molstar 4.0.1 → 4.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (907) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +8 -8
  9. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  10. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  13. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  14. package/lib/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  16. package/lib/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +19 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +14 -2
  22. package/lib/apps/mesoscale-explorer/index.html +100 -100
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +23 -4
  26. package/lib/apps/viewer/app.d.ts +30 -24
  27. package/lib/apps/viewer/app.js +6 -6
  28. package/lib/apps/viewer/embedded.html +52 -52
  29. package/lib/apps/viewer/index.html +129 -129
  30. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  31. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  32. package/lib/cli/chem-comp-dict/util.d.ts +112 -112
  33. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  34. package/lib/cli/cifschema/util/generate.js +12 -12
  35. package/lib/cli/lipid-params/index.js +9 -9
  36. package/lib/cli/mvs/mvs-print-schema.d.ts +1 -0
  37. package/lib/cli/mvs/mvs-print-schema.js +1 -0
  38. package/lib/cli/mvs/mvs-render.d.ts +1 -0
  39. package/lib/cli/mvs/mvs-render.js +1 -0
  40. package/lib/cli/mvs/mvs-validate.d.ts +1 -0
  41. package/lib/cli/mvs/mvs-validate.js +1 -0
  42. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +8 -8
  43. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +1 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -1
  45. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.d.ts +2 -2
  46. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.d.ts +1 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +5 -5
  48. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.d.ts +1 -1
  49. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +3 -3
  50. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.d.ts +1 -1
  51. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +3 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.d.ts +1 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +3 -3
  54. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +19 -10
  55. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +15 -3
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +19 -13
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +22 -3
  58. package/lib/commonjs/apps/viewer/app.d.ts +30 -24
  59. package/lib/commonjs/apps/viewer/app.js +6 -6
  60. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  61. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  62. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +112 -112
  63. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  64. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  65. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  66. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +1 -0
  67. package/lib/commonjs/cli/mvs/mvs-print-schema.js +1 -0
  68. package/lib/commonjs/cli/mvs/mvs-render.d.ts +1 -0
  69. package/lib/commonjs/cli/mvs/mvs-render.js +1 -0
  70. package/lib/commonjs/cli/mvs/mvs-validate.d.ts +1 -0
  71. package/lib/commonjs/cli/mvs/mvs-validate.js +1 -0
  72. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  73. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  74. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
  75. package/lib/commonjs/extensions/anvil/behavior.d.ts +10 -9
  76. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -0
  77. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +2 -1
  78. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  79. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  80. package/lib/commonjs/extensions/backgrounds/index.d.ts +2 -2
  81. package/lib/commonjs/extensions/backgrounds/index.js +2 -1
  82. package/lib/commonjs/extensions/dnatco/behavior.d.ts +1 -1
  83. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +10 -10
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  86. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +10 -10
  87. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  88. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/g3d/format.d.ts +6 -6
  90. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
  91. package/lib/commonjs/extensions/geo-export/glb-exporter.js +6 -4
  92. package/lib/commonjs/extensions/geo-export/index.d.ts +1 -1
  93. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  94. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +2 -3
  95. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +1 -1
  96. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +2 -2
  97. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +9 -9
  98. package/lib/commonjs/extensions/model-export/index.d.ts +1 -1
  99. package/lib/commonjs/extensions/mp4-export/index.d.ts +1 -1
  100. package/lib/commonjs/extensions/mvs/behavior.d.ts +1 -1
  101. package/lib/commonjs/extensions/mvs/camera.d.ts +2 -0
  102. package/lib/commonjs/extensions/mvs/camera.js +29 -2
  103. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +4 -0
  104. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +1 -0
  105. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +4 -2
  106. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -0
  107. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -4
  108. package/lib/commonjs/extensions/mvs/components/formats.js +2 -1
  109. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  110. package/lib/commonjs/extensions/mvs/load.d.ts +2 -0
  111. package/lib/commonjs/extensions/mvs/load.js +12 -6
  112. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +2 -8
  113. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.d.ts +1 -1
  114. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +22 -22
  115. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  116. package/lib/commonjs/extensions/sb-ncbr/partial-charges/behavior.d.ts +1 -1
  117. package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +4 -4
  118. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +1 -1
  119. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +5 -5
  120. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +1 -1
  121. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +2 -2
  122. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +2 -2
  123. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +1 -1
  124. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +1 -1
  125. package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +1 -1
  126. package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +4 -4
  127. package/lib/commonjs/extensions/zenodo/index.d.ts +1 -1
  128. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -2
  129. package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -2
  130. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  131. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  132. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  133. package/lib/commonjs/mol-canvas3d/passes/background.d.ts +6 -1
  134. package/lib/commonjs/mol-canvas3d/passes/background.js +13 -1
  135. package/lib/commonjs/mol-canvas3d/passes/bloom.d.ts +37 -0
  136. package/lib/commonjs/mol-canvas3d/passes/bloom.js +272 -0
  137. package/lib/commonjs/mol-canvas3d/passes/dpoit.js +4 -2
  138. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +11 -7
  139. package/lib/commonjs/mol-canvas3d/passes/draw.js +29 -3
  140. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +6 -0
  141. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +31 -5
  142. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +35 -40
  143. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -1
  144. package/lib/commonjs/mol-geo/geometry/base.js +4 -1
  145. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  146. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -1
  147. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -1
  148. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -1
  149. package/lib/commonjs/mol-geo/geometry/emissive-data.d.ts +26 -0
  150. package/lib/commonjs/mol-geo/geometry/emissive-data.js +80 -0
  151. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -1
  152. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  153. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +3 -2
  154. package/lib/commonjs/mol-geo/geometry/lines/lines.js +4 -1
  155. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +2 -1
  156. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +36 -2
  157. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  158. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +11 -4
  159. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -2
  160. package/lib/commonjs/mol-geo/geometry/points/points.js +4 -1
  161. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -2
  162. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +7 -3
  163. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +2 -1
  164. package/lib/commonjs/mol-geo/geometry/text/text.js +4 -1
  165. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +2 -1
  166. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +34 -2
  167. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  168. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +14 -4
  169. package/lib/commonjs/mol-geo/util/location-iterator.d.ts +5 -2
  170. package/lib/commonjs/mol-geo/util/location-iterator.js +8 -3
  171. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -0
  172. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -0
  173. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -0
  174. package/lib/commonjs/mol-gl/renderable/lines.d.ts +10 -0
  175. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -0
  176. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -0
  177. package/lib/commonjs/mol-gl/renderable/schema.d.ts +24 -1
  178. package/lib/commonjs/mol-gl/renderable/schema.js +15 -2
  179. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -0
  180. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -0
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -0
  182. package/lib/commonjs/mol-gl/renderable.d.ts +1 -1
  183. package/lib/commonjs/mol-gl/renderable.js +2 -2
  184. package/lib/commonjs/mol-gl/renderer.d.ts +2 -1
  185. package/lib/commonjs/mol-gl/renderer.js +58 -49
  186. package/lib/commonjs/mol-gl/scene.d.ts +3 -1
  187. package/lib/commonjs/mol-gl/scene.js +26 -1
  188. package/lib/commonjs/mol-gl/shader/background.frag.d.ts +1 -1
  189. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -94
  190. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  191. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  192. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.d.ts +1 -0
  193. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +32 -0
  194. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.d.ts +1 -0
  195. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +37 -0
  196. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.d.ts +1 -0
  197. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +56 -0
  198. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  199. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  200. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  201. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
  202. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +78 -70
  203. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  204. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  205. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  206. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -112
  207. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  208. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  209. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  210. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -123
  211. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  212. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  213. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  214. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.d.ts +1 -0
  215. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +20 -0
  216. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  217. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  218. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  219. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -51
  220. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  221. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -92
  222. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  223. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  224. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -149
  225. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  226. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  227. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  228. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  229. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  230. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  231. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  232. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  233. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  234. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  235. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  236. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  237. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  238. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  239. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  240. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  241. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  242. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  243. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  244. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  245. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
  246. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +267 -264
  247. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  248. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  249. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -356
  251. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  252. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  253. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  254. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  255. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  256. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  257. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  258. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  259. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  260. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  261. package/lib/commonjs/mol-gl/shader/image.frag.js +170 -161
  262. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  263. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  264. package/lib/commonjs/mol-gl/shader/lines.frag.js +43 -40
  265. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
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  821. package/lib/mol-repr/shape/loci/common.d.ts +1 -0
  822. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  823. package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
  824. package/lib/mol-repr/shape/loci/label.d.ts +1 -0
  825. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  826. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  827. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  828. package/lib/mol-repr/structure/complex-representation.d.ts +1 -1
  829. package/lib/mol-repr/structure/complex-representation.js +7 -1
  830. package/lib/mol-repr/structure/complex-visual.d.ts +8 -1
  831. package/lib/mol-repr/structure/complex-visual.js +5 -1
  832. package/lib/mol-repr/structure/params.d.ts +8 -0
  833. package/lib/mol-repr/structure/registry.d.ts +14 -0
  834. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  835. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  836. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  837. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  838. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  839. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  840. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  841. package/lib/mol-repr/structure/representation/label.d.ts +3 -0
  842. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  843. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  844. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  845. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  846. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  847. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  848. package/lib/mol-repr/structure/units-representation.d.ts +1 -1
  849. package/lib/mol-repr/structure/units-representation.js +9 -3
  850. package/lib/mol-repr/structure/units-visual.d.ts +9 -1
  851. package/lib/mol-repr/structure/units-visual.js +5 -1
  852. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  853. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  854. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  855. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  856. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  857. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  858. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  859. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  860. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  861. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  862. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  863. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  864. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  865. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +1 -1
  866. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  867. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -0
  868. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  869. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  870. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  871. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  872. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  873. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  874. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  875. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  876. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  877. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  878. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  879. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  880. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  881. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  882. package/lib/mol-repr/visual.d.ts +6 -1
  883. package/lib/mol-repr/visual.js +57 -3
  884. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  885. package/lib/mol-repr/volume/isosurface.d.ts +6 -0
  886. package/lib/mol-repr/volume/registry.d.ts +4 -0
  887. package/lib/mol-repr/volume/representation.d.ts +2 -1
  888. package/lib/mol-repr/volume/representation.js +9 -2
  889. package/lib/mol-repr/volume/segment.d.ts +5 -0
  890. package/lib/mol-repr/volume/slice.d.ts +3 -0
  891. package/lib/mol-script/language/symbol-table/core.d.ts +3 -3
  892. package/lib/mol-state/tree/immutable.d.ts +1 -1
  893. package/lib/mol-state/tree/transient.d.ts +2 -2
  894. package/lib/mol-theme/color/external-volume.d.ts +3 -1
  895. package/lib/mol-theme/color/external-volume.js +8 -2
  896. package/lib/mol-theme/color.d.ts +1 -0
  897. package/lib/mol-theme/emissive.d.ts +40 -0
  898. package/lib/mol-theme/emissive.js +134 -0
  899. package/lib/mol-theme/substance.d.ts +1 -1
  900. package/lib/mol-theme/substance.js +2 -2
  901. package/lib/mol-theme/transparency.d.ts +0 -1
  902. package/lib/mol-util/input/input-observer.js +2 -0
  903. package/lib/mol-util/set.d.ts +1 -1
  904. package/lib/mol-util/set.js +17 -1
  905. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  906. package/lib/servers/volume/config.js +5 -5
  907. package/package.json +195 -193
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2019-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
@@ -14,14 +14,21 @@ import { DpoitPass } from './dpoit';
14
14
  import { AntialiasingPass, PostprocessingPass } from './postprocessing';
15
15
  import { MarkingPass } from './marking';
16
16
  import { createCopyRenderable } from '../../mol-gl/compute/util';
17
- import { isTimingMode } from '../../mol-util/debug';
17
+ import { isDebugMode, isTimingMode } from '../../mol-util/debug';
18
+ import { BloomPass } from './bloom';
18
19
  export class DrawPass {
19
20
  setTransparency(transparency) {
20
21
  if (transparency === 'wboit') {
21
22
  this.transparencyMode = this.wboit.supported ? 'wboit' : 'blended';
23
+ if (isDebugMode && !this.wboit.supported) {
24
+ console.log('Missing "wboit" support, falling back to "blended".');
25
+ }
22
26
  }
23
27
  else if (transparency === 'dpoit') {
24
28
  this.transparencyMode = this.dpoit.supported ? 'dpoit' : 'blended';
29
+ if (isDebugMode && !this.dpoit.supported) {
30
+ console.log('Missing "dpoit" support, falling back to "blended".');
31
+ }
25
32
  }
26
33
  else {
27
34
  this.transparencyMode = 'blended';
@@ -49,7 +56,8 @@ export class DrawPass {
49
56
  this.dpoit = new DpoitPass(webgl, width, height);
50
57
  this.marking = new MarkingPass(webgl, width, height);
51
58
  this.postprocessing = new PostprocessingPass(webgl, assetManager, this);
52
- this.antialiasing = new AntialiasingPass(webgl, this);
59
+ this.antialiasing = new AntialiasingPass(webgl, width, height);
60
+ this.bloom = new BloomPass(webgl, width, height);
53
61
  this.copyFboTarget = createCopyRenderable(webgl, this.colorTarget.texture);
54
62
  this.copyFboPostprocessing = createCopyRenderable(webgl, this.postprocessing.target.texture);
55
63
  this.setTransparency(transparency);
@@ -82,6 +90,7 @@ export class DrawPass {
82
90
  this.marking.setSize(width, height);
83
91
  this.postprocessing.setSize(width, height);
84
92
  this.antialiasing.setSize(width, height);
93
+ this.bloom.setSize(width, height);
85
94
  }
86
95
  _renderDpoit(renderer, camera, scene, iterations, transparentBackground, postprocessingProps) {
87
96
  if (!this.dpoit.supported)
@@ -239,6 +248,7 @@ export class DrawPass {
239
248
  }
240
249
  }
241
250
  _render(renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props) {
251
+ var _a;
242
252
  const volumeRendering = scene.volumes.renderables.length > 0;
243
253
  const postprocessingEnabled = PostprocessingPass.isEnabled(props.postprocessing);
244
254
  const antialiasingEnabled = AntialiasingPass.isEnabled(props.postprocessing);
@@ -296,7 +306,10 @@ export class DrawPass {
296
306
  renderer.renderBlended(helper.camera.scene, helper.camera.camera);
297
307
  }
298
308
  if (antialiasingEnabled) {
299
- this.antialiasing.render(camera, toDrawingBuffer, props.postprocessing);
309
+ const input = PostprocessingPass.isEnabled(props.postprocessing)
310
+ ? this.postprocessing.target.texture
311
+ : this.colorTarget.texture;
312
+ this.antialiasing.render(camera, input, toDrawingBuffer, props.postprocessing);
300
313
  }
301
314
  else if (toDrawingBuffer) {
302
315
  this.drawTarget.bind();
@@ -308,6 +321,19 @@ export class DrawPass {
308
321
  this.copyFboTarget.render();
309
322
  }
310
323
  }
324
+ if (props.postprocessing.bloom.name === 'on') {
325
+ const emissiveBloom = props.postprocessing.bloom.params.mode === 'emissive';
326
+ if (emissiveBloom && scene.emissiveAverage > 0) {
327
+ this.bloom.emissiveTarget.bind();
328
+ renderer.clear(false, true);
329
+ renderer.update(camera, scene);
330
+ renderer.renderEmissive(scene.primitives, camera, null);
331
+ }
332
+ if (!emissiveBloom || scene.emissiveAverage > 0) {
333
+ this.bloom.update(this.colorTarget.texture, this.bloom.emissiveTarget.texture, ((_a = this.depthTargetOpaque) === null || _a === void 0 ? void 0 : _a.texture) || this.depthTextureOpaque, props.postprocessing.bloom.params);
334
+ this.bloom.render(camera.viewport, toDrawingBuffer ? undefined : this.getColorTarget(props.postprocessing));
335
+ }
336
+ }
311
337
  this.webgl.gl.flush();
312
338
  }
313
339
  render(ctx, props, toDrawingBuffer) {
@@ -58,6 +58,12 @@ export declare const ImageParams: {
58
58
  background: PD.Normalize<{
59
59
  variant: any;
60
60
  }>;
61
+ bloom: PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
62
+ strength: any;
63
+ radius: any;
64
+ threshold: any;
65
+ mode: any;
66
+ }>, "on">;
61
67
  }>>;
62
68
  marking: PD.Group<PD.Normalize<{
63
69
  enabled: boolean;
@@ -1,11 +1,14 @@
1
1
  /**
2
- * Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2019-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
6
6
  * @author Ludovic Autin <ludovic.autin@gmail.com>
7
7
  */
8
+ import { TextureSpec, Values, UniformSpec, DefineSpec } from '../../mol-gl/renderable/schema';
8
9
  import { WebGLContext } from '../../mol-gl/webgl/context';
10
+ import { Texture } from '../../mol-gl/webgl/texture';
11
+ import { ComputeRenderable } from '../../mol-gl/renderable';
9
12
  import { ParamDefinition as PD } from '../../mol-util/param-definition';
10
13
  import { RenderTarget } from '../../mol-gl/webgl/render-target';
11
14
  import { DrawPass } from './draw';
@@ -14,6 +17,23 @@ import { Color } from '../../mol-util/color';
14
17
  import { BackgroundPass } from './background';
15
18
  import { AssetManager } from '../../mol-util/assets';
16
19
  import { Light } from '../../mol-gl/renderer';
20
+ export declare const OutlinesSchema: {
21
+ tDepthOpaque: TextureSpec<"texture">;
22
+ tDepthTransparent: TextureSpec<"texture">;
23
+ uTexSize: UniformSpec<"v2">;
24
+ dOrthographic: DefineSpec<"number">;
25
+ uNear: UniformSpec<"f">;
26
+ uFar: UniformSpec<"f">;
27
+ uInvProjection: UniformSpec<"m4">;
28
+ uOutlineThreshold: UniformSpec<"f">;
29
+ dTransparentOutline: DefineSpec<"boolean">;
30
+ drawCount: import("../../mol-gl/renderable/schema").ValueSpec<"number">;
31
+ instanceCount: import("../../mol-gl/renderable/schema").ValueSpec<"number">;
32
+ aPosition: import("../../mol-gl/renderable/schema").AttributeSpec<"float32">;
33
+ uQuadScale: UniformSpec<"v2">;
34
+ };
35
+ export type OutlinesRenderable = ComputeRenderable<Values<typeof OutlinesSchema>>;
36
+ export declare function getOutlinesRenderable(ctx: WebGLContext, depthTextureOpaque: Texture, depthTextureTransparent: Texture, transparentOutline: boolean): OutlinesRenderable;
17
37
  export declare const PostprocessingParams: {
18
38
  occlusion: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
19
39
  samples: number;
@@ -72,6 +92,7 @@ export declare const PostprocessingParams: {
72
92
  lightness: any;
73
93
  faces: any;
74
94
  blur: any;
95
+ rotation: any;
75
96
  }>, "skybox"> | PD.NamedParams<PD.Normalize<{
76
97
  topColor: any;
77
98
  bottomColor: any;
@@ -79,6 +100,12 @@ export declare const PostprocessingParams: {
79
100
  coverage: any;
80
101
  }>, "horizontalGradient">;
81
102
  }>>;
103
+ bloom: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
104
+ strength: number;
105
+ radius: number;
106
+ threshold: number;
107
+ mode: "luminosity" | "emissive";
108
+ }>, "on">>;
82
109
  };
83
110
  export type PostprocessingProps = PD.Values<typeof PostprocessingParams>;
84
111
  export declare class PostprocessingPass {
@@ -115,7 +142,7 @@ export declare class PostprocessingPass {
115
142
  readonly background: BackgroundPass;
116
143
  constructor(webgl: WebGLContext, assetManager: AssetManager, drawPass: DrawPass);
117
144
  setSize(width: number, height: number): void;
118
- private updateState;
145
+ updateState(camera: ICamera, transparentBackground: boolean, backgroundColor: Color, props: PostprocessingProps, light: Light): void;
119
146
  private occlusionOffset;
120
147
  setOcclusionOffset(x: number, y: number): void;
121
148
  private transparentBackground;
@@ -123,18 +150,17 @@ export declare class PostprocessingPass {
123
150
  render(camera: ICamera, toDrawingBuffer: boolean, transparentBackground: boolean, backgroundColor: Color, props: PostprocessingProps, light: Light): void;
124
151
  }
125
152
  export declare class AntialiasingPass {
126
- private drawPass;
127
153
  static isEnabled(props: PostprocessingProps): boolean;
128
154
  readonly target: RenderTarget;
129
155
  private readonly internalTarget;
130
156
  private readonly fxaa;
131
157
  private readonly smaa;
132
158
  private readonly cas;
133
- constructor(webgl: WebGLContext, drawPass: DrawPass);
159
+ constructor(webgl: WebGLContext, width: number, height: number);
134
160
  setSize(width: number, height: number): void;
135
161
  private _renderFxaa;
136
162
  private _renderSmaa;
137
163
  private _renderAntialiasing;
138
164
  private _renderCas;
139
- render(camera: ICamera, toDrawingBuffer: boolean, props: PostprocessingProps): void;
165
+ render(camera: ICamera, input: Texture, toDrawingBuffer: boolean | RenderTarget, props: PostprocessingProps): void;
140
166
  }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2019-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
@@ -25,7 +25,8 @@ import { isTimingMode } from '../../mol-util/debug';
25
25
  import { BackgroundParams, BackgroundPass } from './background';
26
26
  import { shadows_frag } from '../../mol-gl/shader/shadows.frag';
27
27
  import { CasParams, CasPass } from './cas';
28
- const OutlinesSchema = {
28
+ import { BloomParams } from './bloom';
29
+ export const OutlinesSchema = {
29
30
  ...QuadSchema,
30
31
  tDepthOpaque: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'),
31
32
  tDepthTransparent: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'),
@@ -37,7 +38,7 @@ const OutlinesSchema = {
37
38
  uOutlineThreshold: UniformSpec('f'),
38
39
  dTransparentOutline: DefineSpec('boolean'),
39
40
  };
40
- function getOutlinesRenderable(ctx, depthTextureOpaque, depthTextureTransparent, transparentOutline) {
41
+ export function getOutlinesRenderable(ctx, depthTextureOpaque, depthTextureTransparent, transparentOutline) {
41
42
  const width = depthTextureOpaque.getWidth();
42
43
  const height = depthTextureOpaque.getHeight();
43
44
  const values = {
@@ -323,6 +324,10 @@ export const PostprocessingParams = {
323
324
  off: PD.Group({})
324
325
  }, { cycle: true, description: 'Contrast Adaptive Sharpening' }),
325
326
  background: PD.Group(BackgroundParams, { isFlat: true }),
327
+ bloom: PD.MappedStatic('on', {
328
+ on: PD.Group(BloomParams),
329
+ off: PD.Group({})
330
+ }, { cycle: true, description: 'Bloom' }),
326
331
  };
327
332
  function getLevels(props, levels) {
328
333
  const count = props.length;
@@ -378,22 +383,22 @@ export class PostprocessingPass {
378
383
  const qw = Math.max(1, Math.floor(sw * 0.25));
379
384
  const qh = Math.max(1, Math.floor(sh * 0.25));
380
385
  this.downsampledDepthTarget = drawPass.packedDepth
381
- ? webgl.createRenderTarget(sw, sh, false, 'uint8', 'linear', 'rgba')
382
- : webgl.createRenderTarget(sw, sh, false, 'float32', 'linear', webgl.isWebGL2 ? 'alpha' : 'rgba');
386
+ ? webgl.createRenderTarget(sw, sh, false, 'uint8', 'nearest', 'rgba')
387
+ : webgl.createRenderTarget(sw, sh, false, 'float32', 'nearest', webgl.isWebGL2 ? 'alpha' : 'rgba');
383
388
  this.downsampleDepthRenderable = createCopyRenderable(webgl, depthTextureOpaque);
384
389
  const depthTexture = this.ssaoScale === 1 ? depthTextureOpaque : this.downsampledDepthTarget.texture;
385
390
  this.depthHalfTarget = drawPass.packedDepth
386
- ? webgl.createRenderTarget(hw, hh, false, 'uint8', 'linear', 'rgba')
387
- : webgl.createRenderTarget(hw, hh, false, 'float32', 'linear', webgl.isWebGL2 ? 'alpha' : 'rgba');
391
+ ? webgl.createRenderTarget(hw, hh, false, 'uint8', 'nearest', 'rgba')
392
+ : webgl.createRenderTarget(hw, hh, false, 'float32', 'nearest', webgl.isWebGL2 ? 'alpha' : 'rgba');
388
393
  this.depthHalfRenderable = createCopyRenderable(webgl, depthTexture);
389
394
  this.depthQuarterTarget = drawPass.packedDepth
390
- ? webgl.createRenderTarget(qw, qh, false, 'uint8', 'linear', 'rgba')
391
- : webgl.createRenderTarget(qw, qh, false, 'float32', 'linear', webgl.isWebGL2 ? 'alpha' : 'rgba');
395
+ ? webgl.createRenderTarget(qw, qh, false, 'uint8', 'nearest', 'rgba')
396
+ : webgl.createRenderTarget(qw, qh, false, 'float32', 'nearest', webgl.isWebGL2 ? 'alpha' : 'rgba');
392
397
  this.depthQuarterRenderable = createCopyRenderable(webgl, this.depthHalfTarget.texture);
393
- this.ssaoDepthTexture = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'linear');
398
+ this.ssaoDepthTexture = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'nearest');
394
399
  this.ssaoDepthTexture.define(sw, sh);
395
400
  this.ssaoDepthTexture.attachFramebuffer(this.ssaoFramebuffer, 'color0');
396
- this.ssaoDepthBlurProxyTexture = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'linear');
401
+ this.ssaoDepthBlurProxyTexture = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'nearest');
397
402
  this.ssaoDepthBlurProxyTexture.define(sw, sh);
398
403
  this.ssaoDepthBlurProxyTexture.attachFramebuffer(this.ssaoBlurFirstPassFramebuffer, 'color0');
399
404
  this.ssaoDepthTexture.attachFramebuffer(this.ssaoBlurSecondPassFramebuffer, 'color0');
@@ -737,11 +742,7 @@ export class AntialiasingPass {
737
742
  static isEnabled(props) {
738
743
  return props.antialiasing.name !== 'off';
739
744
  }
740
- constructor(webgl, drawPass) {
741
- this.drawPass = drawPass;
742
- const { colorTarget } = drawPass;
743
- const width = colorTarget.getWidth();
744
- const height = colorTarget.getHeight();
745
+ constructor(webgl, width, height) {
745
746
  this.target = webgl.createRenderTarget(width, height, false);
746
747
  this.internalTarget = webgl.createRenderTarget(width, height, false);
747
748
  this.fxaa = new FxaaPass(webgl, this.target.texture);
@@ -760,60 +761,53 @@ export class AntialiasingPass {
760
761
  this.cas.setSize(width, height);
761
762
  }
762
763
  }
763
- _renderFxaa(camera, target, props) {
764
+ _renderFxaa(camera, input, target, props) {
764
765
  if (props.antialiasing.name !== 'fxaa')
765
766
  return;
766
- const input = PostprocessingPass.isEnabled(props)
767
- ? this.drawPass.postprocessing.target.texture
768
- : this.drawPass.colorTarget.texture;
769
767
  this.fxaa.update(input, props.antialiasing.params);
770
768
  this.fxaa.render(camera.viewport, target);
771
769
  }
772
- _renderSmaa(camera, target, props) {
770
+ _renderSmaa(camera, input, target, props) {
773
771
  if (props.antialiasing.name !== 'smaa')
774
772
  return;
775
- const input = PostprocessingPass.isEnabled(props)
776
- ? this.drawPass.postprocessing.target.texture
777
- : this.drawPass.colorTarget.texture;
778
773
  this.smaa.update(input, props.antialiasing.params);
779
774
  this.smaa.render(camera.viewport, target);
780
775
  }
781
- _renderAntialiasing(camera, target, props) {
776
+ _renderAntialiasing(camera, input, target, props) {
782
777
  if (props.antialiasing.name === 'fxaa') {
783
- this._renderFxaa(camera, target, props);
778
+ this._renderFxaa(camera, input, target, props);
784
779
  }
785
780
  else if (props.antialiasing.name === 'smaa') {
786
- this._renderSmaa(camera, target, props);
781
+ this._renderSmaa(camera, input, target, props);
787
782
  }
788
783
  }
789
- _renderCas(camera, target, props) {
784
+ _renderCas(camera, input, target, props) {
790
785
  if (props.sharpening.name !== 'on')
791
786
  return;
792
- const input = props.antialiasing.name !== 'off'
793
- ? this.internalTarget.texture
794
- : PostprocessingPass.isEnabled(props)
795
- ? this.drawPass.postprocessing.target.texture
796
- : this.drawPass.colorTarget.texture;
787
+ if (props.antialiasing.name !== 'off')
788
+ input = this.internalTarget.texture;
797
789
  this.cas.update(input, props.sharpening.params);
798
790
  this.cas.render(camera.viewport, target);
799
791
  }
800
- render(camera, toDrawingBuffer, props) {
792
+ render(camera, input, toDrawingBuffer, props) {
801
793
  if (props.antialiasing.name === 'off' && props.sharpening.name === 'off')
802
794
  return;
803
795
  if (props.antialiasing.name === 'smaa' && !this.smaa.supported) {
804
796
  console.error('SMAA not supported, missing "HTMLImageElement"');
805
797
  return;
806
798
  }
807
- const target = toDrawingBuffer ? undefined : this.target;
799
+ const target = toDrawingBuffer === true
800
+ ? undefined : toDrawingBuffer === false
801
+ ? this.target : toDrawingBuffer;
808
802
  if (props.sharpening.name === 'off') {
809
- this._renderAntialiasing(camera, target, props);
803
+ this._renderAntialiasing(camera, input, target, props);
810
804
  }
811
805
  else if (props.antialiasing.name === 'off') {
812
- this._renderCas(camera, target, props);
806
+ this._renderCas(camera, input, target, props);
813
807
  }
814
808
  else {
815
- this._renderAntialiasing(camera, this.internalTarget, props);
816
- this._renderCas(camera, target, props);
809
+ this._renderAntialiasing(camera, input, this.internalTarget, props);
810
+ this._renderCas(camera, input, target, props);
817
811
  }
818
812
  }
819
813
  }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -61,6 +61,7 @@ export declare namespace BaseGeometry {
61
61
  scale: any;
62
62
  }>[];
63
63
  }>>;
64
+ emissive: PD.Numeric;
64
65
  instanceGranularity: PD.BooleanParam;
65
66
  lod: PD.Vec3;
66
67
  cellSize: PD.Numeric;
@@ -87,6 +88,7 @@ export declare namespace BaseGeometry {
87
88
  uMetalness: ValueCell<number, never>;
88
89
  uRoughness: ValueCell<number, never>;
89
90
  uBumpiness: ValueCell<number, never>;
91
+ uEmissive: ValueCell<number, never>;
90
92
  dLightCount: ValueCell<number, never>;
91
93
  dColorMarker: ValueCell<boolean, never>;
92
94
  dClipObjectCount: ValueCell<number, never>;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -76,6 +76,7 @@ export var BaseGeometry;
76
76
  quality: PD.Select('auto', VisualQualityOptions, { isEssential: true, description: 'Visual/rendering quality of the representation.' }),
77
77
  material: Material.getParam(),
78
78
  clip: PD.Group(Clip.Params),
79
+ emissive: PD.Numeric(0, { min: 0, max: 1, step: 0.01 }),
79
80
  instanceGranularity: PD.Boolean(false, { description: 'Use instance granularity for marker, transparency, clipping, overpaint, substance data to save memory.' }),
80
81
  lod: PD.Vec3(Vec3(), undefined, { ...BaseGeometry.CullingLodCategory, description: 'Level of detail.', fieldLabels: { x: 'Min Distance', y: 'Max Distance', z: 'Overlap (Shader)' } }),
81
82
  cellSize: PD.Numeric(200, { min: 0, max: 5000, step: 100 }, { ...BaseGeometry.CullingLodCategory, description: 'Instance grid cell size.' }),
@@ -103,6 +104,7 @@ export var BaseGeometry;
103
104
  uMetalness: ValueCell.create(props.material.metalness),
104
105
  uRoughness: ValueCell.create(props.material.roughness),
105
106
  uBumpiness: ValueCell.create(props.material.bumpiness),
107
+ uEmissive: ValueCell.create(props.emissive),
106
108
  dLightCount: ValueCell.create(1),
107
109
  dColorMarker: ValueCell.create(true),
108
110
  dClipObjectCount: ValueCell.create(clip.objects.count),
@@ -122,6 +124,7 @@ export var BaseGeometry;
122
124
  ValueCell.updateIfChanged(values.uMetalness, props.material.metalness);
123
125
  ValueCell.updateIfChanged(values.uRoughness, props.material.roughness);
124
126
  ValueCell.updateIfChanged(values.uBumpiness, props.material.bumpiness);
127
+ ValueCell.updateIfChanged(values.uEmissive, props.emissive);
125
128
  const clip = Clip.getClip(props.clip);
126
129
  ValueCell.updateIfChanged(values.dClipObjectCount, clip.objects.count);
127
130
  ValueCell.updateIfChanged(values.dClipVariant, clip.variant);
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -73,6 +73,7 @@ export declare namespace Cylinders {
73
73
  scale: any;
74
74
  }>[];
75
75
  }>>;
76
+ emissive: PD.Numeric;
76
77
  instanceGranularity: PD.BooleanParam;
77
78
  lod: PD.Vec3;
78
79
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  * @author Gianluca Tomasello <giagitom@gmail.com>
@@ -20,6 +20,7 @@ import { createEmptyTransparency } from '../transparency-data';
20
20
  import { hashFnv32a } from '../../../mol-data/util';
21
21
  import { createEmptyClipping } from '../clipping-data';
22
22
  import { createEmptySubstance } from '../substance-data';
23
+ import { createEmptyEmissive } from '../emissive-data';
23
24
  export var Cylinders;
24
25
  (function (Cylinders) {
25
26
  function create(mappings, indices, groups, starts, ends, scales, caps, colorModes, cylinderCount, cylinders) {
@@ -164,6 +165,7 @@ export var Cylinders;
164
165
  : createMarkers(instanceCount * groupCount, 'groupInstance');
165
166
  const overpaint = createEmptyOverpaint();
166
167
  const transparency = createEmptyTransparency();
168
+ const emissive = createEmptyEmissive();
167
169
  const material = createEmptySubstance();
168
170
  const clipping = createEmptyClipping();
169
171
  const counts = { drawCount: cylinders.cylinderCount * 4 * 3, vertexCount: cylinders.cylinderCount * 6, groupCount, instanceCount };
@@ -188,6 +190,7 @@ export var Cylinders;
188
190
  ...marker,
189
191
  ...overpaint,
190
192
  ...transparency,
193
+ ...emissive,
191
194
  ...material,
192
195
  ...clipping,
193
196
  ...transform,
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -55,6 +55,7 @@ export declare namespace DirectVolume {
55
55
  scale: any;
56
56
  }>[];
57
57
  }>>;
58
+ emissive: PD.Numeric;
58
59
  instanceGranularity: PD.BooleanParam;
59
60
  lod: PD.Vec3;
60
61
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -21,6 +21,7 @@ import { createTransferFunctionTexture, getControlPointsFromVec2Array } from './
21
21
  import { createEmptyClipping } from '../clipping-data';
22
22
  import { Grid } from '../../../mol-model/volume';
23
23
  import { createEmptySubstance } from '../substance-data';
24
+ import { createEmptyEmissive } from '../emissive-data';
24
25
  const VolumeBox = Box();
25
26
  export var DirectVolume;
26
27
  (function (DirectVolume) {
@@ -169,6 +170,7 @@ export var DirectVolume;
169
170
  : createMarkers(instanceCount * groupCount, 'groupInstance');
170
171
  const overpaint = createEmptyOverpaint();
171
172
  const transparency = createEmptyTransparency();
173
+ const emissive = createEmptyEmissive();
172
174
  const material = createEmptySubstance();
173
175
  const clipping = createEmptyClipping();
174
176
  const [x, y, z] = gridDimension.ref.value;
@@ -183,6 +185,7 @@ export var DirectVolume;
183
185
  ...marker,
184
186
  ...overpaint,
185
187
  ...transparency,
188
+ ...emissive,
186
189
  ...material,
187
190
  ...clipping,
188
191
  ...transform,
@@ -0,0 +1,26 @@
1
+ /**
2
+ * Copyright (c) 2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ */
6
+ import { ValueCell } from '../../mol-util/value-cell';
7
+ import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
8
+ import { TextureImage } from '../../mol-gl/renderable/util';
9
+ import { Texture } from '../../mol-gl/webgl/texture';
10
+ export type EmissiveType = 'instance' | 'groupInstance' | 'volumeInstance';
11
+ export type EmissiveData = {
12
+ tEmissive: ValueCell<TextureImage<Uint8Array>>;
13
+ uEmissiveTexDim: ValueCell<Vec2>;
14
+ dEmissive: ValueCell<boolean>;
15
+ emissiveAverage: ValueCell<number>;
16
+ tEmissiveGrid: ValueCell<Texture>;
17
+ uEmissiveGridDim: ValueCell<Vec3>;
18
+ uEmissiveGridTransform: ValueCell<Vec4>;
19
+ dEmissiveType: ValueCell<string>;
20
+ uEmissiveStrength: ValueCell<number>;
21
+ };
22
+ export declare function applyEmissiveValue(array: Uint8Array, start: number, end: number, value: number): boolean;
23
+ export declare function getEmissiveAverage(array: Uint8Array, count: number): number;
24
+ export declare function clearEmissive(array: Uint8Array, start: number, end: number): void;
25
+ export declare function createEmissive(count: number, type: EmissiveType, emissiveData?: EmissiveData): EmissiveData;
26
+ export declare function createEmptyEmissive(emissiveData?: EmissiveData): EmissiveData;
@@ -0,0 +1,72 @@
1
+ /**
2
+ * Copyright (c) 2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ *
4
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
+ */
6
+ import { ValueCell } from '../../mol-util/value-cell';
7
+ import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
8
+ import { createTextureImage } from '../../mol-gl/renderable/util';
9
+ import { createNullTexture } from '../../mol-gl/webgl/texture';
10
+ export function applyEmissiveValue(array, start, end, value) {
11
+ for (let i = start; i < end; ++i) {
12
+ array[i] = value * 255;
13
+ }
14
+ return true;
15
+ }
16
+ export function getEmissiveAverage(array, count) {
17
+ if (count === 0 || array.length < count)
18
+ return 0;
19
+ let sum = 0;
20
+ for (let i = 0; i < count; ++i) {
21
+ sum += array[i];
22
+ }
23
+ return sum / (255 * count);
24
+ }
25
+ export function clearEmissive(array, start, end) {
26
+ array.fill(0, start, end);
27
+ }
28
+ export function createEmissive(count, type, emissiveData) {
29
+ const emissive = createTextureImage(Math.max(1, count), 1, Uint8Array, emissiveData && emissiveData.tEmissive.ref.value.array);
30
+ if (emissiveData) {
31
+ ValueCell.update(emissiveData.tEmissive, emissive);
32
+ ValueCell.update(emissiveData.uEmissiveTexDim, Vec2.create(emissive.width, emissive.height));
33
+ ValueCell.updateIfChanged(emissiveData.dEmissive, count > 0);
34
+ ValueCell.updateIfChanged(emissiveData.emissiveAverage, getEmissiveAverage(emissive.array, count));
35
+ ValueCell.updateIfChanged(emissiveData.dEmissiveType, type);
36
+ return emissiveData;
37
+ }
38
+ else {
39
+ return {
40
+ tEmissive: ValueCell.create(emissive),
41
+ uEmissiveTexDim: ValueCell.create(Vec2.create(emissive.width, emissive.height)),
42
+ dEmissive: ValueCell.create(count > 0),
43
+ emissiveAverage: ValueCell.create(0),
44
+ tEmissiveGrid: ValueCell.create(createNullTexture()),
45
+ uEmissiveGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
46
+ uEmissiveGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
47
+ dEmissiveType: ValueCell.create(type),
48
+ uEmissiveStrength: ValueCell.create(1),
49
+ };
50
+ }
51
+ }
52
+ const emptyEmissiveTexture = { array: new Uint8Array(1), width: 1, height: 1 };
53
+ export function createEmptyEmissive(emissiveData) {
54
+ if (emissiveData) {
55
+ ValueCell.update(emissiveData.tEmissive, emptyEmissiveTexture);
56
+ ValueCell.update(emissiveData.uEmissiveTexDim, Vec2.create(1, 1));
57
+ return emissiveData;
58
+ }
59
+ else {
60
+ return {
61
+ tEmissive: ValueCell.create(emptyEmissiveTexture),
62
+ uEmissiveTexDim: ValueCell.create(Vec2.create(1, 1)),
63
+ dEmissive: ValueCell.create(false),
64
+ emissiveAverage: ValueCell.create(0),
65
+ tEmissiveGrid: ValueCell.create(createNullTexture()),
66
+ uEmissiveGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
67
+ uEmissiveGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
68
+ dEmissiveType: ValueCell.create('groupInstance'),
69
+ uEmissiveStrength: ValueCell.create(1),
70
+ };
71
+ }
72
+ }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -49,6 +49,7 @@ declare namespace Image {
49
49
  scale: any;
50
50
  }>[];
51
51
  }>>;
52
+ emissive: PD.Numeric;
52
53
  instanceGranularity: PD.BooleanParam;
53
54
  lod: PD.Vec3;
54
55
  cellSize: PD.Numeric;
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -20,6 +20,7 @@ import { createEmptyClipping } from '../clipping-data';
20
20
  import { NullLocation } from '../../../mol-model/location';
21
21
  import { QuadPositions } from '../../../mol-gl/compute/util';
22
22
  import { createEmptySubstance } from '../substance-data';
23
+ import { createEmptyEmissive } from '../emissive-data';
23
24
  const QuadIndices = new Uint32Array([
24
25
  0, 1, 2,
25
26
  1, 3, 2
@@ -114,6 +115,7 @@ var Image;
114
115
  : createMarkers(instanceCount * groupCount, 'groupInstance');
115
116
  const overpaint = createEmptyOverpaint();
116
117
  const transparency = createEmptyTransparency();
118
+ const emissive = createEmptyEmissive();
117
119
  const material = createEmptySubstance();
118
120
  const clipping = createEmptyClipping();
119
121
  const counts = { drawCount: QuadIndices.length, vertexCount: QuadPositions.length / 3, groupCount, instanceCount };
@@ -125,6 +127,7 @@ var Image;
125
127
  ...marker,
126
128
  ...overpaint,
127
129
  ...transparency,
130
+ ...emissive,
128
131
  ...material,
129
132
  ...clipping,
130
133
  ...transform,