/cube");
19
20
  const dx_1 = require("../../mol-model-formats/volume/dx");
21
+ const volume_1 = require("../../mol-model/volume");
20
22
  const mol_state_1 = require("../../mol-state");
21
23
  const segmentation_1 = require("../../mol-model-formats/volume/segmentation");
22
24
  const VolumeFromCcp4 = objects_1.PluginStateTransform.BuiltIn({
@@ -220,3 +222,50 @@ const AssignColorVolume = objects_1.PluginStateTransform.BuiltIn({
220
222
  }
221
223
  });
222
224
  exports.AssignColorVolume = AssignColorVolume;
225
+ exports.VolumeTransform = objects_1.PluginStateTransform.BuiltIn({
226
+ name: 'volume-transform',
227
+ display: { name: 'Transform Volume' },
228
+ isDecorator: true,
229
+ from: objects_1.PluginStateObject.Volume.Data,
230
+ to: objects_1.PluginStateObject.Volume.Data,
231
+ params: {
232
+ transform: param_definition_1.ParamDefinition.MappedStatic('matrix',
233
+ // TODO: support "components" based rotation
234
+ {
235
+ matrix: param_definition_1.ParamDefinition.Group({
236
+ data: param_definition_1.ParamDefinition.Mat4(linear_algebra_1.Mat4.identity()),
237
+ transpose: param_definition_1.ParamDefinition.Boolean(false),
238
+ }, { isFlat: true }),
239
+ }, { label: 'Kind' }),
240
+ },
241
+ })({
242
+ canAutoUpdate({ newParams }) {
243
+ return newParams.transform.name !== 'matrix';
244
+ },
245
+ apply({ a, params }) {
246
+ // similar to StateTransforms.Model.TransformStructureConformation;
247
+ const transform = (0, linear_algebra_1.Mat4)();
248
+ let gridTransform = { ...a.data.grid.transform };
249
+ linear_algebra_1.Mat4.copy(transform, params.transform.params.data);
250
+ if (params.transform.params.transpose)
251
+ linear_algebra_1.Mat4.transpose(transform, transform);
252
+ const origMat = a.data.grid.transform.kind === 'matrix'
253
+ ? a.data.grid.transform.matrix
254
+ : volume_1.Grid.getGridToCartesianTransform(a.data.grid);
255
+ gridTransform = {
256
+ kind: 'matrix',
257
+ matrix: linear_algebra_1.Mat4.mul((0, linear_algebra_1.Mat4)(), transform, origMat),
258
+ };
259
+ const v = {
260
+ ...a.data,
261
+ grid: {
262
+ ...a.data.grid,
263
+ transform: gridTransform,
264
+ },
265
+ };
266
+ return new objects_1.PluginStateObject.Volume.Data(v, {
267
+ label: a.label,
268
+ description: `${a.description} [Transformed]`,
269
+ });
270
+ },
271
+ });
@@ -34,7 +34,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
34
34
  initialValues: any;
35
35
  isEmpty: boolean;
36
36
  };
37
- getTransformerId(): import("../../mol-state/transformer").StateTransformer.Id;
37
+ getTransformerId(): import("../../mol-state").StateTransformer.Id;
38
38
  getHeader(): "none" | {
39
39
  readonly name: string;
40
40
  readonly description?: string | undefined;
@@ -44,7 +44,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
44
44
  applyText(): string;
45
45
  isUpdate(): boolean;
46
46
  getSourceAndTarget(): {
47
- a: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
47
+ a: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
48
48
  };
49
49
  private _getInfo;
50
50
  state: ApplyActionControl.ComponentState;
@@ -36,9 +36,9 @@ declare class UpdateTransformControl extends TransformControlBase<UpdateTransfor
36
36
  applyText(): "Update" | "Nothing to Update";
37
37
  isUpdate(): boolean;
38
38
  getSourceAndTarget(): {
39
- a: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
40
- b: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
41
- bCell: import("../../mol-state/object").StateObjectCell<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, StateTransform<StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>> | undefined;
39
+ a: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
40
+ b: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
41
+ bCell: import("../../mol-state").StateObjectCell<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, StateTransform<StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>> | undefined;
42
42
  };
43
43
  canAutoApply(newParams: any): boolean;
44
44
  componentDidMount(): void;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -22,6 +22,7 @@ import { BaseGeometry } from '../mol-geo/geometry/base';
22
22
  import { CustomProperty } from '../mol-model-props/common/custom-property';
23
23
  import { Clipping } from '../mol-theme/clipping';
24
24
  import { Substance } from '../mol-theme/substance';
25
+ import { Emissive } from '../mol-theme/emissive';
25
26
  export type RepresentationProps = {
26
27
  [k: string]: any;
27
28
  };
@@ -130,14 +131,17 @@ declare namespace Representation {
130
131
  overpaint: Overpaint;
131
132
  /** Per group transparency applied to the representation's renderobjects */
132
133
  transparency: Transparency;
134
+ /** Per group emissive applied to the representation's renderobjects */
135
+ emissive: Emissive;
133
136
  /** Per group material applied to the representation's renderobjects */
134
137
  substance: Substance;
135
138
  /** Bit mask of per group clipping applied to the representation's renderobjects */
136
139
  clipping: Clipping;
137
- /** Strength of the representations overpaint, transparency, substance*/
140
+ /** Strength of the representations overpaint, transparency, emmissive substance*/
138
141
  themeStrength: {
139
142
  overpaint: number;
140
143
  transparency: number;
144
+ emissive: number;
141
145
  substance: number;
142
146
  };
143
147
  /** Controls if the representation's renderobjects are synced automatically with GPU or not */
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
@@ -24,6 +24,7 @@ const clipping_1 = require("../mol-theme/clipping");
24
24
  const set_1 = require("../mol-util/set");
25
25
  const util_2 = require("../mol-data/util");
26
26
  const substance_1 = require("../mol-theme/substance");
27
+ const emissive_1 = require("../mol-theme/emissive");
27
28
  var RepresentationProvider;
28
29
  (function (RepresentationProvider) {
29
30
  function getDetaultParams(r, ctx, data) {
@@ -119,9 +120,10 @@ var Representation;
119
120
  transform: linear_algebra_1.Mat4.identity(),
120
121
  overpaint: overpaint_1.Overpaint.Empty,
121
122
  transparency: transparency_1.Transparency.Empty,
123
+ emissive: emissive_1.Emissive.Empty,
122
124
  substance: substance_1.Substance.Empty,
123
125
  clipping: clipping_1.Clipping.Empty,
124
- themeStrength: { overpaint: 1, transparency: 1, substance: 1 },
126
+ themeStrength: { overpaint: 1, transparency: 1, emissive: 1, substance: 1 },
125
127
  markerActions: marker_action_1.MarkerActions.All
126
128
  };
127
129
  }
@@ -139,6 +141,8 @@ var Representation;
139
141
  state.overpaint = update.overpaint;
140
142
  if (update.transparency !== undefined)
141
143
  state.transparency = update.transparency;
144
+ if (update.emissive !== undefined)
145
+ state.emissive = update.emissive;
142
146
  if (update.substance !== undefined)
143
147
  state.substance = update.substance;
144
148
  if (update.clipping !== undefined)
@@ -369,9 +373,15 @@ var Representation;
369
373
  if (state.transparency !== undefined) {
370
374
  // TODO
371
375
  }
376
+ if (state.emissive !== undefined) {
377
+ // TODO
378
+ }
372
379
  if (state.substance !== undefined) {
373
380
  // TODO
374
381
  }
382
+ if (state.clipping !== undefined) {
383
+ // TODO
384
+ }
375
385
  if (state.themeStrength !== undefined)
376
386
  visual_1.Visual.setThemeStrength(renderObject, state.themeStrength);
377
387
  if (state.transform !== undefined)
@@ -50,6 +50,7 @@ export declare const AngleParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const LociLabelTextParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const DihedralParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -51,6 +51,7 @@ export declare const DistanceParams: {
51
51
  scale: any;
52
52
  }>[];
53
53
  }>>;
54
+ emissive: PD.Numeric;
54
55
  instanceGranularity: PD.BooleanParam;
55
56
  lod: PD.Vec3;
56
57
  cellSize: PD.Numeric;
@@ -57,6 +57,7 @@ export declare const LabelParams: {
57
57
  scale: any;
58
58
  }>[];
59
59
  }>>;
60
+ emissive: PD.Numeric;
60
61
  instanceGranularity: PD.BooleanParam;
61
62
  lod: PD.Vec3;
62
63
  cellSize: PD.Numeric;
@@ -39,6 +39,7 @@ export declare const OrientationParams: {
39
39
  scale: any;
40
40
  }>[];
41
41
  }>>;
42
+ emissive: PD.Numeric;
42
43
  instanceGranularity: PD.BooleanParam;
43
44
  lod: PD.Vec3;
44
45
  cellSize: PD.Numeric;
@@ -38,6 +38,7 @@ export declare const PlaneParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -41,6 +41,7 @@ export declare const UnitcellParams: {
41
41
  scale: any;
42
42
  }>[];
43
43
  }>>;
44
+ emissive: PD.Numeric;
44
45
  instanceGranularity: PD.BooleanParam;
45
46
  lod: PD.Vec3;
46
47
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -21,6 +21,7 @@ const overpaint_1 = require("../../mol-theme/overpaint");
21
21
  const clipping_1 = require("../../mol-theme/clipping");
22
22
  const transparency_1 = require("../../mol-theme/transparency");
23
23
  const substance_1 = require("../../mol-theme/substance");
24
+ const emissive_1 = require("../../mol-theme/emissive");
24
25
  function ComplexRepresentation(label, ctx, getParams, visualCtor) {
25
26
  let version = 0;
26
27
  const { webgl } = ctx;
@@ -123,6 +124,11 @@ function ComplexRepresentation(label, ctx, getParams, visualCtor) {
123
124
  const remappedTransparency = transparency_1.Transparency.remap(state.transparency, _structure);
124
125
  visual.setTransparency(remappedTransparency, webgl);
125
126
  }
127
+ if (state.emissive !== undefined && visual) {
128
+ // Remap loci from equivalent structure to the current structure
129
+ const remappedEmissive = emissive_1.Emissive.remap(state.emissive, _structure);
130
+ visual.setEmissive(remappedEmissive, webgl);
131
+ }
126
132
  if (state.substance !== undefined && visual) {
127
133
  // Remap loci from equivalent structure to the current structure
128
134
  const remappedSubstance = substance_1.Substance.remap(state.substance, _structure);
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -69,6 +69,7 @@ export declare const ComplexMeshParams: {
69
69
  scale: any;
70
70
  }>[];
71
71
  }>>;
72
+ emissive: PD.Numeric;
72
73
  instanceGranularity: PD.BooleanParam;
73
74
  lod: PD.Vec3;
74
75
  cellSize: PD.Numeric;
@@ -116,6 +117,7 @@ export declare const ComplexSpheresParams: {
116
117
  scale: any;
117
118
  }>[];
118
119
  }>>;
120
+ emissive: PD.Numeric;
119
121
  instanceGranularity: PD.BooleanParam;
120
122
  lod: PD.Vec3;
121
123
  cellSize: PD.Numeric;
@@ -155,6 +157,7 @@ export declare const ComplexCylindersParams: {
155
157
  scale: any;
156
158
  }>[];
157
159
  }>>;
160
+ emissive: PD.Numeric;
158
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  instanceGranularity: PD.BooleanParam;
159
162
  lod: PD.Vec3;
160
163
  cellSize: PD.Numeric;
@@ -186,6 +189,7 @@ export declare const ComplexLinesParams: {
186
189
  scale: any;
187
190
  }>[];
188
191
  }>>;
192
+ emissive: PD.Numeric;
189
193
  instanceGranularity: PD.BooleanParam;
190
194
  lod: PD.Vec3;
191
195
  cellSize: PD.Numeric;
@@ -234,6 +238,7 @@ export declare const ComplexTextParams: {
234
238
  scale: any;
235
239
  }>[];
236
240
  }>>;
241
+ emissive: PD.Numeric;
237
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  instanceGranularity: PD.BooleanParam;
238
243
  lod: PD.Vec3;
239
244
  cellSize: PD.Numeric;
@@ -268,6 +273,7 @@ export declare const ComplexDirectVolumeParams: {
268
273
  scale: any;
269
274
  }>[];
270
275
  }>>;
276
+ emissive: PD.Numeric;
271
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  instanceGranularity: PD.BooleanParam;
272
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  lod: PD.Vec3;
273
279
  cellSize: PD.Numeric;
@@ -305,6 +311,7 @@ export declare const ComplexTextureMeshParams: {
305
311
  scale: any;
306
312
  }>[];
307
313
  }>>;
314
+ emissive: PD.Numeric;
308
315
  instanceGranularity: PD.BooleanParam;
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316
  lod: PD.Vec3;
310
317
  cellSize: PD.Numeric;
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -258,6 +258,10 @@ function ComplexVisual(builder, materialId) {
258
258
  const smoothing = { geometry, props: currentProps, webgl };
259
259
  visual_1.Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
260
260
  },
261
+ setEmissive(emissive, webgl) {
262
+ const smoothing = { geometry, props: currentProps, webgl };
263
+ visual_1.Visual.setEmissive(renderObject, emissive, lociApply, true, smoothing);
264
+ },
261
265
  setSubstance(substance, webgl) {
262
266
  const smoothing = { geometry, props: currentProps, webgl };
263
267
  visual_1.Visual.setSubstance(renderObject, substance, lociApply, true, smoothing);
@@ -38,6 +38,7 @@ export declare const StructureMeshParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -80,6 +81,7 @@ export declare const StructureSpheresParams: {
80
81
  scale: any;
81
82
  }>[];
82
83
  }>>;
84
+ emissive: PD.Numeric;
83
85
  instanceGranularity: PD.BooleanParam;
84
86
  lod: PD.Vec3;
85
87
  cellSize: PD.Numeric;
@@ -114,6 +116,7 @@ export declare const StructureCylindersParams: {
114
116
  scale: any;
115
117
  }>[];
116
118
  }>>;
119
+ emissive: PD.Numeric;
117
120
  instanceGranularity: PD.BooleanParam;
118
121
  lod: PD.Vec3;
119
122
  cellSize: PD.Numeric;
@@ -141,6 +144,7 @@ export declare const StructurePointsParams: {
141
144
  scale: any;
142
145
  }>[];
143
146
  }>>;
147
+ emissive: PD.Numeric;
144
148
  instanceGranularity: PD.BooleanParam;
145
149
  lod: PD.Vec3;
146
150
  cellSize: PD.Numeric;
@@ -167,6 +171,7 @@ export declare const StructureLinesParams: {
167
171
  scale: any;
168
172
  }>[];
169
173
  }>>;
174
+ emissive: PD.Numeric;
170
175
  instanceGranularity: PD.BooleanParam;
171
176
  lod: PD.Vec3;
172
177
  cellSize: PD.Numeric;
@@ -210,6 +215,7 @@ export declare const StructureTextParams: {
210
215
  scale: any;
211
216
  }>[];
212
217
  }>>;
218
+ emissive: PD.Numeric;
213
219
  instanceGranularity: PD.BooleanParam;
214
220
  lod: PD.Vec3;
215
221
  cellSize: PD.Numeric;
@@ -239,6 +245,7 @@ export declare const StructureDirectVolumeParams: {
239
245
  scale: any;
240
246
  }>[];
241
247
  }>>;
248
+ emissive: PD.Numeric;
242
249
  instanceGranularity: PD.BooleanParam;
243
250
  lod: PD.Vec3;
244
251
  cellSize: PD.Numeric;
@@ -271,6 +278,7 @@ export declare const StructureTextureMeshParams: {
271
278
  scale: any;
272
279
  }>[];
273
280
  }>>;
281
+ emissive: PD.Numeric;
274
282
  instanceGranularity: PD.BooleanParam;
275
283
  lod: PD.Vec3;
276
284
  cellSize: PD.Numeric;
@@ -42,6 +42,7 @@ export declare namespace StructureRepresentationRegistry {
42
42
  scale: any;
43
43
  }>[];
44
44
  }>>;
45
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
45
46
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
46
47
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
47
48
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -102,6 +103,7 @@ export declare namespace StructureRepresentationRegistry {
102
103
  scale: any;
103
104
  }>[];
104
105
  }>>;
106
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
105
107
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
106
108
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
107
109
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -170,6 +172,7 @@ export declare namespace StructureRepresentationRegistry {
170
172
  scale: any;
171
173
  }>[];
172
174
  }>>;
175
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
173
176
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
174
177
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
175
178
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -232,6 +235,7 @@ export declare namespace StructureRepresentationRegistry {
232
235
  scale: any;
233
236
  }>[];
234
237
  }>>;
238
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
235
239
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
236
240
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
237
241
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -290,6 +294,7 @@ export declare namespace StructureRepresentationRegistry {
290
294
  scale: any;
291
295
  }>[];
292
296
  }>>;
297
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
293
298
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
294
299
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
295
300
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -328,6 +333,7 @@ export declare namespace StructureRepresentationRegistry {
328
333
  scale: any;
329
334
  }>[];
330
335
  }>>;
336
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
331
337
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
332
338
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
333
339
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -377,6 +383,7 @@ export declare namespace StructureRepresentationRegistry {
377
383
  scale: any;
378
384
  }>[];
379
385
  }>>;
386
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
380
387
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
381
388
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
382
389
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -428,6 +435,7 @@ export declare namespace StructureRepresentationRegistry {
428
435
  scale: any;
429
436
  }>[];
430
437
  }>>;
438
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
431
439
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
432
440
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
433
441
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -463,6 +471,7 @@ export declare namespace StructureRepresentationRegistry {
463
471
  scale: any;
464
472
  }>[];
465
473
  }>>;
474
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
466
475
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
467
476
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
468
477
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -507,6 +516,7 @@ export declare namespace StructureRepresentationRegistry {
507
516
  scale: any;
508
517
  }>[];
509
518
  }>>;
519
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
510
520
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
511
521
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
512
522
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -554,6 +564,7 @@ export declare namespace StructureRepresentationRegistry {
554
564
  scale: any;
555
565
  }>[];
556
566
  }>>;
567
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
557
568
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
558
569
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
559
570
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -586,6 +597,7 @@ export declare namespace StructureRepresentationRegistry {
586
597
  scale: any;
587
598
  }>[];
588
599
  }>>;
600
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
589
601
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
590
602
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
591
603
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -622,6 +634,7 @@ export declare namespace StructureRepresentationRegistry {
622
634
  scale: any;
623
635
  }>[];
624
636
  }>>;
637
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
625
638
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
626
639
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
627
640
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -674,6 +687,7 @@ export declare namespace StructureRepresentationRegistry {
674
687
  scale: any;
675
688
  }>[];
676
689
  }>>;
690
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
677
691
  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
678
692
  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
679
693
  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -41,6 +41,7 @@ export declare const BackboneParams: {
41
41
  scale: any;
42
42
  }>[];
43
43
  }>>;
44
+ emissive: PD.Numeric;
44
45
  instanceGranularity: PD.BooleanParam;
45
46
  lod: PD.Vec3;
46
47
  cellSize: PD.Numeric;
@@ -93,6 +94,7 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
93
94
  scale: any;
94
95
  }>[];
95
96
  }>>;
97
+ emissive: PD.Numeric;
96
98
  instanceGranularity: PD.BooleanParam;
97
99
  lod: PD.Vec3;
98
100
  cellSize: PD.Numeric;
@@ -146,6 +148,7 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
146
148
  scale: any;
147
149
  }>[];
148
150
  }>>;
151
+ emissive: PD.Numeric;
149
152
  instanceGranularity: PD.BooleanParam;
150
153
  lod: PD.Vec3;
151
154
  cellSize: PD.Numeric;
@@ -58,6 +58,7 @@ export declare const BallAndStickParams: {
58
58
  scale: any;
59
59
  }>[];
60
60
  }>>;
61
+ emissive: PD.Numeric;
61
62
  instanceGranularity: PD.BooleanParam;
62
63
  lod: PD.Vec3;
63
64
  cellSize: PD.Numeric;
@@ -129,6 +130,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
129
130
  scale: any;
130
131
  }>[];
131
132
  }>>;
133
+ emissive: PD.Numeric;
132
134
  instanceGranularity: PD.BooleanParam;
133
135
  lod: PD.Vec3;
134
136
  cellSize: PD.Numeric;
@@ -201,6 +203,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
201
203
  scale: any;
202
204
  }>[];
203
205
  }>>;
206
+ emissive: PD.Numeric;
204
207
  instanceGranularity: PD.BooleanParam;
205
208
  lod: PD.Vec3;
206
209
  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const CarbohydrateParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -101,6 +102,7 @@ export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structu
101
102
  scale: any;
102
103
  }>[];
103
104
  }>>;
105
+ emissive: PD.Numeric;
104
106
  instanceGranularity: PD.BooleanParam;
105
107
  lod: PD.Vec3;
106
108
  cellSize: PD.Numeric;
@@ -153,6 +155,7 @@ export declare const CarbohydrateRepresentationProvider: StructureRepresentation
153
155
  scale: any;
154
156
  }>[];
155
157
  }>>;
158
+ emissive: PD.Numeric;
156
159
  instanceGranularity: PD.BooleanParam;
157
160
  lod: PD.Vec3;
158
161
  cellSize: PD.Numeric;
@@ -40,6 +40,7 @@ export declare const CartoonParams: {
40
40
  scale: any;
41
41
  }>[];
42
42
  }>>;
43
+ emissive: PD.Numeric;
43
44
  instanceGranularity: PD.BooleanParam;
44
45
  lod: PD.Vec3;
45
46
  cellSize: PD.Numeric;
@@ -99,6 +100,7 @@ export declare function getCartoonParams(ctx: ThemeRegistryContext, structure: S
99
100
  scale: any;
100
101
  }>[];
101
102
  }>>;
103
+ emissive: PD.Numeric;
102
104
  instanceGranularity: PD.BooleanParam;
103
105
  lod: PD.Vec3;
104
106
  cellSize: PD.Numeric;
@@ -159,6 +161,7 @@ export declare const CartoonRepresentationProvider: StructureRepresentationProvi
159
161
  scale: any;
160
162
  }>[];
161
163
  }>>;
164
+ emissive: PD.Numeric;
162
165
  instanceGranularity: PD.BooleanParam;
163
166
  lod: PD.Vec3;
164
167
  cellSize: PD.Numeric;