molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
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  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
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  *
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  * @author Alexander Rose <alexander.rose@weirdbyte.de>
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  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -255,6 +255,10 @@ export function ComplexVisual(builder, materialId) {
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  const smoothing = { geometry, props: currentProps, webgl };
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  Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
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  },
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+ setEmissive(emissive, webgl) {
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+ const smoothing = { geometry, props: currentProps, webgl };
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+ Visual.setEmissive(renderObject, emissive, lociApply, true, smoothing);
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+ },
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  setSubstance(substance, webgl) {
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  const smoothing = { geometry, props: currentProps, webgl };
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  Visual.setSubstance(renderObject, substance, lociApply, true, smoothing);
@@ -38,6 +38,7 @@ export declare const StructureMeshParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -80,6 +81,7 @@ export declare const StructureSpheresParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -114,6 +116,7 @@ export declare const StructureCylindersParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -141,6 +144,7 @@ export declare const StructurePointsParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -167,6 +171,7 @@ export declare const StructureLinesParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -210,6 +215,7 @@ export declare const StructureTextParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -239,6 +245,7 @@ export declare const StructureDirectVolumeParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -271,6 +278,7 @@ export declare const StructureTextureMeshParams: {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -42,6 +42,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
45
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -102,6 +103,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
106
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -170,6 +172,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -232,6 +235,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -290,6 +294,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -328,6 +333,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -377,6 +383,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -428,6 +435,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -463,6 +471,7 @@ export declare namespace StructureRepresentationRegistry {
463
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  scale: any;
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  }>[];
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  }>>;
474
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -507,6 +516,7 @@ export declare namespace StructureRepresentationRegistry {
507
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  scale: any;
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  }>[];
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  }>>;
519
+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -554,6 +564,7 @@ export declare namespace StructureRepresentationRegistry {
554
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  scale: any;
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  }>[];
556
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -586,6 +597,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -622,6 +634,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
623
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -674,6 +687,7 @@ export declare namespace StructureRepresentationRegistry {
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  scale: any;
675
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  }>[];
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  }>>;
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+ emissive: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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  instanceGranularity: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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  lod: import("../../mol-util/param-definition").ParamDefinition.Vec3;
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  cellSize: import("../../mol-util/param-definition").ParamDefinition.Numeric;
@@ -41,6 +41,7 @@ export declare const BackboneParams: {
41
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -93,6 +94,7 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
93
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -146,6 +148,7 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
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  scale: any;
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -58,6 +58,7 @@ export declare const BallAndStickParams: {
58
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  scale: any;
59
59
  }>[];
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  }>>;
61
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
62
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -129,6 +130,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
129
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  scale: any;
130
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  }>[];
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  }>>;
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+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -201,6 +203,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
201
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  scale: any;
202
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  }>[];
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  }>>;
206
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
205
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const CarbohydrateParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
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  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -101,6 +102,7 @@ export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structu
101
102
  scale: any;
102
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  }>[];
103
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  }>>;
105
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -153,6 +155,7 @@ export declare const CarbohydrateRepresentationProvider: StructureRepresentation
153
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  scale: any;
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  }>[];
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  }>>;
158
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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  cellSize: PD.Numeric;
@@ -40,6 +40,7 @@ export declare const CartoonParams: {
40
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  scale: any;
41
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  }>[];
42
42
  }>>;
43
+ emissive: PD.Numeric;
43
44
  instanceGranularity: PD.BooleanParam;
44
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  lod: PD.Vec3;
45
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  cellSize: PD.Numeric;
@@ -99,6 +100,7 @@ export declare function getCartoonParams(ctx: ThemeRegistryContext, structure: S
99
100
  scale: any;
100
101
  }>[];
101
102
  }>>;
103
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
103
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  lod: PD.Vec3;
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106
  cellSize: PD.Numeric;
@@ -159,6 +161,7 @@ export declare const CartoonRepresentationProvider: StructureRepresentationProvi
159
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  scale: any;
160
162
  }>[];
161
163
  }>>;
164
+ emissive: PD.Numeric;
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  instanceGranularity: PD.BooleanParam;
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  lod: PD.Vec3;
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167
  cellSize: PD.Numeric;
@@ -58,6 +58,7 @@ export declare const EllipsoidParams: {
58
58
  scale: any;
59
59
  }>[];
60
60
  }>>;
61
+ emissive: PD.Numeric;
61
62
  instanceGranularity: PD.BooleanParam;
62
63
  lod: PD.Vec3;
63
64
  cellSize: PD.Numeric;
@@ -117,6 +118,7 @@ export declare function getEllipsoidParams(ctx: ThemeRegistryContext, structure:
117
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  scale: any;
118
119
  }>[];
119
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  }>>;
121
+ emissive: PD.Numeric;
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  cellSize: PD.Numeric;
@@ -177,6 +179,7 @@ export declare const EllipsoidRepresentationProvider: StructureRepresentationPro
177
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  scale: any;
178
180
  }>[];
179
181
  }>>;
182
+ emissive: PD.Numeric;
180
183
  instanceGranularity: PD.BooleanParam;
181
184
  lod: PD.Vec3;
182
185
  cellSize: PD.Numeric;
@@ -38,6 +38,7 @@ export declare const GaussianSurfaceParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -86,6 +87,7 @@ export declare function getGaussianSurfaceParams(ctx: ThemeRegistryContext, stru
86
87
  scale: any;
87
88
  }>[];
88
89
  }>>;
90
+ emissive: PD.Numeric;
89
91
  instanceGranularity: PD.BooleanParam;
90
92
  lod: PD.Vec3;
91
93
  cellSize: PD.Numeric;
@@ -135,6 +137,7 @@ export declare const GaussianSurfaceRepresentationProvider: StructureRepresentat
135
137
  scale: any;
136
138
  }>[];
137
139
  }>>;
140
+ emissive: PD.Numeric;
138
141
  instanceGranularity: PD.BooleanParam;
139
142
  lod: PD.Vec3;
140
143
  cellSize: PD.Numeric;
@@ -40,6 +40,7 @@ export declare const GaussianVolumeParams: {
40
40
  scale: any;
41
41
  }>[];
42
42
  }>>;
43
+ emissive: PD.Numeric;
43
44
  instanceGranularity: PD.BooleanParam;
44
45
  lod: PD.Vec3;
45
46
  cellSize: PD.Numeric;
@@ -78,6 +79,7 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
78
79
  scale: any;
79
80
  }>[];
80
81
  }>>;
82
+ emissive: PD.Numeric;
81
83
  instanceGranularity: PD.BooleanParam;
82
84
  lod: PD.Vec3;
83
85
  cellSize: PD.Numeric;
@@ -117,6 +119,7 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
117
119
  scale: any;
118
120
  }>[];
119
121
  }>>;
122
+ emissive: PD.Numeric;
120
123
  instanceGranularity: PD.BooleanParam;
121
124
  lod: PD.Vec3;
122
125
  cellSize: PD.Numeric;
@@ -54,6 +54,7 @@ export declare const LabelParams: {
54
54
  scale: any;
55
55
  }>[];
56
56
  }>>;
57
+ emissive: PD.Numeric;
57
58
  instanceGranularity: PD.BooleanParam;
58
59
  lod: PD.Vec3;
59
60
  cellSize: PD.Numeric;
@@ -106,6 +107,7 @@ export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Str
106
107
  scale: any;
107
108
  }>[];
108
109
  }>>;
110
+ emissive: PD.Numeric;
109
111
  instanceGranularity: PD.BooleanParam;
110
112
  lod: PD.Vec3;
111
113
  cellSize: PD.Numeric;
@@ -159,6 +161,7 @@ export declare const LabelRepresentationProvider: StructureRepresentationProvide
159
161
  scale: any;
160
162
  }>[];
161
163
  }>>;
164
+ emissive: PD.Numeric;
162
165
  instanceGranularity: PD.BooleanParam;
163
166
  lod: PD.Vec3;
164
167
  cellSize: PD.Numeric;
@@ -38,6 +38,7 @@ export declare const LineParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -83,6 +84,7 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
83
84
  scale: any;
84
85
  }>[];
85
86
  }>>;
87
+ emissive: PD.Numeric;
86
88
  instanceGranularity: PD.BooleanParam;
87
89
  lod: PD.Vec3;
88
90
  cellSize: PD.Numeric;
@@ -129,6 +131,7 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
129
131
  scale: any;
130
132
  }>[];
131
133
  }>>;
134
+ emissive: PD.Numeric;
132
135
  instanceGranularity: PD.BooleanParam;
133
136
  lod: PD.Vec3;
134
137
  cellSize: PD.Numeric;
@@ -38,6 +38,7 @@ export declare const MolecularSurfaceParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -85,6 +86,7 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
85
86
  scale: any;
86
87
  }>[];
87
88
  }>>;
89
+ emissive: PD.Numeric;
88
90
  instanceGranularity: PD.BooleanParam;
89
91
  lod: PD.Vec3;
90
92
  cellSize: PD.Numeric;
@@ -133,6 +135,7 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
133
135
  scale: any;
134
136
  }>[];
135
137
  }>>;
138
+ emissive: PD.Numeric;
136
139
  instanceGranularity: PD.BooleanParam;
137
140
  lod: PD.Vec3;
138
141
  cellSize: PD.Numeric;
@@ -39,6 +39,7 @@ export declare const OrientationParams: {
39
39
  scale: any;
40
40
  }>[];
41
41
  }>>;
42
+ emissive: PD.Numeric;
42
43
  instanceGranularity: PD.BooleanParam;
43
44
  lod: PD.Vec3;
44
45
  cellSize: PD.Numeric;
@@ -76,6 +77,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
76
77
  scale: any;
77
78
  }>[];
78
79
  }>>;
80
+ emissive: PD.Numeric;
79
81
  instanceGranularity: PD.BooleanParam;
80
82
  lod: PD.Vec3;
81
83
  cellSize: PD.Numeric;
@@ -114,6 +116,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
114
116
  scale: any;
115
117
  }>[];
116
118
  }>>;
119
+ emissive: PD.Numeric;
117
120
  instanceGranularity: PD.BooleanParam;
118
121
  lod: PD.Vec3;
119
122
  cellSize: PD.Numeric;
@@ -35,6 +35,7 @@ export declare const PointParams: {
35
35
  scale: any;
36
36
  }>[];
37
37
  }>>;
38
+ emissive: PD.Numeric;
38
39
  instanceGranularity: PD.BooleanParam;
39
40
  lod: PD.Vec3;
40
41
  cellSize: PD.Numeric;
@@ -68,6 +69,7 @@ export declare function getPointParams(ctx: ThemeRegistryContext, structure: Str
68
69
  scale: any;
69
70
  }>[];
70
71
  }>>;
72
+ emissive: PD.Numeric;
71
73
  instanceGranularity: PD.BooleanParam;
72
74
  lod: PD.Vec3;
73
75
  cellSize: PD.Numeric;
@@ -102,6 +104,7 @@ export declare const PointRepresentationProvider: StructureRepresentationProvide
102
104
  scale: any;
103
105
  }>[];
104
106
  }>>;
107
+ emissive: PD.Numeric;
105
108
  instanceGranularity: PD.BooleanParam;
106
109
  lod: PD.Vec3;
107
110
  cellSize: PD.Numeric;
@@ -39,6 +39,7 @@ export declare const PuttyParams: {
39
39
  scale: any;
40
40
  }>[];
41
41
  }>>;
42
+ emissive: PD.Numeric;
42
43
  instanceGranularity: PD.BooleanParam;
43
44
  lod: PD.Vec3;
44
45
  cellSize: PD.Numeric;
@@ -78,6 +79,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
78
79
  scale: any;
79
80
  }>[];
80
81
  }>>;
82
+ emissive: PD.Numeric;
81
83
  instanceGranularity: PD.BooleanParam;
82
84
  lod: PD.Vec3;
83
85
  cellSize: PD.Numeric;
@@ -118,6 +120,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
118
120
  scale: any;
119
121
  }>[];
120
122
  }>>;
123
+ emissive: PD.Numeric;
121
124
  instanceGranularity: PD.BooleanParam;
122
125
  lod: PD.Vec3;
123
126
  cellSize: PD.Numeric;
@@ -53,6 +53,7 @@ export declare const SpacefillParams: {
53
53
  scale: any;
54
54
  }>[];
55
55
  }>>;
56
+ emissive: PD.Numeric;
56
57
  instanceGranularity: PD.BooleanParam;
57
58
  lod: PD.Vec3;
58
59
  cellSize: PD.Numeric;
@@ -106,6 +107,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
106
107
  scale: any;
107
108
  }>[];
108
109
  }>>;
110
+ emissive: PD.Numeric;
109
111
  instanceGranularity: PD.BooleanParam;
110
112
  lod: PD.Vec3;
111
113
  cellSize: PD.Numeric;
@@ -160,6 +162,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
160
162
  scale: any;
161
163
  }>[];
162
164
  }>>;
165
+ emissive: PD.Numeric;
163
166
  instanceGranularity: PD.BooleanParam;
164
167
  lod: PD.Vec3;
165
168
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -20,6 +20,7 @@ import { Mat4, EPSILON } from '../../mol-math/linear-algebra';
20
20
  import { Interval } from '../../mol-data/int';
21
21
  import { Clipping } from '../../mol-theme/clipping';
22
22
  import { Substance } from '../../mol-theme/substance';
23
+ import { Emissive } from '../../mol-theme/emissive';
23
24
  export function UnitsRepresentation(label, ctx, getParams, visualCtor) {
24
25
  let version = 0;
25
26
  const { webgl } = ctx;
@@ -240,7 +241,7 @@ export function UnitsRepresentation(label, ctx, getParams, visualCtor) {
240
241
  return changed;
241
242
  }
242
243
  function setVisualState(visual, group, state) {
243
- const { visible, alphaFactor, pickable, overpaint, transparency, substance, clipping, themeStrength, transform, unitTransforms } = state;
244
+ const { visible, alphaFactor, pickable, overpaint, transparency, emissive, substance, clipping, themeStrength, transform, unitTransforms } = state;
244
245
  if (visible !== undefined)
245
246
  visual.setVisibility(visible);
246
247
  if (alphaFactor !== undefined)
@@ -251,6 +252,8 @@ export function UnitsRepresentation(label, ctx, getParams, visualCtor) {
251
252
  visual.setOverpaint(overpaint, webgl);
252
253
  if (transparency !== undefined)
253
254
  visual.setTransparency(transparency, webgl);
255
+ if (emissive !== undefined)
256
+ visual.setEmissive(emissive, webgl);
254
257
  if (substance !== undefined)
255
258
  visual.setSubstance(substance, webgl);
256
259
  if (clipping !== undefined)
@@ -273,7 +276,7 @@ export function UnitsRepresentation(label, ctx, getParams, visualCtor) {
273
276
  }
274
277
  }
275
278
  function setState(state) {
276
- const { visible, alphaFactor, pickable, overpaint, transparency, substance, clipping, themeStrength, transform, unitTransforms, syncManually, markerActions } = state;
279
+ const { visible, alphaFactor, pickable, overpaint, transparency, emissive, substance, clipping, themeStrength, transform, unitTransforms, syncManually, markerActions } = state;
277
280
  const newState = {};
278
281
  if (visible !== undefined)
279
282
  newState.visible = visible;
@@ -287,6 +290,9 @@ export function UnitsRepresentation(label, ctx, getParams, visualCtor) {
287
290
  if (transparency !== undefined && _structure) {
288
291
  newState.transparency = Transparency.remap(transparency, _structure);
289
292
  }
293
+ if (emissive !== undefined && _structure) {
294
+ newState.emissive = Emissive.remap(emissive, _structure);
295
+ }
290
296
  if (substance !== undefined && _structure) {
291
297
  newState.substance = Substance.remap(substance, _structure);
292
298
  }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -72,6 +72,7 @@ export declare const UnitsMeshParams: {
72
72
  scale: any;
73
73
  }>[];
74
74
  }>>;
75
+ emissive: PD.Numeric;
75
76
  instanceGranularity: PD.BooleanParam;
76
77
  lod: PD.Vec3;
77
78
  cellSize: PD.Numeric;
@@ -119,6 +120,7 @@ export declare const UnitsSpheresParams: {
119
120
  scale: any;
120
121
  }>[];
121
122
  }>>;
123
+ emissive: PD.Numeric;
122
124
  instanceGranularity: PD.BooleanParam;
123
125
  lod: PD.Vec3;
124
126
  cellSize: PD.Numeric;
@@ -158,6 +160,7 @@ export declare const UnitsCylindersParams: {
158
160
  scale: any;
159
161
  }>[];
160
162
  }>>;
163
+ emissive: PD.Numeric;
161
164
  instanceGranularity: PD.BooleanParam;
162
165
  lod: PD.Vec3;
163
166
  cellSize: PD.Numeric;
@@ -190,6 +193,7 @@ export declare const UnitsPointsParams: {
190
193
  scale: any;
191
194
  }>[];
192
195
  }>>;
196
+ emissive: PD.Numeric;
193
197
  instanceGranularity: PD.BooleanParam;
194
198
  lod: PD.Vec3;
195
199
  cellSize: PD.Numeric;
@@ -221,6 +225,7 @@ export declare const UnitsLinesParams: {
221
225
  scale: any;
222
226
  }>[];
223
227
  }>>;
228
+ emissive: PD.Numeric;
224
229
  instanceGranularity: PD.BooleanParam;
225
230
  lod: PD.Vec3;
226
231
  cellSize: PD.Numeric;
@@ -269,6 +274,7 @@ export declare const UnitsTextParams: {
269
274
  scale: any;
270
275
  }>[];
271
276
  }>>;
277
+ emissive: PD.Numeric;
272
278
  instanceGranularity: PD.BooleanParam;
273
279
  lod: PD.Vec3;
274
280
  cellSize: PD.Numeric;
@@ -303,6 +309,7 @@ export declare const UnitsDirectVolumeParams: {
303
309
  scale: any;
304
310
  }>[];
305
311
  }>>;
312
+ emissive: PD.Numeric;
306
313
  instanceGranularity: PD.BooleanParam;
307
314
  lod: PD.Vec3;
308
315
  cellSize: PD.Numeric;
@@ -340,6 +347,7 @@ export declare const UnitsTextureMeshParams: {
340
347
  scale: any;
341
348
  }>[];
342
349
  }>>;
350
+ emissive: PD.Numeric;
343
351
  instanceGranularity: PD.BooleanParam;
344
352
  lod: PD.Vec3;
345
353
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -337,6 +337,10 @@ export function UnitsVisual(builder, materialId) {
337
337
  const smoothing = { geometry, props: currentProps, webgl };
338
338
  Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
339
339
  },
340
+ setEmissive(emissive, webgl) {
341
+ const smoothing = { geometry, props: currentProps, webgl };
342
+ Visual.setEmissive(renderObject, emissive, lociApply, true, smoothing);
343
+ },
340
344
  setSubstance(substance, webgl) {
341
345
  const smoothing = { geometry, props: currentProps, webgl };
342
346
  Visual.setSubstance(renderObject, substance, lociApply, true, smoothing);