molstar 4.0.1 → 4.2.0

package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts

@@ -25,156 +25,156 @@ export type UnobsOrZeroOccResidues = Table<mmCIF_Schema['pdbx_unobs_or_zero_occ_
 export type Molecule = Table<mmCIF_Schema['pdbx_molecule']>;
 export declare const BasicSchema: {
     entry: {
-        id: import("../../../mol-data/db/column").Column.Schema.Str;
+        id: import("../../../mol-data/db").Column.Schema.Str;
     };
     struct: {
-        entry_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        title: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_descriptor: import("../../../mol-data/db/column").Column.Schema.Str;
+        entry_id: import("../../../mol-data/db").Column.Schema.Str;
+        title: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_descriptor: import("../../../mol-data/db").Column.Schema.Str;
     };
     struct_asym: {
-        details: import("../../../mol-data/db/column").Column.Schema.Str;
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        id: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_modified: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_blank_PDB_chainid_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
+        details: import("../../../mol-data/db").Column.Schema.Str;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        id: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_modified: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_blank_PDB_chainid_flag: import("../../../mol-data/db").Column.Schema.Aliased<"N" | "Y">;
     };
     ihm_model_list: {
-        model_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        model_name: import("../../../mol-data/db/column").Column.Schema.Str;
-        assembly_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        protocol_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        representation_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        model_id: import("../../../mol-data/db").Column.Schema.Int;
+        model_name: import("../../../mol-data/db").Column.Schema.Str;
+        assembly_id: import("../../../mol-data/db").Column.Schema.Int;
+        protocol_id: import("../../../mol-data/db").Column.Schema.Int;
+        representation_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     ihm_model_group: {
-        id: import("../../../mol-data/db/column").Column.Schema.Int;
-        name: import("../../../mol-data/db/column").Column.Schema.Str;
-        details: import("../../../mol-data/db/column").Column.Schema.Str;
+        id: import("../../../mol-data/db").Column.Schema.Int;
+        name: import("../../../mol-data/db").Column.Schema.Str;
+        details: import("../../../mol-data/db").Column.Schema.Str;
     };
     ihm_model_group_link: {
-        model_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        group_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        model_id: import("../../../mol-data/db").Column.Schema.Int;
+        group_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     entity: {
-        details: import("../../../mol-data/db/column").Column.Schema.Str;
-        formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
-        id: import("../../../mol-data/db/column").Column.Schema.Str;
-        src_method: import("../../../mol-data/db/column").Column.Schema.Aliased<"nat" | "man" | "syn">;
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"non-polymer" | "polymer" | "macrolide" | "water" | "branched">;
-        pdbx_description: import("../../../mol-data/db/column").Column.Schema.List<string>;
-        pdbx_number_of_molecules: import("../../../mol-data/db/column").Column.Schema.Int;
-        pdbx_mutation: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_fragment: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_ec: import("../../../mol-data/db/column").Column.Schema.List<string>;
+        details: import("../../../mol-data/db").Column.Schema.Str;
+        formula_weight: import("../../../mol-data/db").Column.Schema.Float;
+        id: import("../../../mol-data/db").Column.Schema.Str;
+        src_method: import("../../../mol-data/db").Column.Schema.Aliased<"nat" | "man" | "syn">;
+        type: import("../../../mol-data/db").Column.Schema.Aliased<"non-polymer" | "polymer" | "macrolide" | "water" | "branched">;
+        pdbx_description: import("../../../mol-data/db").Column.Schema.List<string>;
+        pdbx_number_of_molecules: import("../../../mol-data/db").Column.Schema.Int;
+        pdbx_mutation: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_fragment: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_ec: import("../../../mol-data/db").Column.Schema.List<string>;
     };
     entity_poly: {
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
-        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
-        pdbx_strand_id: import("../../../mol-data/db/column").Column.Schema.List<string>;
-        pdbx_seq_one_letter_code: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_seq_one_letter_code_can: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_target_identifier: import("../../../mol-data/db/column").Column.Schema.Str;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        nstd_linkage: import("../../../mol-data/db").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        nstd_monomer: import("../../../mol-data/db").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        type: import("../../../mol-data/db").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
+        pdbx_strand_id: import("../../../mol-data/db").Column.Schema.List<string>;
+        pdbx_seq_one_letter_code: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_seq_one_letter_code_can: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_target_identifier: import("../../../mol-data/db").Column.Schema.Str;
     };
     entity_poly_seq: {
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
-        mon_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        num: import("../../../mol-data/db/column").Column.Schema.Int;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        hetero: import("../../../mol-data/db").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        mon_id: import("../../../mol-data/db").Column.Schema.Str;
+        num: import("../../../mol-data/db").Column.Schema.Int;
     };
     pdbx_entity_branch: {
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"oligosaccharide">;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        type: import("../../../mol-data/db").Column.Schema.Aliased<"oligosaccharide">;
     };
     chem_comp: {
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "d-peptide linking" | "l-peptide linking" | "d-peptide nh3 amino terminus" | "l-peptide nh3 amino terminus" | "d-peptide cooh carboxy terminus" | "l-peptide cooh carboxy terminus" | "dna linking" | "rna linking" | "l-rna linking" | "l-dna linking" | "dna oh 5 prime terminus" | "rna oh 5 prime terminus" | "dna oh 3 prime terminus" | "rna oh 3 prime terminus" | "d-saccharide, beta linking" | "d-saccharide, alpha linking" | "l-saccharide, beta linking" | "l-saccharide, alpha linking" | "l-saccharide" | "d-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "l-gamma-peptide, c-delta linking" | "d-gamma-peptide, c-delta linking" | "l-beta-peptide, c-gamma linking" | "d-beta-peptide, c-gamma linking" | "ion" | "lipid">;
-        formula: import("../../../mol-data/db/column").Column.Schema.Str;
-        formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
-        id: import("../../../mol-data/db/column").Column.Schema.Str;
-        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
-        name: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_synonyms: import("../../../mol-data/db/column").Column.Schema.List<string>;
+        type: import("../../../mol-data/db").Column.Schema.Aliased<"other" | "d-peptide linking" | "l-peptide linking" | "d-peptide nh3 amino terminus" | "l-peptide nh3 amino terminus" | "d-peptide cooh carboxy terminus" | "l-peptide cooh carboxy terminus" | "dna linking" | "rna linking" | "l-rna linking" | "l-dna linking" | "dna oh 5 prime terminus" | "rna oh 5 prime terminus" | "dna oh 3 prime terminus" | "rna oh 3 prime terminus" | "d-saccharide, beta linking" | "d-saccharide, alpha linking" | "l-saccharide, beta linking" | "l-saccharide, alpha linking" | "l-saccharide" | "d-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "l-gamma-peptide, c-delta linking" | "d-gamma-peptide, c-delta linking" | "l-beta-peptide, c-gamma linking" | "d-beta-peptide, c-gamma linking" | "ion" | "lipid">;
+        formula: import("../../../mol-data/db").Column.Schema.Str;
+        formula_weight: import("../../../mol-data/db").Column.Schema.Float;
+        id: import("../../../mol-data/db").Column.Schema.Str;
+        mon_nstd_flag: import("../../../mol-data/db").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        name: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_synonyms: import("../../../mol-data/db").Column.Schema.List<string>;
     };
     pdbx_chem_comp_identifier: {
-        comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        identifier: import("../../../mol-data/db/column").Column.Schema.Str;
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"COMMON NAME" | "SYSTEMATIC NAME" | "CAS REGISTRY NUMBER" | "PUBCHEM Identifier" | "MDL Identifier" | "SYNONYM" | "CONDENSED IUPAC CARB SYMBOL" | "IUPAC CARB SYMBOL" | "SNFG CARB SYMBOL" | "CONDENSED IUPAC CARBOHYDRATE SYMBOL" | "IUPAC CARBOHYDRATE SYMBOL" | "SNFG CARBOHYDRATE SYMBOL">;
-        program: import("../../../mol-data/db/column").Column.Schema.Str;
-        program_version: import("../../../mol-data/db/column").Column.Schema.Str;
+        comp_id: import("../../../mol-data/db").Column.Schema.Str;
+        identifier: import("../../../mol-data/db").Column.Schema.Str;
+        type: import("../../../mol-data/db").Column.Schema.Aliased<"COMMON NAME" | "SYSTEMATIC NAME" | "CAS REGISTRY NUMBER" | "PUBCHEM Identifier" | "MDL Identifier" | "SYNONYM" | "CONDENSED IUPAC CARB SYMBOL" | "IUPAC CARB SYMBOL" | "SNFG CARB SYMBOL" | "CONDENSED IUPAC CARBOHYDRATE SYMBOL" | "IUPAC CARBOHYDRATE SYMBOL" | "SNFG CARBOHYDRATE SYMBOL">;
+        program: import("../../../mol-data/db").Column.Schema.Str;
+        program_version: import("../../../mol-data/db").Column.Schema.Str;
     };
     atom_site: {
-        auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        auth_atom_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        auth_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        B_iso_or_equiv: import("../../../mol-data/db/column").Column.Schema.Float;
-        Cartn_x: import("../../../mol-data/db/column").Column.Schema.Coordinate;
-        Cartn_y: import("../../../mol-data/db/column").Column.Schema.Coordinate;
-        Cartn_z: import("../../../mol-data/db/column").Column.Schema.Coordinate;
-        group_PDB: import("../../../mol-data/db/column").Column.Schema.Aliased<"ATOM" | "HETATM">;
-        id: import("../../../mol-data/db/column").Column.Schema.Int;
-        label_alt_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_atom_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        occupancy: import("../../../mol-data/db/column").Column.Schema.Float;
-        type_symbol: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_PDB_ins_code: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
-        pdbx_formal_charge: import("../../../mol-data/db/column").Column.Schema.Int;
-        pdbx_label_index: import("../../../mol-data/db/column").Column.Schema.Int;
-        pdbx_sifts_xref_db_name: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_sifts_xref_db_acc: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_sifts_xref_db_num: import("../../../mol-data/db/column").Column.Schema.Str;
-        pdbx_sifts_xref_db_res: import("../../../mol-data/db/column").Column.Schema.Str;
-        ihm_model_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        auth_asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        auth_atom_id: import("../../../mol-data/db").Column.Schema.Str;
+        auth_comp_id: import("../../../mol-data/db").Column.Schema.Str;
+        auth_seq_id: import("../../../mol-data/db").Column.Schema.Int;
+        B_iso_or_equiv: import("../../../mol-data/db").Column.Schema.Float;
+        Cartn_x: import("../../../mol-data/db").Column.Schema.Coordinate;
+        Cartn_y: import("../../../mol-data/db").Column.Schema.Coordinate;
+        Cartn_z: import("../../../mol-data/db").Column.Schema.Coordinate;
+        group_PDB: import("../../../mol-data/db").Column.Schema.Aliased<"ATOM" | "HETATM">;
+        id: import("../../../mol-data/db").Column.Schema.Int;
+        label_alt_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_atom_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_comp_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_seq_id: import("../../../mol-data/db").Column.Schema.Int;
+        occupancy: import("../../../mol-data/db").Column.Schema.Float;
+        type_symbol: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_PDB_ins_code: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_PDB_model_num: import("../../../mol-data/db").Column.Schema.Int;
+        pdbx_formal_charge: import("../../../mol-data/db").Column.Schema.Int;
+        pdbx_label_index: import("../../../mol-data/db").Column.Schema.Int;
+        pdbx_sifts_xref_db_name: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_sifts_xref_db_acc: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_sifts_xref_db_num: import("../../../mol-data/db").Column.Schema.Str;
+        pdbx_sifts_xref_db_res: import("../../../mol-data/db").Column.Schema.Str;
+        ihm_model_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     ihm_sphere_obj_site: {
-        id: import("../../../mol-data/db/column").Column.Schema.Int;
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        seq_id_begin: import("../../../mol-data/db/column").Column.Schema.Int;
-        seq_id_end: import("../../../mol-data/db/column").Column.Schema.Int;
-        asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        Cartn_x: import("../../../mol-data/db/column").Column.Schema.Float;
-        Cartn_y: import("../../../mol-data/db/column").Column.Schema.Float;
-        Cartn_z: import("../../../mol-data/db/column").Column.Schema.Float;
-        object_radius: import("../../../mol-data/db/column").Column.Schema.Float;
-        rmsf: import("../../../mol-data/db/column").Column.Schema.Float;
-        model_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        id: import("../../../mol-data/db").Column.Schema.Int;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        seq_id_begin: import("../../../mol-data/db").Column.Schema.Int;
+        seq_id_end: import("../../../mol-data/db").Column.Schema.Int;
+        asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        Cartn_x: import("../../../mol-data/db").Column.Schema.Float;
+        Cartn_y: import("../../../mol-data/db").Column.Schema.Float;
+        Cartn_z: import("../../../mol-data/db").Column.Schema.Float;
+        object_radius: import("../../../mol-data/db").Column.Schema.Float;
+        rmsf: import("../../../mol-data/db").Column.Schema.Float;
+        model_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     ihm_gaussian_obj_site: {
-        id: import("../../../mol-data/db/column").Column.Schema.Int;
-        entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        seq_id_begin: import("../../../mol-data/db/column").Column.Schema.Int;
-        seq_id_end: import("../../../mol-data/db/column").Column.Schema.Int;
-        asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        mean_Cartn_x: import("../../../mol-data/db/column").Column.Schema.Float;
-        mean_Cartn_y: import("../../../mol-data/db/column").Column.Schema.Float;
-        mean_Cartn_z: import("../../../mol-data/db/column").Column.Schema.Float;
-        weight: import("../../../mol-data/db/column").Column.Schema.Float;
-        covariance_matrix: import("../../../mol-data/db/column").Column.Schema.Tensor;
-        model_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        id: import("../../../mol-data/db").Column.Schema.Int;
+        entity_id: import("../../../mol-data/db").Column.Schema.Str;
+        seq_id_begin: import("../../../mol-data/db").Column.Schema.Int;
+        seq_id_end: import("../../../mol-data/db").Column.Schema.Int;
+        asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        mean_Cartn_x: import("../../../mol-data/db").Column.Schema.Float;
+        mean_Cartn_y: import("../../../mol-data/db").Column.Schema.Float;
+        mean_Cartn_z: import("../../../mol-data/db").Column.Schema.Float;
+        weight: import("../../../mol-data/db").Column.Schema.Float;
+        covariance_matrix: import("../../../mol-data/db").Column.Schema.Tensor;
+        model_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     pdbx_unobs_or_zero_occ_residues: {
-        id: import("../../../mol-data/db/column").Column.Schema.Int;
-        polymer_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "n">;
-        occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"1" | "0">;
-        PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
-        auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        auth_seq_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        PDB_ins_code: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        label_seq_id: import("../../../mol-data/db/column").Column.Schema.Int;
+        id: import("../../../mol-data/db").Column.Schema.Int;
+        polymer_flag: import("../../../mol-data/db").Column.Schema.Aliased<"y" | "n">;
+        occupancy_flag: import("../../../mol-data/db").Column.Schema.Aliased<"1" | "0">;
+        PDB_model_num: import("../../../mol-data/db").Column.Schema.Int;
+        auth_asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        auth_comp_id: import("../../../mol-data/db").Column.Schema.Str;
+        auth_seq_id: import("../../../mol-data/db").Column.Schema.Str;
+        PDB_ins_code: import("../../../mol-data/db").Column.Schema.Str;
+        label_asym_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_comp_id: import("../../../mol-data/db").Column.Schema.Str;
+        label_seq_id: import("../../../mol-data/db").Column.Schema.Int;
     };
     pdbx_molecule: {
-        prd_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        instance_id: import("../../../mol-data/db/column").Column.Schema.Int;
-        asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
+        prd_id: import("../../../mol-data/db").Column.Schema.Str;
+        instance_id: import("../../../mol-data/db").Column.Schema.Int;
+        asym_id: import("../../../mol-data/db").Column.Schema.Str;
     };
 };
 export interface BasicData {

package/lib/commonjs/mol-model-formats/structure/common/component.d.ts

@@ -26,7 +26,7 @@ export declare class ComponentBuilder {
         mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "name" | "type" | "id">> | undefined;
+    }, "id" | "name" | "type">> | undefined;
     add(compId: string, index: number): Table.Row<Pick<{
         type: Column.Schema.Aliased<"other" | "d-peptide linking" | "l-peptide linking" | "d-peptide nh3 amino terminus" | "l-peptide nh3 amino terminus" | "d-peptide cooh carboxy terminus" | "l-peptide cooh carboxy terminus" | "dna linking" | "rna linking" | "l-rna linking" | "l-dna linking" | "dna oh 5 prime terminus" | "rna oh 5 prime terminus" | "dna oh 3 prime terminus" | "rna oh 3 prime terminus" | "d-saccharide, beta linking" | "d-saccharide, alpha linking" | "l-saccharide, beta linking" | "l-saccharide, alpha linking" | "l-saccharide" | "d-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "l-gamma-peptide, c-delta linking" | "d-gamma-peptide, c-delta linking" | "l-beta-peptide, c-gamma linking" | "d-beta-peptide, c-gamma linking" | "ion" | "lipid">;
         formula: Column.Schema.Str;
@@ -35,7 +35,7 @@ export declare class ComponentBuilder {
         mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "name" | "type" | "id">>;
+    }, "id" | "name" | "type">>;
     getChemCompTable(): Table<{
         type: Column.Schema.Aliased<"other" | "d-peptide linking" | "l-peptide linking" | "d-peptide nh3 amino terminus" | "l-peptide nh3 amino terminus" | "d-peptide cooh carboxy terminus" | "l-peptide cooh carboxy terminus" | "dna linking" | "rna linking" | "l-rna linking" | "l-dna linking" | "dna oh 5 prime terminus" | "rna oh 5 prime terminus" | "dna oh 3 prime terminus" | "rna oh 3 prime terminus" | "d-saccharide, beta linking" | "d-saccharide, alpha linking" | "l-saccharide, beta linking" | "l-saccharide, alpha linking" | "l-saccharide" | "d-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "l-gamma-peptide, c-delta linking" | "d-gamma-peptide, c-delta linking" | "l-beta-peptide, c-gamma linking" | "d-beta-peptide, c-gamma linking" | "ion" | "lipid">;
         formula: Column.Schema.Str;

package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2023 Mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2024 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -22,6 +22,7 @@ export type IndexPairs = IntAdjacencyGraph<ElementIndex, IndexPairsProps>;
 export type IndexPairBonds = {
     bonds: IndexPairs;
     maxDistance: number;
+    cacheable: boolean;
 };
 export declare namespace IndexPairBonds {
     const Descriptor: CustomPropertyDescriptor;
@@ -58,6 +59,8 @@ export declare namespace IndexPairBonds {
          * for each bond individually which takes precedence over this option.
          */
         maxDistance: number;
+        /** Can be cached in `ElementSetIntraBondCache` */
+        cacheable: boolean;
     };
     type Props = typeof DefaultProps;
     function fromData(data: Data, props?: Partial<Props>): IndexPairBonds;

package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2023 Mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2024 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -43,7 +43,9 @@ var IndexPairBonds;
          * Note that `Data` has a `distance` field which allows specifying a distance
          * for each bond individually which takes precedence over this option.
          */
-        maxDistance: -1
+        maxDistance: -1,
+        /** Can be cached in `ElementSetIntraBondCache` */
+        cacheable: true,
     };
     function fromData(data, props = {}) {
         const p = { ...IndexPairBonds.DefaultProps, ...props };
@@ -58,7 +60,8 @@ var IndexPairBonds;
         const flag = pairs.flag && pairs.flag.toArray();
         return {
             bonds: getGraph(indexA, indexB, { key, operatorA, operatorB, order, distance, flag }, count),
-            maxDistance: p.maxDistance
+            maxDistance: p.maxDistance,
+            cacheable: p.cacheable,
         };
     }
     IndexPairBonds.fromData = fromData;

package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts

@@ -49,6 +49,7 @@ export declare const InteractionsInterUnitParams: {
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;

package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts

@@ -49,6 +49,7 @@ export declare const InteractionsIntraUnitParams: {
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;

package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts

@@ -53,6 +53,7 @@ export declare const InteractionsParams: {
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;
@@ -104,6 +105,7 @@ export declare function getInteractionParams(ctx: ThemeRegistryContext, structur
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;
@@ -156,6 +158,7 @@ export declare const InteractionsRepresentationProvider: StructureRepresentation
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;

package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts

@@ -51,6 +51,7 @@ export declare const CrossLinkRestraintCylinderParams: {
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;
@@ -99,6 +100,7 @@ export declare const CrossLinkRestraintParams: {
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;
@@ -146,6 +148,7 @@ export declare function getCrossLinkRestraintParams(ctx: ThemeRegistryContext, s
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;
@@ -194,6 +197,7 @@ export declare const CrossLinkRestraintRepresentationProvider: StructureRepresen
             scale: any;
         }>[];
     }>>;
+    emissive: PD.Numeric;
     instanceGranularity: PD.BooleanParam;
     lod: PD.Vec3;
     cellSize: PD.Numeric;

package/lib/commonjs/mol-plugin/behavior/behavior.d.ts

@@ -24,14 +24,14 @@ declare namespace PluginBehavior {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../../mol-util/uuid").UUID;
+            id: import("../../mol-util").UUID;
             type: PluginStateObject.TypeInfo;
             label: string;
             description?: string | undefined;
             data: {};
         };
         type: PluginStateObject.TypeInfo;
-        is(obj?: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined): obj is import("../../mol-state/object").StateObject<{}, PluginStateObject.TypeInfo>;
+        is(obj?: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined): obj is import("../../mol-state").StateObject<{}, PluginStateObject.TypeInfo>;
     };
     export class Root extends Root_base {
     }
@@ -40,14 +40,14 @@ declare namespace PluginBehavior {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../../mol-util/uuid").UUID;
+            id: import("../../mol-util").UUID;
             type: PluginStateObject.TypeInfo;
             label: string;
             description?: string | undefined;
             data: {};
         };
         type: PluginStateObject.TypeInfo;
-        is(obj?: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined): obj is import("../../mol-state/object").StateObject<{}, PluginStateObject.TypeInfo>;
+        is(obj?: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined): obj is import("../../mol-state").StateObject<{}, PluginStateObject.TypeInfo>;
     };
     export class Category extends Category_base {
     }
@@ -56,14 +56,14 @@ declare namespace PluginBehavior {
             label: string;
             description?: string | undefined;
         } | undefined): {
-            id: import("../../mol-util/uuid").UUID;
+            id: import("../../mol-util").UUID;
             type: PluginStateObject.TypeInfo;
             label: string;
             description?: string | undefined;
             data: PluginBehavior<unknown>;
         };
         type: PluginStateObject.TypeInfo;
-        is(obj?: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined): obj is import("../../mol-state/object").StateObject<PluginBehavior<unknown>, PluginStateObject.TypeInfo>;
+        is(obj?: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined): obj is import("../../mol-state").StateObject<PluginBehavior<unknown>, PluginStateObject.TypeInfo>;
     };
     export class Behavior extends Behavior_base {
     }

package/lib/commonjs/mol-plugin/behavior/dynamic/camera.d.ts

@@ -17,14 +17,14 @@ type FocusLociBindings = {
     clickResetCameraOnEmptySelectMode?: Binding;
 };
 export declare const DefaultFocusLociBindings: FocusLociBindings;
-export declare const FocusLoci: import("../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, PD.Values<{
+export declare const FocusLoci: import("../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, PD.Values<{
     minRadius: PD.Numeric;
     extraRadius: PD.Numeric;
     durationMs: PD.Numeric;
     bindings: PD.Value<FocusLociBindings>;
 }>>;
-export declare const CameraAxisHelper: import("../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
-export declare const CameraControls: import("../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, PD.Values<{
+export declare const CameraAxisHelper: import("../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
+export declare const CameraControls: import("../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, PD.Values<{
     bindings: PD.Value<{
         keySpinAnimation: Binding;
         keyRockAnimation: Binding;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.d.ts

@@ -4,7 +4,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const AccessibleSurfaceArea: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
+export declare const AccessibleSurfaceArea: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
     autoAttach: boolean;
     showTooltip: boolean;
 }>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.d.ts

@@ -4,7 +4,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const Interactions: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
+export declare const Interactions: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
     autoAttach: boolean;
     showTooltip: boolean;
 }>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.d.ts

@@ -4,6 +4,6 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const SecondaryStructure: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
+export declare const SecondaryStructure: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
     autoAttach: boolean;
 }>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.d.ts

@@ -4,7 +4,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const ValenceModel: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
+export declare const ValenceModel: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
     autoAttach: boolean;
     showTooltip: boolean;
 }>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.d.ts

@@ -4,4 +4,4 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const CrossLinkRestraint: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
+export declare const CrossLinkRestraint: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.d.ts

@@ -4,7 +4,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 import { PluginBehavior } from '../../../behavior';
-export declare const SIFTSMapping: import("../../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
+export declare const SIFTSMapping: import("../../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {
     autoAttach: boolean;
     showTooltip: boolean;
 }>;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.d.ts

@@ -4,4 +4,4 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { PluginBehavior } from '../../../behavior/behavior';
-export declare const StructureInfo: import("../../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;
+export declare const StructureInfo: import("../../../../mol-state").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, {}>;