molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
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  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193
@@ -1,89 +1,89 @@
1
-
2
- // measures
3
-
4
- $control-label-width: 110px;
5
- $control-label-short-width: 70px;
6
- $row-height: 32px;
7
- $control-spacing: 10px;
8
- $entity-subtree-offset: 8px;
9
- $info-vertical-padding: 3px;
10
- $slider-border-radius-base: 6px;
11
-
12
- // layout
13
- $expanded-top-height: 100px;
14
- $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
- $expanded-right-width: 300px;
16
- $expanded-left-width: 330px;
17
-
18
- $collapsed-left-width: $row-height;
19
-
20
- $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
- $expanded-portrait-top-height: 3 * $row-height + 1;
22
-
23
- $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
- $standard-top-height: 3 * $row-height + 1;
25
-
26
-
27
- $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
- $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
- $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
- $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
- $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
- $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
- $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
-
35
- // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
-
37
- $type-class-Root: $default-background;
38
- $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
- $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
- $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
- $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
- $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
-
44
- //////////////////////////////////////////////////
45
- // COLORS and COMPUTED COLORS
46
-
47
- $slider-disabledColor: #ccc;
48
-
49
- $control-background: color-increase-contrast($default-background, 6.5%);
50
- $border-color: color-increase-contrast($default-background, 15%);
51
- $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
-
53
- // buttons
54
- $msp-btn-link-font-color: $font-color;
55
- $msp-btn-link-toggle-on-font-color: $font-color;
56
- $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
-
58
- // used for "actions" -- i.e. + in selection
59
- $msp-btn-remove-font-color: $font-color;
60
-
61
- $msp-btn-action-background: $msp-form-control-background;
62
-
63
- // update selection etc
64
- //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
- $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
- $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
- $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
- $msp-btn-commit-off-font-color: $font-color;
69
-
70
- // log
71
- $log-font-color: color-lower-contrast($font-color, 5%);
72
- $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
-
74
- // highlight
75
- $highlight-info-font-color: $hover-font-color;
76
- $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
-
78
- // entity state
79
- $entity-color-fully-visible: $font-color;
80
- $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
- $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
- $entity-tag-color: color-lower-contrast($font-color, 20%);
83
-
84
- // sequence
85
- $sequence-background: $default-background;
86
- $sequence-number-color: $hover-font-color;
87
-
88
- // state
1
+
2
+ // measures
3
+
4
+ $control-label-width: 110px;
5
+ $control-label-short-width: 70px;
6
+ $row-height: 32px;
7
+ $control-spacing: 10px;
8
+ $entity-subtree-offset: 8px;
9
+ $info-vertical-padding: 3px;
10
+ $slider-border-radius-base: 6px;
11
+
12
+ // layout
13
+ $expanded-top-height: 100px;
14
+ $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
+ $expanded-right-width: 300px;
16
+ $expanded-left-width: 330px;
17
+
18
+ $collapsed-left-width: $row-height;
19
+
20
+ $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
+ $expanded-portrait-top-height: 3 * $row-height + 1;
22
+
23
+ $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
+ $standard-top-height: 3 * $row-height + 1;
25
+
26
+
27
+ $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
+ $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
+ $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
+ $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
+ $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
+ $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
+ $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
+
35
+ // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
+
37
+ $type-class-Root: $default-background;
38
+ $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
+ $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
+ $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
+ $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
+ $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
+
44
+ //////////////////////////////////////////////////
45
+ // COLORS and COMPUTED COLORS
46
+
47
+ $slider-disabledColor: #ccc;
48
+
49
+ $control-background: color-increase-contrast($default-background, 6.5%);
50
+ $border-color: color-increase-contrast($default-background, 15%);
51
+ $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
+
53
+ // buttons
54
+ $msp-btn-link-font-color: $font-color;
55
+ $msp-btn-link-toggle-on-font-color: $font-color;
56
+ $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
+
58
+ // used for "actions" -- i.e. + in selection
59
+ $msp-btn-remove-font-color: $font-color;
60
+
61
+ $msp-btn-action-background: $msp-form-control-background;
62
+
63
+ // update selection etc
64
+ //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
+ $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
+ $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
+ $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
+ $msp-btn-commit-off-font-color: $font-color;
69
+
70
+ // log
71
+ $log-font-color: color-lower-contrast($font-color, 5%);
72
+ $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
+
74
+ // highlight
75
+ $highlight-info-font-color: $hover-font-color;
76
+ $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
+
78
+ // entity state
79
+ $entity-color-fully-visible: $font-color;
80
+ $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
+ $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
+ $entity-tag-color: color-lower-contrast($font-color, 20%);
83
+
84
+ // sequence
85
+ $sequence-background: $default-background;
86
+ $sequence-number-color: $hover-font-color;
87
+
88
+ // state
89
89
  $state-image-height: 96px;
@@ -1,2 +1,2 @@
1
- @import 'colors/blue';
1
+ @import 'colors/blue';
2
2
  @import 'base/base';
@@ -1,24 +1,24 @@
1
- $default-background: #2D3E50;
2
- $font-color: #EDF1F2;
3
- $hover-font-color: #3B9AD9;
4
- $entity-current-font-color: #FFFFFF;
5
- $msp-btn-remove-background: #BF3A31;
6
- $msp-btn-remove-hover-font-color:#ffffff;
7
- $msp-btn-commit-on-font-color: #ffffff;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #2D3E50;
2
+ $font-color: #EDF1F2;
3
+ $hover-font-color: #3B9AD9;
4
+ $entity-current-font-color: #FFFFFF;
5
+ $msp-btn-remove-background: #BF3A31;
6
+ $msp-btn-remove-hover-font-color:#ffffff;
7
+ $msp-btn-commit-on-font-color: #ffffff;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,24 +1,24 @@
1
- $default-background: #111318;
2
- $font-color: #ccd4e0;
3
- $hover-font-color: #51A2FB;
4
- $entity-current-font-color: #68BEFD;
5
- $msp-btn-remove-background: #DE0A28;
6
- $msp-btn-remove-hover-font-color:#F2F4F7;
7
- $msp-btn-commit-on-font-color: #68BEFD;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #111318;
2
+ $font-color: #ccd4e0;
3
+ $hover-font-color: #51A2FB;
4
+ $entity-current-font-color: #68BEFD;
5
+ $msp-btn-remove-background: #DE0A28;
6
+ $msp-btn-remove-hover-font-color:#F2F4F7;
7
+ $msp-btn-commit-on-font-color: #68BEFD;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,30 +1,30 @@
1
- // this is complement of the dark theme
2
-
3
- @function compl($color) {
4
- @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
- }
6
-
7
- $default-background: compl(#111318);
8
- $font-color: compl(#ccd4e0);
9
- $hover-font-color: compl(#51A2FB);
10
- $entity-current-font-color: compl(#68BEFD);
11
- $msp-btn-commit-on-font-color: compl(#68BEFD);
12
- $entity-badge-font-color: lighten(#ccd4e0,10%);
13
- $msp-btn-remove-background: #DE0A28;
14
- $msp-btn-remove-hover-font-color:#F2F4F7;
15
-
16
- // used in LOG
17
- $log-message: #0CCA5D;
18
- $log-info: #5E3673;
19
- $log-warning: #FCC937;
20
- $log-error: #FD354B;
21
-
22
- $logo-background: compl(#111318);
23
-
24
- @function color-lower-contrast($color, $amount) {
25
- @return lighten($color, $amount);
26
- }
27
-
28
- @function color-increase-contrast($color, $amount) {
29
- @return darken($color, $amount);
1
+ // this is complement of the dark theme
2
+
3
+ @function compl($color) {
4
+ @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
+ }
6
+
7
+ $default-background: compl(#111318);
8
+ $font-color: compl(#ccd4e0);
9
+ $hover-font-color: compl(#51A2FB);
10
+ $entity-current-font-color: compl(#68BEFD);
11
+ $msp-btn-commit-on-font-color: compl(#68BEFD);
12
+ $entity-badge-font-color: lighten(#ccd4e0,10%);
13
+ $msp-btn-remove-background: #DE0A28;
14
+ $msp-btn-remove-hover-font-color:#F2F4F7;
15
+
16
+ // used in LOG
17
+ $log-message: #0CCA5D;
18
+ $log-info: #5E3673;
19
+ $log-warning: #FCC937;
20
+ $log-error: #FD354B;
21
+
22
+ $logo-background: compl(#111318);
23
+
24
+ @function color-lower-contrast($color, $amount) {
25
+ @return lighten($color, $amount);
26
+ }
27
+
28
+ @function color-increase-contrast($color, $amount) {
29
+ @return darken($color, $amount);
30
30
  }
@@ -1,2 +1,2 @@
1
- @import 'colors/dark';
1
+ @import 'colors/dark';
2
2
  @import 'base/base';
@@ -1,2 +1,2 @@
1
- @import 'colors/light';
1
+ @import 'colors/light';
2
2
  @import 'base/base';
@@ -34,7 +34,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
34
34
  initialValues: any;
35
35
  isEmpty: boolean;
36
36
  };
37
- getTransformerId(): import("../../mol-state/transformer").StateTransformer.Id;
37
+ getTransformerId(): import("../../mol-state").StateTransformer.Id;
38
38
  getHeader(): "none" | {
39
39
  readonly name: string;
40
40
  readonly description?: string | undefined;
@@ -44,7 +44,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
44
44
  applyText(): string;
45
45
  isUpdate(): boolean;
46
46
  getSourceAndTarget(): {
47
- a: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
47
+ a: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
48
48
  };
49
49
  private _getInfo;
50
50
  state: ApplyActionControl.ComponentState;
@@ -36,9 +36,9 @@ declare class UpdateTransformControl extends TransformControlBase<UpdateTransfor
36
36
  applyText(): "Update" | "Nothing to Update";
37
37
  isUpdate(): boolean;
38
38
  getSourceAndTarget(): {
39
- a: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
40
- b: import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>> | undefined;
41
- bCell: import("../../mol-state/object").StateObjectCell<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, StateTransform<StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>> | undefined;
39
+ a: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
40
+ b: import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>> | undefined;
41
+ bCell: import("../../mol-state").StateObjectCell<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, StateTransform<StateTransformer<import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, import("../../mol-state").StateObject<any, import("../../mol-state").StateObject.Type<any>>, any>>> | undefined;
42
42
  };
43
43
  canAutoApply(newParams: any): boolean;
44
44
  componentDidMount(): void;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -22,6 +22,7 @@ import { BaseGeometry } from '../mol-geo/geometry/base';
22
22
  import { CustomProperty } from '../mol-model-props/common/custom-property';
23
23
  import { Clipping } from '../mol-theme/clipping';
24
24
  import { Substance } from '../mol-theme/substance';
25
+ import { Emissive } from '../mol-theme/emissive';
25
26
  export type RepresentationProps = {
26
27
  [k: string]: any;
27
28
  };
@@ -130,14 +131,17 @@ declare namespace Representation {
130
131
  overpaint: Overpaint;
131
132
  /** Per group transparency applied to the representation's renderobjects */
132
133
  transparency: Transparency;
134
+ /** Per group emissive applied to the representation's renderobjects */
135
+ emissive: Emissive;
133
136
  /** Per group material applied to the representation's renderobjects */
134
137
  substance: Substance;
135
138
  /** Bit mask of per group clipping applied to the representation's renderobjects */
136
139
  clipping: Clipping;
137
- /** Strength of the representations overpaint, transparency, substance*/
140
+ /** Strength of the representations overpaint, transparency, emmissive substance*/
138
141
  themeStrength: {
139
142
  overpaint: number;
140
143
  transparency: number;
144
+ emissive: number;
141
145
  substance: number;
142
146
  };
143
147
  /** Controls if the representation's renderobjects are synced automatically with GPU or not */
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -21,6 +21,7 @@ import { Clipping } from '../mol-theme/clipping';
21
21
  import { SetUtils } from '../mol-util/set';
22
22
  import { cantorPairing } from '../mol-data/util';
23
23
  import { Substance } from '../mol-theme/substance';
24
+ import { Emissive } from '../mol-theme/emissive';
24
25
  export var RepresentationProvider;
25
26
  (function (RepresentationProvider) {
26
27
  function getDetaultParams(r, ctx, data) {
@@ -117,9 +118,10 @@ var Representation;
117
118
  transform: Mat4.identity(),
118
119
  overpaint: Overpaint.Empty,
119
120
  transparency: Transparency.Empty,
121
+ emissive: Emissive.Empty,
120
122
  substance: Substance.Empty,
121
123
  clipping: Clipping.Empty,
122
- themeStrength: { overpaint: 1, transparency: 1, substance: 1 },
124
+ themeStrength: { overpaint: 1, transparency: 1, emissive: 1, substance: 1 },
123
125
  markerActions: MarkerActions.All
124
126
  };
125
127
  }
@@ -137,6 +139,8 @@ var Representation;
137
139
  state.overpaint = update.overpaint;
138
140
  if (update.transparency !== undefined)
139
141
  state.transparency = update.transparency;
142
+ if (update.emissive !== undefined)
143
+ state.emissive = update.emissive;
140
144
  if (update.substance !== undefined)
141
145
  state.substance = update.substance;
142
146
  if (update.clipping !== undefined)
@@ -367,9 +371,15 @@ var Representation;
367
371
  if (state.transparency !== undefined) {
368
372
  // TODO
369
373
  }
374
+ if (state.emissive !== undefined) {
375
+ // TODO
376
+ }
370
377
  if (state.substance !== undefined) {
371
378
  // TODO
372
379
  }
380
+ if (state.clipping !== undefined) {
381
+ // TODO
382
+ }
373
383
  if (state.themeStrength !== undefined)
374
384
  Visual.setThemeStrength(renderObject, state.themeStrength);
375
385
  if (state.transform !== undefined)
@@ -50,6 +50,7 @@ export declare const AngleParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const LociLabelTextParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -50,6 +50,7 @@ export declare const DihedralParams: {
50
50
  scale: any;
51
51
  }>[];
52
52
  }>>;
53
+ emissive: PD.Numeric;
53
54
  instanceGranularity: PD.BooleanParam;
54
55
  lod: PD.Vec3;
55
56
  cellSize: PD.Numeric;
@@ -51,6 +51,7 @@ export declare const DistanceParams: {
51
51
  scale: any;
52
52
  }>[];
53
53
  }>>;
54
+ emissive: PD.Numeric;
54
55
  instanceGranularity: PD.BooleanParam;
55
56
  lod: PD.Vec3;
56
57
  cellSize: PD.Numeric;
@@ -57,6 +57,7 @@ export declare const LabelParams: {
57
57
  scale: any;
58
58
  }>[];
59
59
  }>>;
60
+ emissive: PD.Numeric;
60
61
  instanceGranularity: PD.BooleanParam;
61
62
  lod: PD.Vec3;
62
63
  cellSize: PD.Numeric;
@@ -39,6 +39,7 @@ export declare const OrientationParams: {
39
39
  scale: any;
40
40
  }>[];
41
41
  }>>;
42
+ emissive: PD.Numeric;
42
43
  instanceGranularity: PD.BooleanParam;
43
44
  lod: PD.Vec3;
44
45
  cellSize: PD.Numeric;
@@ -38,6 +38,7 @@ export declare const PlaneParams: {
38
38
  scale: any;
39
39
  }>[];
40
40
  }>>;
41
+ emissive: PD.Numeric;
41
42
  instanceGranularity: PD.BooleanParam;
42
43
  lod: PD.Vec3;
43
44
  cellSize: PD.Numeric;
@@ -41,6 +41,7 @@ export declare const UnitcellParams: {
41
41
  scale: any;
42
42
  }>[];
43
43
  }>>;
44
+ emissive: PD.Numeric;
44
45
  instanceGranularity: PD.BooleanParam;
45
46
  lod: PD.Vec3;
46
47
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -18,6 +18,7 @@ import { Overpaint } from '../../mol-theme/overpaint';
18
18
  import { Clipping } from '../../mol-theme/clipping';
19
19
  import { Transparency } from '../../mol-theme/transparency';
20
20
  import { Substance } from '../../mol-theme/substance';
21
+ import { Emissive } from '../../mol-theme/emissive';
21
22
  export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
22
23
  let version = 0;
23
24
  const { webgl } = ctx;
@@ -120,6 +121,11 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
120
121
  const remappedTransparency = Transparency.remap(state.transparency, _structure);
121
122
  visual.setTransparency(remappedTransparency, webgl);
122
123
  }
124
+ if (state.emissive !== undefined && visual) {
125
+ // Remap loci from equivalent structure to the current structure
126
+ const remappedEmissive = Emissive.remap(state.emissive, _structure);
127
+ visual.setEmissive(remappedEmissive, webgl);
128
+ }
123
129
  if (state.substance !== undefined && visual) {
124
130
  // Remap loci from equivalent structure to the current structure
125
131
  const remappedSubstance = Substance.remap(state.substance, _structure);
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -69,6 +69,7 @@ export declare const ComplexMeshParams: {
69
69
  scale: any;
70
70
  }>[];
71
71
  }>>;
72
+ emissive: PD.Numeric;
72
73
  instanceGranularity: PD.BooleanParam;
73
74
  lod: PD.Vec3;
74
75
  cellSize: PD.Numeric;
@@ -116,6 +117,7 @@ export declare const ComplexSpheresParams: {
116
117
  scale: any;
117
118
  }>[];
118
119
  }>>;
120
+ emissive: PD.Numeric;
119
121
  instanceGranularity: PD.BooleanParam;
120
122
  lod: PD.Vec3;
121
123
  cellSize: PD.Numeric;
@@ -155,6 +157,7 @@ export declare const ComplexCylindersParams: {
155
157
  scale: any;
156
158
  }>[];
157
159
  }>>;
160
+ emissive: PD.Numeric;
158
161
  instanceGranularity: PD.BooleanParam;
159
162
  lod: PD.Vec3;
160
163
  cellSize: PD.Numeric;
@@ -186,6 +189,7 @@ export declare const ComplexLinesParams: {
186
189
  scale: any;
187
190
  }>[];
188
191
  }>>;
192
+ emissive: PD.Numeric;
189
193
  instanceGranularity: PD.BooleanParam;
190
194
  lod: PD.Vec3;
191
195
  cellSize: PD.Numeric;
@@ -234,6 +238,7 @@ export declare const ComplexTextParams: {
234
238
  scale: any;
235
239
  }>[];
236
240
  }>>;
241
+ emissive: PD.Numeric;
237
242
  instanceGranularity: PD.BooleanParam;
238
243
  lod: PD.Vec3;
239
244
  cellSize: PD.Numeric;
@@ -268,6 +273,7 @@ export declare const ComplexDirectVolumeParams: {
268
273
  scale: any;
269
274
  }>[];
270
275
  }>>;
276
+ emissive: PD.Numeric;
271
277
  instanceGranularity: PD.BooleanParam;
272
278
  lod: PD.Vec3;
273
279
  cellSize: PD.Numeric;
@@ -305,6 +311,7 @@ export declare const ComplexTextureMeshParams: {
305
311
  scale: any;
306
312
  }>[];
307
313
  }>>;
314
+ emissive: PD.Numeric;
308
315
  instanceGranularity: PD.BooleanParam;
309
316
  lod: PD.Vec3;
310
317
  cellSize: PD.Numeric;