cosmos 3.5.1 → 3.5.2

data/lib/cosmos/tools/script_runner/script_runner_config.rb

@@ -1,40 +1,40 @@
-# encoding: ascii-8bit
-
-# Copyright 2014 Ball Aerospace & Technologies Corp.
-# All Rights Reserved.
-#
-# This program is free software; you can modify and/or redistribute it
-# under the terms of the GNU General Public License
-# as published by the Free Software Foundation; version 3 with
-# attribution addendums as found in the LICENSE.txt
-
-require 'cosmos'
-
-module Cosmos
-
-  # This class reads the Script Runner configuration file
-  class ScriptRunnerConfig
-    # Processes the config file
-    def initialize(filename)
-      parser = ConfigParser.new
-      parser.parse_file(filename) do |keyword, params|
-        case keyword
-        when 'LINE_DELAY'
-          parser.verify_num_parameters(1, 1, "#{keyword} <Delay in Seconds>")
-          ScriptRunnerFrame.line_delay = params[0].to_f
-        when 'MONITOR_LIMITS'
-          parser.verify_num_parameters(0, 0, keyword)
-          ScriptRunnerFrame.monitor_limits = true
-        when 'PAUSE_ON_RED'
-          parser.verify_num_parameters(0, 0, keyword)
-          ScriptRunnerFrame.monitor_limits = true
-          ScriptRunnerFrame.pause_on_red = true
-        else
-          # blank config.lines will have a nil keyword and should not raise an exception
-          raise parser.error("Unknown keyword '#{keyword}'") if keyword
-        end
-      end
-    end
-  end # class ScriptRunnerConfig
-
-end # module Cosmos
+# encoding: ascii-8bit
+
+# Copyright 2014 Ball Aerospace & Technologies Corp.
+# All Rights Reserved.
+#
+# This program is free software; you can modify and/or redistribute it
+# under the terms of the GNU General Public License
+# as published by the Free Software Foundation; version 3 with
+# attribution addendums as found in the LICENSE.txt
+
+require 'cosmos'
+
+module Cosmos
+
+  # This class reads the Script Runner configuration file
+  class ScriptRunnerConfig
+    # Processes the config file
+    def initialize(filename)
+      parser = ConfigParser.new
+      parser.parse_file(filename) do |keyword, params|
+        case keyword
+        when 'LINE_DELAY'
+          parser.verify_num_parameters(1, 1, "#{keyword} <Delay in Seconds>")
+          ScriptRunnerFrame.line_delay = params[0].to_f
+        when 'MONITOR_LIMITS'
+          parser.verify_num_parameters(0, 0, keyword)
+          ScriptRunnerFrame.monitor_limits = true
+        when 'PAUSE_ON_RED'
+          parser.verify_num_parameters(0, 0, keyword)
+          ScriptRunnerFrame.monitor_limits = true
+          ScriptRunnerFrame.pause_on_red = true
+        else
+          # blank config.lines will have a nil keyword and should not raise an exception
+          raise parser.error("Unknown keyword '#{keyword}'") if keyword
+        end
+      end
+    end
+  end # class ScriptRunnerConfig
+
+end # module Cosmos

data/lib/cosmos/tools/script_runner/script_runner_frame.rb

@@ -1,1798 +1,1798 @@
-# encoding: ascii-8bit
-
-# Copyright 2014 Ball Aerospace & Technologies Corp.
-# All Rights Reserved.
-#
-# This program is free software; you can modify and/or redistribute it
-# under the terms of the GNU General Public License
-# as published by the Free Software Foundation; version 3 with
-# attribution addendums as found in the LICENSE.txt
-
-require 'cosmos'
-require 'cosmos/script'
-require 'cosmos/gui/utilities/script_module_gui'
-require 'cosmos/gui/dialogs/splash'
-require 'cosmos/gui/dialogs/exception_dialog'
-require 'cosmos/gui/text/completion'
-require 'cosmos/gui/text/completion_line_edit'
-require 'cosmos/gui/text/ruby_editor'
-require 'cosmos/gui/dialogs/progress_dialog'
-require 'cosmos/gui/widgets/realtime_button_bar'
-require 'cosmos/gui/dialogs/find_replace_dialog'
-require 'cosmos/gui/choosers/file_chooser'
-require 'cosmos/io/stdout'
-require 'cosmos/io/stderr'
-
-module Cosmos
-
-  Cosmos.disable_warnings do
-    module Script
-      def prompt_for_script_abort
-        ScriptRunnerFrame.instance.perform_pause
-        return false # Not aborted - Retry
-      end
-    end
-  end
-
-  class ScriptRunnerDialog < Qt::Dialog
-    attr_reader :script_runner_frame
-
-    def initialize(parent,
-                   title,
-                   default_tab_text = 'Untitled')
-      super(parent)
-      setWindowTitle(title)
-      setMinimumWidth(parent.width * 0.8)
-      setMinimumHeight(parent.height * 0.6)
-
-      # Create script runner frame
-      @script_runner_frame = ScriptRunnerFrame.new(self, default_tab_text)
-      layout = Qt::VBoxLayout.new
-      layout.addWidget(@script_runner_frame)
-      setLayout(layout)
-    end
-
-    # Executes the given text and closes when complete
-    def execute_text_and_close_on_complete(text, text_binding = nil)
-      @script_runner_frame.set_text(text)
-      @script_runner_frame.run_and_close_on_complete(text_binding)
-      exec
-      dispose
-    end
-
-    def reject
-      # Don't allow the dialog to close if we're running
-      return if @script_runner_frame.running?
-      super
-    end
-  end # class ScriptRunnerDialog
-
-  class ScriptRunnerFrame < Qt::Widget
-    slots 'context_menu(const QPoint&)'
-    slots 'undo_available(bool)'
-    slots 'breakpoint_set(int)'
-    slots 'breakpoint_cleared(int)'
-    slots 'breakpoints_cleared()'
-    signals 'undoAvailable(bool)'
-    signals 'modificationChanged(bool)'
-
-    CMD_KEYWORDS     = %w(cmd cmd_no_range_check cmd_no_hazardous_check cmd_no_checks)
-    TLM_KEYWORDS     = %w(tlm tlm_raw tlm_formatted tlm_with_units limits_enabled? \
-                          enable_limits disable_limits wait_tolerance wait_tolerance_raw \
-                          check_tolerance check_tolerance_raw wait_check_tolerance \
-                          wait_check_tolerance_raw)
-    SET_TLM_KEYWORDS = %w(set_tlm set_tlm_raw)
-    CHECK_KEYWORDS   = %w(check check_raw wait wait_raw wait_check wait_check_raw)
-
-    attr_accessor :use_instrumentation
-    attr_accessor :change_callback
-    attr_accessor :run_callback
-    attr_accessor :stop_callback
-    attr_accessor :error_callback
-    attr_accessor :pause_callback
-    attr_reader :filename
-    attr_accessor :continue_after_error
-    attr_accessor :exceptions
-    attr_accessor :script_binding
-    attr_accessor :inline_return
-    attr_accessor :inline_return_params
-    attr_reader   :message_log
-    attr_reader   :script_class
-    attr_reader   :top_level_instrumented_cache
-    attr_accessor :stdout_max_lines
-    attr_reader   :script
-
-    @@instance = nil
-    @@run_thread = nil
-    @@breakpoints = {}
-    @@step_mode = false
-    @@line_delay = 0.1
-    @@instrumented_cache = {}
-    @@file_cache = {}
-    @@output_thread = nil
-    @@limits_monitor_thread = nil
-    @@pause_on_error = true
-    @@monitor_limits = false
-    @@pause_on_red = false
-    @@show_backtrace = false
-    @@error = nil
-    @@output_sleeper = Sleeper.new
-    @@limits_sleeper = Sleeper.new
-    @@cancel_output = false
-    @@cancel_limits = false
-
-    def initialize(parent, default_tab_text = 'Untitled')
-      super(parent)
-      @default_tab_text = '  ' + default_tab_text + '  '
-      # Keep track of whether this frame has been fully initialized
-      @initialized = false
-      @debug_frame = nil
-
-      @layout = Qt::VBoxLayout.new
-      @layout.setContentsMargins(0,0,0,0)
-
-      # Add Realtime Button Bar
-      @realtime_button_bar = RealtimeButtonBar.new(self)
-      @realtime_button_bar.state = 'Stopped'
-      @realtime_button_bar.start_callback = method(:handle_start_go_button)
-      @realtime_button_bar.pause_callback = method(:handle_pause_retry_button)
-      @realtime_button_bar.stop_callback  = method(:handle_stop_button)
-      @layout.addWidget(@realtime_button_bar)
-
-      # Create a splitter to hold the script text area and the script output text area.
-      @splitter = Qt::Splitter.new(Qt::Vertical, self)
-      @layout.addWidget(@splitter)
-      @top_widget = Qt::Widget.new(@splitter)
-      @top_widget.setContentsMargins(0,0,0,0)
-      @top_frame = Qt::VBoxLayout.new(@top_widget)
-      @top_frame.setContentsMargins(0,0,0,0)
-
-      # Add Initial Text Window
-      @script = create_ruby_editor()
-      @script.connect(SIGNAL('modificationChanged(bool)')) do |changed|
-        emit modificationChanged(changed)
-      end
-      @top_frame.addWidget(@script)
-
-      # Set self as the gui window to allow prompts and other popups to appear
-      set_cmd_tlm_gui_window(self)
-
-      # Add change handlers
-      connect(@script,
-              SIGNAL('undoAvailable(bool)'),
-              self,
-              SLOT('undo_available(bool)'))
-
-      # Add Output Text
-      @bottom_frame = Qt::Widget.new
-      @bottom_layout = Qt::VBoxLayout.new
-      @bottom_layout.setContentsMargins(0,0,0,0)
-      @bottom_layout_label = Qt::Label.new("Script Output:")
-      @bottom_layout.addWidget(@bottom_layout_label)
-      @output = Qt::PlainTextEdit.new
-      @output.setReadOnly(true)
-      @output.setMaximumBlockCount(100)
-      @bottom_layout.addWidget(@output)
-      @bottom_frame.setLayout(@bottom_layout)
-      @splitter.addWidget(@bottom_frame)
-      @splitter.setStretchFactor(0,10)
-      @splitter.setStretchFactor(1,1)
-
-      setLayout(@layout)
-
-      # Configure Variables
-      @line_offset = 0
-      @filename = ''
-      @output_io = StringIO.new('', 'r+')
-      @output_io_mutex = Mutex.new
-      @change_callback = nil
-      @run_callback = nil
-      @stop_callback = nil
-      @error_callback = nil
-      @pause_callback = nil
-      @key_press_callback = nil
-      @allow_start = true
-      @continue_after_error = true
-      @debug_text = nil
-      @debug_history = []
-      @debug_code_completion = nil
-      @top_level_instrumented_cache = nil
-      @output_time = Time.now
-      initialize_variables()
-
-      # Redirect $stdout and $stderr
-      redirect_io()
-
-      # Create Tabbook
-      @tab_book = Qt::TabWidget.new
-      @tab_book_shown = false
-
-      @find_dialog = nil
-      @replace_dialog = nil
-
-      mark_breakpoints('')
-    end
-
-    def current_tab_filename
-      if @tab_book_shown
-        filename = @tab_book.tabText(@tab_book.currentIndex)
-        if filename == @default_tab_text
-          return ''
-        else
-          return filename.strip
-        end
-      else
-        return @filename
-      end
-    end
-
-    def create_ruby_editor
-      # Add Initial Text Window
-      script = RubyEditor.new(self)
-      script.enable_breakpoints = true if @debug_frame
-      connect(script,
-              SIGNAL('breakpoint_set(int)'),
-              self,
-              SLOT('breakpoint_set(int)'))
-      connect(script,
-              SIGNAL('breakpoint_cleared(int)'),
-              self,
-              SLOT('breakpoint_cleared(int)'))
-      connect(script,
-              SIGNAL('breakpoints_cleared()'),
-              self,
-              SLOT('breakpoints_cleared()'))
-
-      # Add right click menu
-      script.setContextMenuPolicy(Qt::CustomContextMenu)
-      connect(script,
-              SIGNAL('customContextMenuRequested(const QPoint&)'),
-              self,
-              SLOT('context_menu(const QPoint&)'))
-
-      return script
-    end
-
-    def stop_message_log
-      @message_log.stop if @message_log
-      @message_log = nil
-    end
-
-    def filename=(filename)
-      # Stop the message log so a new one will be created with the new filename
-      stop_message_log()
-      @filename = filename
-      mark_breakpoints(filename)
-    end
-
-    def modified
-      @script.document.isModified()
-    end
-
-    def modified=(bool)
-      @script.document.setModified(bool)
-    end
-
-    def undo_available(bool)
-      emit undoAvailable(bool)
-    end
-
-    def key_press_callback=(callback)
-      @script.keyPressCallback = callback
-    end
-
-    def setFocus
-      @script.setFocus
-    end
-
-    def allow_start=(value)
-      @allow_start = value
-      if @allow_start
-        @realtime_button_bar.start_button.setEnabled(true)
-      elsif not running?
-        @realtime_button_bar.start_button.setEnabled(false)
-        @script.setReadOnly(true)
-      end
-    end
-
-    def clear
-      self.set_text('')
-      self.filename = ''
-      self.modified = false
-    end
-
-    def self.instance
-      @@instance
-    end
-
-    def self.instance=(value)
-      @@instance = value
-    end
-
-    def self.step_mode
-      @@step_mode
-    end
-
-    def self.step_mode=(value)
-      @@step_mode = value
-      if self.instance
-        if value
-          self.instance.pause
-        else
-          self.instance.go
-        end
-      end
-    end
-
-    def self.line_delay
-      @@line_delay
-    end
-
-    def self.line_delay=(value)
-      @@line_delay = value
-    end
-
-    def self.instrumented_cache
-      @@instrumented_cache
-    end
-
-    def self.instrumented_cache=(value)
-      @@instrumented_cache = value
-    end
-
-    def self.pause_on_error
-      @@pause_on_error
-    end
-
-    def self.pause_on_error=(value)
-      @@pause_on_error = value
-    end
-
-    def self.monitor_limits
-      @@monitor_limits
-    end
-
-    def self.monitor_limits=(value)
-      @@monitor_limits = value
-    end
-
-    def self.pause_on_red
-      @@pause_on_red
-    end
-
-    def self.pause_on_red=(value)
-      @@pause_on_red = value
-    end
-
-    def self.show_backtrace
-      @@show_backtrace
-    end
-
-    def self.show_backtrace=(value)
-      @@show_backtrace = value
-      if @@show_backtrace and @@error
-        puts Time.now.formatted + " (SCRIPTRUNNER): "  + "Most recent exception:\n" + @@error.formatted
-      end
-    end
-
-    def text
-      @script.toPlainText.gsub("\r", '')
-    end
-
-    def set_text(text, filename = '')
-      unless running?()
-        @script.setPlainText(text)
-        @script.stop_highlight
-        @filename = filename
-        mark_breakpoints(filename)
-      end
-    end
-
-    def set_text_from_file(filename)
-      unless running?()
-        @@file_cache[filename] = nil
-        load_file_into_script(filename)
-        @filename = filename
-      end
-    end
-
-    def self.running?
-      if @@run_thread then true else false end
-    end
-
-    def running?
-      if @@instance == self and ScriptRunnerFrame.running?() then true else false end
-    end
-
-    def go
-      @go    = true
-      @pause = false unless @@step_mode
-    end
-
-    def go?
-      temp = @go
-      @go = false
-      temp
-    end
-
-    def pause
-      @pause = true
-      @go    = false
-    end
-
-    def pause?
-      @pause
-    end
-
-    def self.stop!
-      if @@run_thread
-        Cosmos.kill_thread(nil, @@run_thread)
-        @@run_thread = nil
-      end
-    end
-
-    def stop?
-      @stop
-    end
-
-    def retry_needed?
-      @retry_needed
-    end
-
-    def retry_needed
-      @retry_needed = true
-    end
-
-    def disable_retry
-      @realtime_button_bar.start_button.setText('Skip')
-      @realtime_button_bar.pause_button.setDisabled(true)
-    end
-
-    def enable_retry
-      @realtime_button_bar.start_button.setText('Go')
-      @realtime_button_bar.pause_button.setDisabled(false)
-    end
-
-    def run
-      unless self.class.running?()
-        run_text(@script.toPlainText)
-      end
-    end
-
-    def run_and_close_on_complete(text_binding = nil)
-      run_text(@script.toPlainText, 0, text_binding, true)
-    end
-
-    def self.instrument_script(text, filename, mark_private = false)
-      if filename and !filename.empty?
-        @@file_cache[filename] = text.clone
-      end
-
-      ruby_lex_utils = RubyLexUtils.new
-      instrumented_text = ''
-
-      Qt.execute_in_main_thread(true) do
-        window = Qt::CoreApplication.instance.activeWindow
-        @cancel_instrumentation = false
-        ProgressDialog.execute(window, # parent
-                               "Instrumenting: #{File.basename(filename.to_s)}",
-                               500,    # width
-                               100,    # height
-                               true,   # show overall progress
-                               false,  # don't show step progress
-                               false,  # don't show text
-                               false,  # don't show done
-                               true) do |progress_dialog| # show cancel
-          progress_dialog.cancel_callback = lambda {|dialog| @cancel_instrumentation = true; [true, false]}
-          progress_dialog.enable_cancel_button
-          comments_removed_text = ruby_lex_utils.remove_comments(text)
-          num_lines = comments_removed_text.num_lines.to_f
-          num_lines = 1 if num_lines < 1
-          instrumented_text =
-            instrument_script_implementation(ruby_lex_utils,
-                                             comments_removed_text,
-                                             num_lines,
-                                             progress_dialog,
-                                             filename,
-                                             mark_private)
-          progress_dialog.close_done
-        end
-      end
-
-      Kernel.raise StopScript if @cancel_instrumentation or ProgressDialog.canceled?
-      instrumented_text
-    end
-
-    def self.instrument_script_implementation(ruby_lex_utils,
-                                              comments_removed_text,
-                                              num_lines,
-                                              progress_dialog,
-                                              filename,
-                                              mark_private = false)
-      if mark_private
-        instrumented_text = 'private; '
-      else
-        instrumented_text = ''
-      end
-
-      ruby_lex_utils.each_lexed_segment(comments_removed_text) do |segment, instrumentable, inside_begin, line_no|
-        return nil if @cancel_instrumentation
-        instrumented_line = ''
-        if instrumentable
-          # If not inside a begin block then create one to catch exceptions
-          unless inside_begin
-            instrumented_line << 'begin; '
-          end
-
-          # Add preline instrumentation
-          instrumented_line << "ScriptRunnerFrame.instance.script_binding = binding(); if ScriptRunnerFrame.instance.inline_return then ScriptRunnerFrame.instance.inline_return = nil; return ScriptRunnerFrame.instance.inline_return_params; end; ScriptRunnerFrame.instance.pre_line_instrumentation('#{filename}', #{line_no}); "
-
-          # Add the actual line
-          instrumented_line << segment
-          instrumented_line.chomp!
-
-          # Add postline instrumentation
-          instrumented_line << "; ScriptRunnerFrame.instance.post_line_instrumentation('#{filename}', #{line_no})"
-
-          # Complete begin block to catch exceptions
-          unless inside_begin
-            instrumented_line << "; rescue Exception => eval_error; retry if ScriptRunnerFrame.instance.exception_instrumentation(eval_error, '#{filename}', #{line_no}); end"
-          end
-
-          instrumented_line << "\n"
-        else
-          unless segment =~ /^\s*end\s*$/ or segment =~ /^\s*when .*$/
-            num_left_brackets = segment.count('{')
-            num_right_brackets = segment.count('}')
-            num_left_square_brackets = segment.count('[')
-            num_right_square_brackets = segment.count(']')
-
-            if (num_right_brackets > num_left_brackets) ||
-              (num_right_square_brackets > num_left_square_brackets)
-              instrumented_line = segment
-            else
-              instrumented_line = "ScriptRunnerFrame.instance.pre_line_instrumentation('#{filename}', #{line_no}); " + segment
-            end
-          else
-            instrumented_line = segment
-          end
-        end
-
-        instrumented_text << instrumented_line
-
-        progress_dialog.set_overall_progress(line_no / num_lines) if progress_dialog and line_no
-      end
-      instrumented_text
-    end
-
-    def pre_line_instrumentation(filename, line_number)
-      @current_filename = filename
-      @current_line_number = line_number
-      if @use_instrumentation
-        # Clear go
-        @go = false
-
-        # Handle stopping mid-script if necessary
-        Kernel.raise StopScript if @stop
-
-        # Handle needing to change tabs
-        handle_potential_tab_change(filename)
-
-        # Adjust line number for offset in main script
-        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
-        detail_string = nil
-        if filename
-          detail_string = File.basename(filename) << ':' << line_number.to_s
-        end
-        Logger.detail_string = detail_string
-
-        # Highlight the line that is about to run
-        Qt.execute_in_main_thread(true) {@active_script.highlight_line(line_number)}
-
-        # Handle pausing the script
-        handle_pause(filename, line_number)
-
-        # Handle delay between lines
-        handle_line_delay()
-      end
-    end
-
-    def post_line_instrumentation(filename, line_number)
-      if @use_instrumentation
-        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
-        handle_output_io(filename, line_number)
-      end
-    end
-
-    def exception_instrumentation(error, filename, line_number)
-      if error.class == StopScript || error.class == SkipTestCase || !@use_instrumentation
-        Kernel.raise error
-      else
-        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
-        handle_exception(error, false, filename, line_number)
-      end
-    end
-
-    def perform_pause
-      mark_paused()
-      wait_for_go_or_stop()
-    end
-
-    def perform_breakpoint(filename, line_number)
-      mark_breakpoint()
-      scriptrunner_puts "Hit Breakpoint at #{filename}:#{line_number}"
-      handle_output_io(filename, line_number)
-      wait_for_go_or_stop()
-    end
-
-    # Prompts the user that a script is running before they close the app
-    def prompt_if_running_on_close
-      safe_to_continue = true
-      if running?
-        case Qt::MessageBox.warning(
-          self,      # parent
-          'Warning', # title
-          'A Script is Running! Close Anyways?', # text
-          Qt::MessageBox::Yes | Qt::MessageBox::No, # buttons
-          Qt::MessageBox::No) # default button
-        when Qt::MessageBox::Yes
-          safe_to_continue = true
-          ScriptRunnerFrame.stop!
-        else
-          safe_to_continue = false
-        end
-      end
-      return safe_to_continue
-    end
-
-    ######################################
-    # Implement the breakpoint callbacks from the RubyEditor
-    ######################################
-    def breakpoint_set(line)
-      ScriptRunnerFrame.set_breakpoint(current_tab_filename(), line)
-    end
-
-    def breakpoint_cleared(line)
-      ScriptRunnerFrame.clear_breakpoint(current_tab_filename(), line)
-    end
-
-    def breakpoints_cleared
-      ScriptRunnerFrame.clear_breakpoints(current_tab_filename())
-    end
-
-    ######################################
-    # Implement edit functionality in the frame (cut, copy, paste, etc)
-    ######################################
-    def undo
-      @script.undo unless running?()
-    end
-
-    def redo
-      @script.redo unless running?()
-    end
-
-    def cut
-      @script.cut unless running?()
-    end
-
-    def copy
-      @script.copy unless running?()
-    end
-
-    def paste
-      @script.paste unless running?()
-    end
-
-    def select_all
-      @script.select_all unless running?()
-    end
-
-    def comment_or_uncomment_lines
-      @script.comment_or_uncomment_lines unless running?()
-    end
-
-    ##################################################################################
-    # Implement Script functionality in the frame (run selection, run from cursor, etc
-    ##################################################################################
-    def run_selection
-      unless self.class.running?()
-        selection = @script.selected_lines
-        if selection
-          start_line_number = @script.selection_start_line
-          end_line_number   = @script.selection_end_line
-          scriptrunner_puts "Running script lines #{start_line_number+1}-#{end_line_number+1}: #{File.basename(@filename)}"
-          handle_output_io()
-          run_text(selection, start_line_number)
-        end
-      end
-    end
-
-    def run_selection_while_paused
-      current_script = @tab_book.tab(@tab_book.currentIndex)
-      selection = current_script.selected_lines
-      if selection
-        start_line_number = current_script.selection_start_line
-        end_line_number   = current_script.selection_end_line
-        scriptrunner_puts "Debug: Running selected lines #{start_line_number+1}-#{end_line_number+1}: #{@tab_book.tabText(@tab_book.currentIndex)}"
-        handle_output_io()
-        dialog = ScriptRunnerDialog.new(self, 'Executing Selected Lines While Paused')
-        dialog.execute_text_and_close_on_complete(selection, @script_binding)
-        handle_output_io()
-      end
-    end
-
-    def run_from_cursor
-      unless self.class.running?()
-        line_number = @script.selection_start_line
-        text = @script.toPlainText.split("\n")[line_number..-1].join("\n")
-        scriptrunner_puts "Running script from line #{line_number}: #{File.basename(@filename)}"
-        handle_output_io()
-        run_text(text, line_number)
-      end
-    end
-
-    def ruby_syntax_check_selection
-      unless self.class.running?()
-        selection = @script.selected_lines
-        ruby_syntax_check_text(selection) if selection
-      end
-    end
-
-    def ruby_syntax_check_text(selection = nil)
-      unless self.class.running?()
-        selection = text() unless selection
-        check_process = IO.popen("ruby -c -rubygems 2>&1", 'r+')
-        check_process.write("require 'cosmos'; require 'cosmos/script'; " + selection)
-        check_process.close_write
-        results = check_process.gets
-        check_process.close
-        if results
-          if results =~ /Syntax OK/
-            Qt::MessageBox.information(self, 'Syntax Check Successful', results)
-          else
-            # Results is a string like this: ":2: syntax error ..."
-            # Normally the procedure comes before the first colon but since we
-            # are writing to the process this is blank so we throw it away
-            _, line_no, error = results.split(':')
-            Qt::MessageBox.warning(self,
-                                   'Syntax Check Failed',
-                                   "Error on line #{line_no}: #{error.strip}")
-          end
-        else
-          Qt::MessageBox.critical(self,
-                                  'Syntax Check Exception',
-                                  'Ruby syntax check unexpectedly returned nil')
-        end
-      end
-    end
-
-    def mnemonic_check_selection
-      unless self.class.running?()
-        selection = @script.selected_lines
-        mnemonic_check_text(selection, @script.selection_start_line+1) if selection
-      end
-    end
-
-    def mnemonic_check_text(text, start_line_number = 1)
-      results = []
-      line_number = start_line_number
-      text.each_line do |line|
-        if line =~ /\(/
-          result = nil
-          keyword = line.split('(')[0].split[-1]
-          if CMD_KEYWORDS.include? keyword
-            result = mnemonic_check_cmd_line(keyword, line_number, line)
-          elsif TLM_KEYWORDS.include? keyword
-            result = mnemonic_check_tlm_line(keyword, line_number, line)
-          elsif SET_TLM_KEYWORDS.include? keyword
-            result = mnemonic_check_set_tlm_line(keyword, line_number, line)
-          elsif CHECK_KEYWORDS.include? keyword
-            result = mnemonic_check_check_line(keyword, line_number, line)
-          end
-          results << result if result
-        end
-        line_number += 1
-      end
-
-      if results.empty?
-        Qt::MessageBox.information(self,
-                                   'Mnemonic Check Successful',
-                                   'Mnemonic Check Found No Errors')
-      else
-        dialog = Qt::Dialog.new(self) do |box|
-          box.setWindowTitle('Mnemonic Check Failed')
-          text = Qt::PlainTextEdit.new
-          text.setReadOnly(true)
-          text.setPlainText(results.join("\n"))
-          frame = Qt::VBoxLayout.new(box)
-          ok = Qt::PushButton.new('Ok')
-          ok.setDefault(true)
-          ok.connect(SIGNAL('clicked(bool)')) { box.accept }
-          frame.addWidget(text)
-          frame.addWidget(ok)
-        end
-        dialog.exec
-        dialog.dispose
-      end
-    end
-
-    ######################################################
-    # Implement the debug capability
-    ######################################################
-    def toggle_debug(debug = nil)
-      if debug.nil?
-        if @debug_frame
-          hide_debug()
-        else
-          show_debug()
-        end
-      else
-        if debug
-          if !@debug_frame
-            show_debug()
-          end
-        else
-          if @debug_frame
-            hide_debug()
-          end
-        end
-      end
-    end
-
-    def show_debug
-      unless @debug_frame
-        @script.enable_breakpoints = true
-        if @tab_book_shown
-          if @tab_book.count > 0
-            (0..(@tab_book.count - 1)).each do |index|
-              @tab_book.tab(index).enable_breakpoints = true
-            end
-          end
-        end
-
-        @debug_frame = Qt::HBoxLayout.new
-        @debug_frame.setContentsMargins(0,0,0,0)
-        @debug_frame_label = Qt::Label.new("Debug:")
-        @debug_frame.addWidget(@debug_frame_label)
-        @debug_text = CompletionLineEdit.new(self)
-        @debug_text.setFocus(Qt::OtherFocusReason)
-        @debug_text.keyPressCallback = lambda { |event|
-          case event.key
-          when Qt::Key_Return, Qt::Key_Enter
-            begin
-              debug_text = @debug_text.toPlainText
-              @debug_history.unshift(debug_text)
-              @debug_history_index = 0
-              @debug_text.setPlainText('')
-              scriptrunner_puts "Debug: #{debug_text}"
-              handle_output_io()
-              if not running?
-                # Capture STDOUT and STDERR
-                $stdout.add_stream(@output_io)
-                $stderr.add_stream(@output_io)
-              end
-
-              if @script_binding
-                eval(debug_text, @script_binding, 'debug', 1)
-              else
-                Object.class_eval(debug_text, 'debug', 1)
-              end
-              handle_output_io()
-            rescue Exception => error
-              if error.class == DRb::DRbConnError
-                Logger.error("Error Connecting to Command and Telemetry Server")
-              else
-                Logger.error(error.class.to_s.split('::')[-1] + ' : ' + error.message)
-              end
-              handle_output_io()
-            ensure
-              if not running?
-                # Capture STDOUT and STDERR
-                $stdout.remove_stream(@output_io)
-                $stderr.remove_stream(@output_io)
-              end
-            end
-          when Qt::Key_Up
-            if @debug_history.length > 0
-              @debug_text.setPlainText(@debug_history[@debug_history_index])
-              @debug_history_index += 1
-              if @debug_history_index == @debug_history.length
-                @debug_history_index = @debug_history.length-1
-              end
-            end
-          when Qt::Key_Down
-            if @debug_history.length > 0
-              @debug_text.setPlainText(@debug_history[@debug_history_index])
-              @debug_history_index -= 1
-              @debug_history_index = 0 if @debug_history_index < 0
-            end
-          when Qt::Key_Escape
-            @debug_text.setPlainText("")
-          end
-        }
-
-        @debug_frame.addWidget(@debug_text)
-
-        @toggle_button = Qt::PushButton.new('Toggle Run/Step')
-        @debug_frame.addWidget(@toggle_button)
-        @toggle_button.connect(SIGNAL('clicked(bool)')) do
-          if @@step_mode
-            scriptrunner_puts "Debug: run_mode"
-            handle_output_io()
-            self.class.step_mode = false
-          else
-            scriptrunner_puts "Debug: step_mode"
-            handle_output_io()
-            self.class.step_mode = true
-          end
-        end
-
-        @return_button = Qt::PushButton.new('Insert Return')
-        @debug_frame.addWidget(@return_button)
-        @return_button.connect(SIGNAL('clicked(bool)')) do
-          scriptrunner_puts "Debug: insert_return(); ScriptRunnerFrame.instance.go()"
-          handle_output_io()
-          insert_return()
-          go()
-        end
-
-        @bottom_frame.layout.addLayout(@debug_frame)
-      end
-    end
-
-    def hide_debug
-      # Since we're disabling debug, clear the breakpoints and disable them
-      ScriptRunnerFrame.clear_breakpoints()
-      @script.clear_breakpoints
-      @script.enable_breakpoints = false
-      if @tab_book_shown
-        if @tab_book.count > 0
-          (0..(@tab_book.count - 1)).each do |index|
-            @tab_book.tab(index).enable_breakpoints = false
-          end
-        end
-      end
-      # Remove the debug frame
-      @bottom_frame.layout.takeAt(@bottom_frame.layout.count - 1) if @debug_frame
-      @debug_frame.removeAll
-      @debug_frame.dispose
-      @debug_frame = nil
-    end
-
-    def self.set_breakpoint(filename, line_number)
-      filename = File.basename(filename)
-      @@breakpoints[filename] ||= {}
-      @@breakpoints[filename][line_number] = true
-    end
-
-    def self.clear_breakpoint(filename, line_number)
-      filename = File.basename(filename)
-      @@breakpoints[filename] ||= {}
-      @@breakpoints[filename].delete(line_number) if @@breakpoints[filename][line_number]
-    end
-
-    def self.clear_breakpoints(filename = nil)
-      filename = File.basename(filename) unless filename.nil?
-      if filename == nil or filename.empty?
-        @@breakpoints = {}
-      else
-        @@breakpoints[filename] = {}
-      end
-    end
-
-    def select_tab_and_destroy_tabs_after_index(index)
-      Qt.execute_in_main_thread(true) do
-        if @tab_book_shown
-          @tab_book.setCurrentIndex(index)
-          @active_script = @tab_book.tab(@tab_book.currentIndex)
-
-          first_to_remove = index + 1
-          last_to_remove  = @call_stack.length - 1
-
-          last_to_remove.downto(first_to_remove) do |tab_index|
-            tab = @tab_book.tab(tab_index)
-            @tab_book.removeTab(tab_index)
-            tab.dispose
-          end
-
-          @call_stack = @call_stack[0..index]
-          @current_file = @call_stack[index]
-        end
-      end
-    end
-
-    def toggle_disconnect(config_file)
-      if get_cmd_tlm_disconnect
-        set_cmd_tlm_disconnect(false)
-        self.parent.setPalette(Cosmos::DEFAULT_PALETTE)
-      else
-        dialog = Qt::Dialog.new(self, Qt::WindowTitleHint | Qt::WindowSystemMenuHint)
-        dialog.setWindowTitle(tr("Server Config File"))
-        dialog_layout = Qt::VBoxLayout.new
-
-        chooser = FileChooser.new(self, "Config File", config_file, 'Select',
-                                  File.join('config', 'tools', 'cmd_tlm_server', config_file))
-        chooser.callback = lambda do |filename|
-          chooser.filename = File.basename(filename)
-        end
-        dialog_layout.addWidget(chooser)
-
-        button_layout = Qt::HBoxLayout.new
-        ok = Qt::PushButton.new("Ok")
-        ok.setDefault(true)
-        ok.connect(SIGNAL('clicked()')) do
-          dialog.accept()
-        end
-        button_layout.addWidget(ok)
-        cancel = Qt::PushButton.new("Cancel")
-        cancel.connect(SIGNAL('clicked()')) do
-          dialog.reject()
-        end
-        button_layout.addWidget(cancel)
-        dialog_layout.addLayout(button_layout)
-
-        dialog.setLayout(dialog_layout)
-        if dialog.exec == Qt::Dialog::Accepted
-          config_file = chooser.filename
-          self.parent.setPalette(Cosmos::RED_PALETTE)
-          Splash.execute(self) do |splash|
-            ConfigParser.splash = splash
-            splash.message = "Initializing Command and Telemetry Server"
-            set_cmd_tlm_disconnect(true, config_file)
-            ConfigParser.splash = nil
-          end
-        end
-        dialog.dispose
-      end
-      config_file
-    end
-
-    def current_backtrace
-      trace = []
-      Qt.execute_in_main_thread(true) do
-        if @@run_thread
-          temp_trace = @@run_thread.backtrace
-          cosmos_lib = Regexp.new(File.join(Cosmos::PATH, 'lib'))
-          temp_trace.each do |line|
-            next if line =~ cosmos_lib
-            trace << line
-          end
-        end
-      end
-      trace
-    end
-
-    def scriptrunner_puts(string)
-      puts Time.now.formatted + " (SCRIPTRUNNER): "  + string
-    end
-
-    def handle_output_io(filename = @current_filename, line_number = @current_line_number)
-      @output_time = Time.now
-      Qt.execute_in_main_thread(true) do
-        if @output_io.string[-1..-1] == "\n"
-          time_formatted = Time.now.formatted
-          lines_to_write = ''
-          out_line_number = line_number.to_s
-          out_filename = File.basename(filename) if filename
-
-          # Build each line to write
-          string = @output_io.string.clone
-          @output_io.string = @output_io.string[string.length..-1]
-          line_count = 0
-          string.each_line do |out_line|
-            color = nil
-            if out_line[0..1] == '20' and out_line[10] == ' ' and out_line[23..24] == ' ('
-              line_to_write = out_line
-            else
-              if filename
-                line_to_write = time_formatted + " (#{out_filename}:#{out_line_number}): "  + out_line
-              else
-                line_to_write = time_formatted + " (SCRIPTRUNNER): "  + out_line
-                color = Cosmos::BLUE
-              end
-            end
-            @output.add_formatted_text(line_to_write, color)
-            lines_to_write << line_to_write
-
-            line_count += 1
-            if line_count > @stdout_max_lines
-              out_line = "ERROR: Too much written to stdout.  Truncating output to #{@stdout_max_lines} lines.\n"
-              if filename
-                line_to_write = time_formatted + " (#{out_filename}:#{out_line_number}): "  + out_line
-              else
-                line_to_write = time_formatted + " (SCRIPTRUNNER): "  + out_line
-              end
-              @output.addText(line_to_write, Cosmos::RED)
-              lines_to_write << line_to_write
-              break
-            end
-          end # string.each_line
-
-          # Actually add to the GUI
-          @output.flush
-
-          # Add to the message log
-          if @filename.empty?
-            @message_log ||= MessageLog.new("sr_untitled")
-          else
-            @message_log ||= MessageLog.new("sr_#{File.basename(@filename).split('.')[0]}")
-          end
-          @message_log.write(lines_to_write)
-        end
-      end
-    end
-
-    def graceful_kill
-      # Just to avoid warning
-    end
-
-    protected
-
-    def initialize_variables
-      @@file_cache = {}
-      @@error = nil
-      @go = false
-      if @@step_mode
-        @pause = true
-      else
-        @pause = false
-      end
-      @stop = false
-      @retry_needed = false
-      @use_instrumentation = true
-      @active_script = @script
-      @call_stack = []
-      @pre_line_time = Time.now
-      @current_file = @filename
-      @exceptions = nil
-      @script_binding = nil
-      @inline_eval = nil
-      @current_filename = nil
-      @current_line_number = 0
-      @stdout_max_lines = 1000
-
-      @script.stop_highlight
-      @call_stack.push(@current_file.dup)
-    end
-
-    def wait_for_go_or_stop(error = nil)
-      @go = false
-      sleep(0.01) until @go or @stop
-      @go = false
-      mark_running()
-      Kernel.raise StopScript if @stop
-      Kernel.raise error if error and !@continue_after_error
-    end
-
-    def wait_for_go_or_stop_or_retry(error = nil)
-      @go = false
-      sleep(0.01) until @go or @stop or @retry_needed
-      @go = false
-      mark_running()
-      Kernel.raise StopScript if @stop
-      Kernel.raise error if error and !@continue_after_error
-    end
-
-    def mark_running
-      Qt.execute_in_main_thread(true) do
-        @run_callback.call(self) if @run_callback
-        @active_script.rehighlight
-        @realtime_button_bar.state = 'Running'
-        @realtime_button_bar.start_button.setText('Go')
-        @realtime_button_bar.pause_button.setText('Pause')
-      end
-    end
-
-    def mark_paused
-      Qt.execute_in_main_thread(true) do
-        @pause_callback.call(self) if @pause_callback
-        @active_script.rehighlight('lightblue')
-        @realtime_button_bar.state = 'Paused'
-      end
-    end
-
-    def mark_error
-      Qt.execute_in_main_thread(true) do
-        @error_callback.call(self) if @error_callback
-        @active_script.rehighlight('pink')
-        @realtime_button_bar.state = 'Error'
-        @realtime_button_bar.pause_button.setText('Retry')
-      end
-    end
-
-    def mark_stopped
-      stop_message_log()
-      Qt.execute_in_main_thread(true) do
-        @realtime_button_bar.start_button.setText('Start')
-        @realtime_button_bar.pause_button.setText('Pause')
-        @realtime_button_bar.state = 'Stopped'
-        @stop_callback.call(self) if @stop_callback
-      end
-    end
-
-    def mark_breakpoint
-      Qt.execute_in_main_thread(true) do
-        @active_script.rehighlight('tan')
-        @realtime_button_bar.state = 'Breakpoint'
-      end
-    end
-
-    def run_text(text,
-                 line_offset = 0,
-                 text_binding = nil,
-                 close_on_complete = false)
-      @run_callback.call(self) if @run_callback
-      @realtime_button_bar.start_button.setEnabled(true)
-      initialize_variables()
-      create_tabs()
-      @line_offset = line_offset
-      @script.setReadOnly(true)
-      @realtime_button_bar.start_button.setText(' Go ')
-      @realtime_button_bar.state = 'Running'
-
-      saved_instance = @@instance
-      saved_run_thread = @@run_thread
-      @@instance   = self
-      @@run_thread = Thread.new do
-        uncaught_exception = false
-        begin
-          # Capture STDOUT and STDERR
-          $stdout.add_stream(@output_io)
-          $stderr.add_stream(@output_io)
-
-          scriptrunner_puts "Starting script: #{File.basename(@filename)}" unless close_on_complete
-          handle_output_io()
-
-          # Start Limits Monitoring
-          @@limits_monitor_thread = Thread.new { limits_monitor_thread() } if @@monitor_limits and !@@limits_monitor_thread
-
-          # Start Output Thread
-          @@output_thread = Thread.new { output_thread() } unless @@output_thread
-
-          # Check top level cache
-          if @top_level_instrumented_cache &&
-            (@top_level_instrumented_cache[1] == line_offset) &&
-            (@top_level_instrumented_cache[2] == @filename) &&
-            (@top_level_instrumented_cache[0] == text)
-            # Use the instrumented cache
-            instrumented_script = @top_level_instrumented_cache[3]
-          else
-            # Instrument the script
-            if text_binding
-              instrumented_script = self.class.instrument_script(text, @filename, false)
-            else
-              instrumented_script = self.class.instrument_script(text, @filename, true)
-            end
-            @top_level_instrumented_cache = [text, line_offset, @filename, instrumented_script]
-          end
-
-          # Execute the script with warnings disabled
-          Cosmos.disable_warnings do
-            @pre_line_time = Time.now
-            Cosmos.set_working_dir do
-              if text_binding
-                eval(instrumented_script, text_binding, @filename, 1)
-              else
-                Object.class_eval(instrumented_script, @filename, 1)
-              end
-            end
-          end
-
-          scriptrunner_puts "Script completed: #{File.basename(@filename)}" unless close_on_complete
-          handle_output_io()
-
-        rescue Exception => error
-          if error.class == StopScript or error.class == SkipTestCase
-            scriptrunner_puts "Script stopped: #{File.basename(@filename)}"
-            handle_output_io()
-          else
-            uncaught_exception = true
-            filename, line_number = error.source
-            handle_exception(error, true, filename, line_number)
-            scriptrunner_puts "Exception in Control Statement - Script stopped: #{File.basename(@filename)}"
-            handle_output_io()
-            Qt.execute_in_main_thread(true) {@script.rehighlight('red') }
-          end
-        ensure
-          # Change Go Button to Start Button and remove highlight
-          Qt.execute_in_main_thread(true) do
-            # Stop Capturing STDOUT and STDERR
-            # Check for remove_stream because if the tool is quitting the
-            # Cosmos::restore_io may have been called which sets $stdout and
-            # $stderr to the IO constant
-            $stdout.remove_stream(@output_io) if $stdout.respond_to? :remove_stream
-            $stderr.remove_stream(@output_io) if $stderr.respond_to? :remove_stream
-
-            # Clear run thread and instance to indicate we are no longer running
-            @@instance = saved_instance
-            @@run_thread = saved_run_thread
-            @active_script = @script
-            @script_binding = nil
-            @current_filename = nil
-            @current_line_number = 0
-            if @@limits_monitor_thread and not @@instance
-              @@cancel_limits = true
-              @@limits_sleeper.cancel
-              Qt::CoreApplication.processEvents()
-              Cosmos.kill_thread(self, @@limits_monitor_thread)
-              @@limits_monitor_thread = nil
-            end
-            if @@output_thread and not @@instance
-              @@cancel_output = true
-              @@output_sleeper.cancel
-              Qt::CoreApplication.processEvents()
-              Cosmos.kill_thread(self, @@output_thread)
-              @@output_thread = nil
-            end
-
-            @script.setReadOnly(false)
-            @script.stop_highlight unless uncaught_exception
-            select_tab_and_destroy_tabs_after_index(0)
-            remove_tabs()
-            unless @allow_start
-              @realtime_button_bar.start_button.setEnabled(false)
-              @script.setReadOnly(true)
-            end
-            mark_stopped()
-            if close_on_complete
-              self.parent.done(0)
-            end
-          end
-        end
-      end
-    end
-
-    def handle_potential_tab_change(filename)
-      # Make sure the correct file is shown in script runner
-      if @current_file != filename and @tab_book_shown
-        Qt.execute_in_main_thread(true) do
-          if @call_stack.include?(filename)
-            index = @call_stack.index(filename)
-            select_tab_and_destroy_tabs_after_index(index)
-          else # new file
-            # Create new tab
-            new_script = create_ruby_editor()
-            @tab_book.addTab(new_script, '  ' + File.basename(filename) + '  ')
-
-            @call_stack.push(filename.dup)
-
-            # Switch to new tab
-            @tab_book.setCurrentIndex(@tab_book.count - 1)
-            @active_script = new_script
-            load_file_into_script(filename)
-            new_script.setReadOnly(true)
-          end
-
-          @current_file = filename
-        end
-      end
-    end
-
-    def show_active_tab
-      @tab_book.setCurrentIndex(@call_stack.length - 1) if @tab_book_shown
-    end
-
-    def handle_pause(filename, line_number)
-      filename = File.basename(filename)
-      breakpoint = false
-      breakpoint = true if @@breakpoints[filename] and @@breakpoints[filename][line_number]
-      if @pause
-        @pause = false unless @@step_mode
-        if breakpoint
-          perform_breakpoint(filename, line_number)
-        else
-          perform_pause()
-        end
-      else
-        perform_breakpoint(filename, line_number) if breakpoint
-      end
-    end
-
-    def handle_line_delay
-      if @@line_delay > 0.0
-        sleep_time = @@line_delay - (Time.now - @pre_line_time)
-        sleep(sleep_time) if sleep_time > 0.0
-      end
-      @pre_line_time = Time.now
-    end
-
-    def continue_without_pausing_on_errors?
-      if !@@pause_on_error
-        if Qt::MessageBox.warning(self, "Warning", "If an error occurs, the script will not pause and will run to completion. Continue?", Qt::MessageBox::Yes | Qt::MessageBox::No, Qt::MessageBox::Yes) == Qt::MessageBox::No
-          return false
-        end
-      end
-      true
-    end
-
-    def handle_start_go_button
-      scriptrunner_puts "User pressed #{@realtime_button_bar.start_button.text.strip}"
-      handle_output_io()
-      @realtime_button_bar.start_button.clear_focus()
-
-      if running?()
-        show_active_tab()
-        go()
-      else
-        if @allow_start
-          run() if continue_without_pausing_on_errors?()
-        end
-      end
-    end
-
-    def handle_pause_retry_button
-      scriptrunner_puts "User pressed #{@realtime_button_bar.pause_button.text.strip}"
-      handle_output_io()
-      @realtime_button_bar.pause_button.clear_focus()
-      show_active_tab() if running?
-      if @realtime_button_bar.pause_button.text.to_s == 'Pause'
-        pause()
-      else
-        retry_needed()
-      end
-    end
-
-    def handle_stop_button
-      scriptrunner_puts "User pressed #{@realtime_button_bar.stop_button.text.strip}"
-      handle_output_io()
-      @realtime_button_bar.stop_button.clear_focus()
-
-      if @stop
-        # If we're already stopped and they click Stop again, kill the run
-        # thread. This will break any ruby sleeps or other code blocks.
-        ScriptRunnerFrame.stop!
-        handle_output_io()
-      else
-        @stop = true
-      end
-      if !running?()
-        # Stop highlight if there was a red syntax error
-        @script.stop_highlight
-      end
-    end
-
-    def handle_exception(error, fatal, filename = nil, line_number = 0)
-      @error_callback.call(self) if @error_callback
-
-      @exceptions ||= []
-      @exceptions << error
-      @@error = error
-
-      if error.class == DRb::DRbConnError
-        Logger.error("Error Connecting to Command and Telemetry Server")
-      elsif error.class == CheckError
-        Logger.error(error.message)
-      else
-        Logger.error(error.class.to_s.split('::')[-1] + ' : ' + error.message)
-      end
-      Logger.error(error.backtrace.join("\n")) if @@show_backtrace
-      handle_output_io(filename, line_number)
-
-      Kernel.raise error if !@@pause_on_error and !@continue_after_error and !fatal
-
-      if !fatal and @@pause_on_error
-        mark_error()
-        wait_for_go_or_stop_or_retry(error)
-      end
-
-      if @retry_needed
-        @retry_needed = false
-        true
-      else
-        false
-      end
-    end
-
-    # Right click context_menu for the script
-    def context_menu(point)
-      if @tab_book_shown
-        current_script = @tab_book.tab(@tab_book.currentIndex)
-      else
-        current_script = @script
-      end
-      menu = current_script.context_menu(point)
-      menu.addSeparator()
-      if not self.class.running?
-        exec_selected_action = Qt::Action.new(tr("Execute Selected Lines"), self)
-        exec_selected_action.statusTip = tr("Execute the selected lines as a standalone script")
-        exec_selected_action.connect(SIGNAL('triggered()')) { run_selection() }
-        menu.addAction(exec_selected_action)
-
-        exec_cursor_action = Qt::Action.new(tr("Execute From Cursor"), self)
-        exec_cursor_action.statusTip = tr("Execute the script starting at the line containing the cursor")
-        exec_cursor_action.connect(SIGNAL('triggered()')) { run_from_cursor() }
-        menu.addAction(exec_cursor_action)
-
-        menu.addSeparator()
-
-        if RUBY_VERSION.split('.')[0].to_i > 1
-          syntax_action = Qt::Action.new(tr("Ruby Syntax Check Selected Lines"), self)
-          syntax_action.statusTip = tr("Check the selected lines for valid Ruby syntax")
-          syntax_action.connect(SIGNAL('triggered()')) { ruby_syntax_check_selection() }
-          menu.addAction(syntax_action)
-        end
-
-        mnemonic_action = Qt::Action.new(tr("Mnemonic Check Selected Lines"), self)
-        mnemonic_action.statusTip = tr("Check the selected lines for valid targets, packets, mnemonics and parameters")
-        mnemonic_action.connect(SIGNAL('triggered()')) { mnemonic_check_selection() }
-        menu.addAction(mnemonic_action)
-
-      elsif running?() and @realtime_button_bar.state != 'Running'
-        exec_selected_action = Qt::Action.new(tr("Execute Selected Lines While Paused"), self)
-        exec_selected_action.statusTip = tr("Execute the selected lines as a standalone script")
-        exec_selected_action.connect(SIGNAL('triggered()')) { run_selection_while_paused() }
-        menu.addAction(exec_selected_action)
-      end
-      menu.exec(current_script.mapToGlobal(point))
-      menu.dispose
-    end
-
-    def load_file_into_script(filename)
-      cached = @@file_cache[filename]
-      if cached
-        @active_script.setPlainText(cached.gsub("\r", ''))
-      else
-        @active_script.setPlainText(File.read(filename).gsub("\r", ''))
-      end
-      mark_breakpoints(filename)
-
-      @active_script.stop_highlight
-    end
-
-    def mark_breakpoints(filename)
-      @active_script.clear_breakpoints
-      breakpoints = @@breakpoints[File.basename(filename)]
-      if breakpoints
-        breakpoints.each do |line_number, present|
-          @active_script.add_breakpoint(line_number) if present
-        end
-      end
-    end
-
-    def redirect_io
-      # Redirect Standard Output and Standard Error
-      $stdout = Stdout.instance
-      $stderr = Stderr.instance
-
-      # Disable outputting to default io file descriptors
-      $stdout.remove_default_io
-      $stderr.remove_default_io
-
-      Logger.level = Logger::INFO
-      Logger::INFO_SEVERITY_STRING.replace('')
-      Logger::WARN_SEVERITY_STRING.replace('<Y> WARN:')
-      Logger::ERROR_SEVERITY_STRING.replace('<R> ERROR:')
-    end
-
-    def create_tabs
-      tab_text = @default_tab_text
-      tab_text = '  ' + File.basename(@filename) + '  ' unless @filename.empty?
-      @tab_book.addTab(@script, tab_text)
-      @top_frame.insertWidget(0, @tab_book)
-      @tab_book_shown = true
-    end
-
-    def remove_tabs
-      @top_frame.takeAt(0) # Remove the @tab_book from the layout
-      @top_frame.addWidget(@script) # Add back the script
-      @script.show
-      @tab_book_shown = false
-    end
-
-    def isolate_string(keyword, line)
-      found_string = nil
-
-      # Find keyword
-      keyword_index = line.index(keyword)
-
-      # Remove keyword from line
-      line = line[(keyword_index + keyword.length)..-1]
-
-      # Find start parens
-      start_parens = line.index('(')
-      if start_parens
-        end_parens   = line[start_parens..-1].index(')')
-        found_string = line[(start_parens + 1)..(end_parens + start_parens - 1)].remove_quotes if end_parens
-        if keyword == 'wait' or keyword == 'wait_check'
-          quote_index = found_string.rindex('"')
-          quote_index = found_string.rindex("'") unless quote_index
-          if quote_index
-            found_string = found_string[0..quote_index].remove_quotes
-          else
-            found_string = nil
-          end
-        end
-      end
-      found_string
-    end
-
-    def mnemonic_check_cmd_line(keyword, line_number, line)
-      result = nil
-
-      # Isolate the string
-      string = isolate_string(keyword, line)
-      if string
-        begin
-          target_name, cmd_name, cmd_params = extract_fields_from_cmd_text(string)
-          result = "At line #{line_number}: Unknown command: #{target_name} #{cmd_name}"
-          packet = System.commands.packet(target_name, cmd_name)
-          Kernel.raise "Command not found" unless packet
-          cmd_params.each do |param_name, param_value|
-            result = "At line #{line_number}: Unknown command parameter: #{target_name} #{cmd_name} #{param_name}"
-            packet.get_item(param_name)
-          end
-          result = nil
-        rescue
-          if result
-            if string.index('=>')
-              # Assume alternative syntax
-              result = nil
-            end
-          else
-            result = "At line #{line_number}: Potentially malformed command: #{line}"
-          end
-        end
-      end
-
-      result
-    end
-
-    def _mnemonic_check_tlm_line(keyword, line_number, line)
-      result = nil
-
-      # Isolate the string
-      string = isolate_string(keyword, line)
-      if string
-        begin
-          target_name, packet_name, item_name = yield string
-          result = "At line #{line_number}: Unknown telemetry item: #{target_name} #{packet_name} #{item_name}"
-          System.telemetry.packet_and_item(target_name, packet_name, item_name)
-          result = nil
-        rescue
-          if result
-            if string.index(',')
-              # Assume alternative syntax
-              result = nil
-            end
-          else
-            result = "At line #{line_number}: Potentially malformed telemetry: #{line}"
-          end
-        end
-      end
-
-      result
-    end
-
-    def mnemonic_check_tlm_line(keyword, line_number, line)
-      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
-        extract_fields_from_tlm_text(string)
-      end
-    end
-
-    def mnemonic_check_set_tlm_line(keyword, line_number, line)
-      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
-        extract_fields_from_set_tlm_text(string)
-      end
-    end
-
-    def mnemonic_check_check_line(keyword, line_number, line)
-      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
-        extract_fields_from_check_text(string)
-      end
-    end
-
-    def output_thread
-      @@cancel_output = false
-      @@output_sleeper = Sleeper.new
-      begin
-        loop do
-          break if @@cancel_output
-          handle_output_io() if (Time.now - @output_time) > 5.0
-          break if @@cancel_output
-          break if @@output_sleeper.sleep(1.0)
-        end # loop
-      rescue => error
-        Qt.execute_in_main_thread(true) do
-          ExceptionDialog.new(self, error, "Output Thread")
-        end
-      end
-    end
-
-    def limits_monitor_thread
-      @@cancel_limits = false
-      @@limits_sleeper = Sleeper.new
-      queue_id = nil
-      begin
-        loop do
-          break if @@cancel_limits
-          begin
-            # Subscribe to limits notifications
-            queue_id = subscribe_limits_events(100000) unless queue_id
-
-            # Get the next limits event
-            break if @@cancel_limits
-            begin
-              type, data = get_limits_event(queue_id, true)
-            rescue ThreadError
-              break if @@cancel_limits
-              break if @@limits_sleeper.sleep(0.5)
-              next
-            end
-
-            break if @@cancel_limits
-
-            # Display limits state changes
-            if type == :LIMITS_CHANGE
-              target_name = data[0]
-              packet_name = data[1]
-              item_name = data[2]
-              old_limits_state = data[3]
-              new_limits_state = data[4]
-
-              if old_limits_state == nil # Changing from nil
-                if (new_limits_state != :GREEN) &&
-                  (new_limits_state != :GREEN_LOW) &&
-                  (new_limits_state != :GREEN_HIGH) &&
-                  (new_limits_state != :BLUE)
-                  msg = "#{target_name} #{packet_name} #{item_name} is #{new_limits_state.to_s}"
-                  case new_limits_state
-                  when :YELLOW, :YELLOW_LOW, :YELLOW_HIGH
-                    scriptrunner_puts "<Y>#{msg}"
-                  when :RED, :RED_LOW, :RED_HIGH
-                    scriptrunner_puts "<R>#{msg}"
-                  else
-                    # Print nothing
-                  end
-                  handle_output_io()
-                end
-              else # changing from a color
-                msg = "#{target_name} #{packet_name} #{item_name} is #{new_limits_state.to_s}"
-                case new_limits_state
-                when :BLUE
-                  scriptrunner_puts "<B>#{msg}"
-                when :GREEN, :GREEN_LOW, :GREEN_HIGH
-                  scriptrunner_puts "<G>#{msg}"
-                when :YELLOW, :YELLOW_LOW, :YELLOW_HIGH
-                  scriptrunner_puts "<Y>#{msg}"
-                when :RED, :RED_LOW, :RED_HIGH
-                  scriptrunner_puts "<R>#{msg}"
-                else
-                  # Print nothing
-                end
-                break if @@cancel_limits
-                handle_output_io()
-                break if @@cancel_limits
-              end
-
-              if @@pause_on_red && (new_limits_state == :RED ||
-                                    new_limits_state == :RED_LOW ||
-                                    new_limits_state == :RED_HIGH)
-                break if @@cancel_limits
-                pause()
-                break if @@cancel_limits
-              end
-            end
-
-          rescue DRb::DRbConnError
-            queue_id = nil
-            break if @@cancel_limits
-            break if @@limits_sleeper.sleep(1)
-          end
-
-        end # loop
-      rescue => error
-        Qt.execute_in_main_thread(true) do
-          ExceptionDialog.new(self, error, "Limits Monitor Thread")
-        end
-      end
-    ensure
-      begin
-        unsubscribe_limits_events(queue_id) if queue_id
-      rescue
-        # Oh Well
-      end
-    end
-
-  end # class ScriptRunnerFrame
-
-end # module Cosmos
+# encoding: ascii-8bit
+
+# Copyright 2014 Ball Aerospace & Technologies Corp.
+# All Rights Reserved.
+#
+# This program is free software; you can modify and/or redistribute it
+# under the terms of the GNU General Public License
+# as published by the Free Software Foundation; version 3 with
+# attribution addendums as found in the LICENSE.txt
+
+require 'cosmos'
+require 'cosmos/script'
+require 'cosmos/gui/utilities/script_module_gui'
+require 'cosmos/gui/dialogs/splash'
+require 'cosmos/gui/dialogs/exception_dialog'
+require 'cosmos/gui/text/completion'
+require 'cosmos/gui/text/completion_line_edit'
+require 'cosmos/gui/text/ruby_editor'
+require 'cosmos/gui/dialogs/progress_dialog'
+require 'cosmos/gui/widgets/realtime_button_bar'
+require 'cosmos/gui/dialogs/find_replace_dialog'
+require 'cosmos/gui/choosers/file_chooser'
+require 'cosmos/io/stdout'
+require 'cosmos/io/stderr'
+
+module Cosmos
+
+  Cosmos.disable_warnings do
+    module Script
+      def prompt_for_script_abort
+        ScriptRunnerFrame.instance.perform_pause
+        return false # Not aborted - Retry
+      end
+    end
+  end
+
+  class ScriptRunnerDialog < Qt::Dialog
+    attr_reader :script_runner_frame
+
+    def initialize(parent,
+                   title,
+                   default_tab_text = 'Untitled')
+      super(parent)
+      setWindowTitle(title)
+      setMinimumWidth(parent.width * 0.8)
+      setMinimumHeight(parent.height * 0.6)
+
+      # Create script runner frame
+      @script_runner_frame = ScriptRunnerFrame.new(self, default_tab_text)
+      layout = Qt::VBoxLayout.new
+      layout.addWidget(@script_runner_frame)
+      setLayout(layout)
+    end
+
+    # Executes the given text and closes when complete
+    def execute_text_and_close_on_complete(text, text_binding = nil)
+      @script_runner_frame.set_text(text)
+      @script_runner_frame.run_and_close_on_complete(text_binding)
+      exec
+      dispose
+    end
+
+    def reject
+      # Don't allow the dialog to close if we're running
+      return if @script_runner_frame.running?
+      super
+    end
+  end # class ScriptRunnerDialog
+
+  class ScriptRunnerFrame < Qt::Widget
+    slots 'context_menu(const QPoint&)'
+    slots 'undo_available(bool)'
+    slots 'breakpoint_set(int)'
+    slots 'breakpoint_cleared(int)'
+    slots 'breakpoints_cleared()'
+    signals 'undoAvailable(bool)'
+    signals 'modificationChanged(bool)'
+
+    CMD_KEYWORDS     = %w(cmd cmd_no_range_check cmd_no_hazardous_check cmd_no_checks)
+    TLM_KEYWORDS     = %w(tlm tlm_raw tlm_formatted tlm_with_units limits_enabled? \
+                          enable_limits disable_limits wait_tolerance wait_tolerance_raw \
+                          check_tolerance check_tolerance_raw wait_check_tolerance \
+                          wait_check_tolerance_raw)
+    SET_TLM_KEYWORDS = %w(set_tlm set_tlm_raw)
+    CHECK_KEYWORDS   = %w(check check_raw wait wait_raw wait_check wait_check_raw)
+
+    attr_accessor :use_instrumentation
+    attr_accessor :change_callback
+    attr_accessor :run_callback
+    attr_accessor :stop_callback
+    attr_accessor :error_callback
+    attr_accessor :pause_callback
+    attr_reader :filename
+    attr_accessor :continue_after_error
+    attr_accessor :exceptions
+    attr_accessor :script_binding
+    attr_accessor :inline_return
+    attr_accessor :inline_return_params
+    attr_reader   :message_log
+    attr_reader   :script_class
+    attr_reader   :top_level_instrumented_cache
+    attr_accessor :stdout_max_lines
+    attr_reader   :script
+
+    @@instance = nil
+    @@run_thread = nil
+    @@breakpoints = {}
+    @@step_mode = false
+    @@line_delay = 0.1
+    @@instrumented_cache = {}
+    @@file_cache = {}
+    @@output_thread = nil
+    @@limits_monitor_thread = nil
+    @@pause_on_error = true
+    @@monitor_limits = false
+    @@pause_on_red = false
+    @@show_backtrace = false
+    @@error = nil
+    @@output_sleeper = Sleeper.new
+    @@limits_sleeper = Sleeper.new
+    @@cancel_output = false
+    @@cancel_limits = false
+
+    def initialize(parent, default_tab_text = 'Untitled')
+      super(parent)
+      @default_tab_text = '  ' + default_tab_text + '  '
+      # Keep track of whether this frame has been fully initialized
+      @initialized = false
+      @debug_frame = nil
+
+      @layout = Qt::VBoxLayout.new
+      @layout.setContentsMargins(0,0,0,0)
+
+      # Add Realtime Button Bar
+      @realtime_button_bar = RealtimeButtonBar.new(self)
+      @realtime_button_bar.state = 'Stopped'
+      @realtime_button_bar.start_callback = method(:handle_start_go_button)
+      @realtime_button_bar.pause_callback = method(:handle_pause_retry_button)
+      @realtime_button_bar.stop_callback  = method(:handle_stop_button)
+      @layout.addWidget(@realtime_button_bar)
+
+      # Create a splitter to hold the script text area and the script output text area.
+      @splitter = Qt::Splitter.new(Qt::Vertical, self)
+      @layout.addWidget(@splitter)
+      @top_widget = Qt::Widget.new(@splitter)
+      @top_widget.setContentsMargins(0,0,0,0)
+      @top_frame = Qt::VBoxLayout.new(@top_widget)
+      @top_frame.setContentsMargins(0,0,0,0)
+
+      # Add Initial Text Window
+      @script = create_ruby_editor()
+      @script.connect(SIGNAL('modificationChanged(bool)')) do |changed|
+        emit modificationChanged(changed)
+      end
+      @top_frame.addWidget(@script)
+
+      # Set self as the gui window to allow prompts and other popups to appear
+      set_cmd_tlm_gui_window(self)
+
+      # Add change handlers
+      connect(@script,
+              SIGNAL('undoAvailable(bool)'),
+              self,
+              SLOT('undo_available(bool)'))
+
+      # Add Output Text
+      @bottom_frame = Qt::Widget.new
+      @bottom_layout = Qt::VBoxLayout.new
+      @bottom_layout.setContentsMargins(0,0,0,0)
+      @bottom_layout_label = Qt::Label.new("Script Output:")
+      @bottom_layout.addWidget(@bottom_layout_label)
+      @output = Qt::PlainTextEdit.new
+      @output.setReadOnly(true)
+      @output.setMaximumBlockCount(100)
+      @bottom_layout.addWidget(@output)
+      @bottom_frame.setLayout(@bottom_layout)
+      @splitter.addWidget(@bottom_frame)
+      @splitter.setStretchFactor(0,10)
+      @splitter.setStretchFactor(1,1)
+
+      setLayout(@layout)
+
+      # Configure Variables
+      @line_offset = 0
+      @filename = ''
+      @output_io = StringIO.new('', 'r+')
+      @output_io_mutex = Mutex.new
+      @change_callback = nil
+      @run_callback = nil
+      @stop_callback = nil
+      @error_callback = nil
+      @pause_callback = nil
+      @key_press_callback = nil
+      @allow_start = true
+      @continue_after_error = true
+      @debug_text = nil
+      @debug_history = []
+      @debug_code_completion = nil
+      @top_level_instrumented_cache = nil
+      @output_time = Time.now
+      initialize_variables()
+
+      # Redirect $stdout and $stderr
+      redirect_io()
+
+      # Create Tabbook
+      @tab_book = Qt::TabWidget.new
+      @tab_book_shown = false
+
+      @find_dialog = nil
+      @replace_dialog = nil
+
+      mark_breakpoints('')
+    end
+
+    def current_tab_filename
+      if @tab_book_shown
+        filename = @tab_book.tabText(@tab_book.currentIndex)
+        if filename == @default_tab_text
+          return ''
+        else
+          return filename.strip
+        end
+      else
+        return @filename
+      end
+    end
+
+    def create_ruby_editor
+      # Add Initial Text Window
+      script = RubyEditor.new(self)
+      script.enable_breakpoints = true if @debug_frame
+      connect(script,
+              SIGNAL('breakpoint_set(int)'),
+              self,
+              SLOT('breakpoint_set(int)'))
+      connect(script,
+              SIGNAL('breakpoint_cleared(int)'),
+              self,
+              SLOT('breakpoint_cleared(int)'))
+      connect(script,
+              SIGNAL('breakpoints_cleared()'),
+              self,
+              SLOT('breakpoints_cleared()'))
+
+      # Add right click menu
+      script.setContextMenuPolicy(Qt::CustomContextMenu)
+      connect(script,
+              SIGNAL('customContextMenuRequested(const QPoint&)'),
+              self,
+              SLOT('context_menu(const QPoint&)'))
+
+      return script
+    end
+
+    def stop_message_log
+      @message_log.stop if @message_log
+      @message_log = nil
+    end
+
+    def filename=(filename)
+      # Stop the message log so a new one will be created with the new filename
+      stop_message_log()
+      @filename = filename
+      mark_breakpoints(filename)
+    end
+
+    def modified
+      @script.document.isModified()
+    end
+
+    def modified=(bool)
+      @script.document.setModified(bool)
+    end
+
+    def undo_available(bool)
+      emit undoAvailable(bool)
+    end
+
+    def key_press_callback=(callback)
+      @script.keyPressCallback = callback
+    end
+
+    def setFocus
+      @script.setFocus
+    end
+
+    def allow_start=(value)
+      @allow_start = value
+      if @allow_start
+        @realtime_button_bar.start_button.setEnabled(true)
+      elsif not running?
+        @realtime_button_bar.start_button.setEnabled(false)
+        @script.setReadOnly(true)
+      end
+    end
+
+    def clear
+      self.set_text('')
+      self.filename = ''
+      self.modified = false
+    end
+
+    def self.instance
+      @@instance
+    end
+
+    def self.instance=(value)
+      @@instance = value
+    end
+
+    def self.step_mode
+      @@step_mode
+    end
+
+    def self.step_mode=(value)
+      @@step_mode = value
+      if self.instance
+        if value
+          self.instance.pause
+        else
+          self.instance.go
+        end
+      end
+    end
+
+    def self.line_delay
+      @@line_delay
+    end
+
+    def self.line_delay=(value)
+      @@line_delay = value
+    end
+
+    def self.instrumented_cache
+      @@instrumented_cache
+    end
+
+    def self.instrumented_cache=(value)
+      @@instrumented_cache = value
+    end
+
+    def self.pause_on_error
+      @@pause_on_error
+    end
+
+    def self.pause_on_error=(value)
+      @@pause_on_error = value
+    end
+
+    def self.monitor_limits
+      @@monitor_limits
+    end
+
+    def self.monitor_limits=(value)
+      @@monitor_limits = value
+    end
+
+    def self.pause_on_red
+      @@pause_on_red
+    end
+
+    def self.pause_on_red=(value)
+      @@pause_on_red = value
+    end
+
+    def self.show_backtrace
+      @@show_backtrace
+    end
+
+    def self.show_backtrace=(value)
+      @@show_backtrace = value
+      if @@show_backtrace and @@error
+        puts Time.now.formatted + " (SCRIPTRUNNER): "  + "Most recent exception:\n" + @@error.formatted
+      end
+    end
+
+    def text
+      @script.toPlainText.gsub("\r", '')
+    end
+
+    def set_text(text, filename = '')
+      unless running?()
+        @script.setPlainText(text)
+        @script.stop_highlight
+        @filename = filename
+        mark_breakpoints(filename)
+      end
+    end
+
+    def set_text_from_file(filename)
+      unless running?()
+        @@file_cache[filename] = nil
+        load_file_into_script(filename)
+        @filename = filename
+      end
+    end
+
+    def self.running?
+      if @@run_thread then true else false end
+    end
+
+    def running?
+      if @@instance == self and ScriptRunnerFrame.running?() then true else false end
+    end
+
+    def go
+      @go    = true
+      @pause = false unless @@step_mode
+    end
+
+    def go?
+      temp = @go
+      @go = false
+      temp
+    end
+
+    def pause
+      @pause = true
+      @go    = false
+    end
+
+    def pause?
+      @pause
+    end
+
+    def self.stop!
+      if @@run_thread
+        Cosmos.kill_thread(nil, @@run_thread)
+        @@run_thread = nil
+      end
+    end
+
+    def stop?
+      @stop
+    end
+
+    def retry_needed?
+      @retry_needed
+    end
+
+    def retry_needed
+      @retry_needed = true
+    end
+
+    def disable_retry
+      @realtime_button_bar.start_button.setText('Skip')
+      @realtime_button_bar.pause_button.setDisabled(true)
+    end
+
+    def enable_retry
+      @realtime_button_bar.start_button.setText('Go')
+      @realtime_button_bar.pause_button.setDisabled(false)
+    end
+
+    def run
+      unless self.class.running?()
+        run_text(@script.toPlainText)
+      end
+    end
+
+    def run_and_close_on_complete(text_binding = nil)
+      run_text(@script.toPlainText, 0, text_binding, true)
+    end
+
+    def self.instrument_script(text, filename, mark_private = false)
+      if filename and !filename.empty?
+        @@file_cache[filename] = text.clone
+      end
+
+      ruby_lex_utils = RubyLexUtils.new
+      instrumented_text = ''
+
+      Qt.execute_in_main_thread(true) do
+        window = Qt::CoreApplication.instance.activeWindow
+        @cancel_instrumentation = false
+        ProgressDialog.execute(window, # parent
+                               "Instrumenting: #{File.basename(filename.to_s)}",
+                               500,    # width
+                               100,    # height
+                               true,   # show overall progress
+                               false,  # don't show step progress
+                               false,  # don't show text
+                               false,  # don't show done
+                               true) do |progress_dialog| # show cancel
+          progress_dialog.cancel_callback = lambda {|dialog| @cancel_instrumentation = true; [true, false]}
+          progress_dialog.enable_cancel_button
+          comments_removed_text = ruby_lex_utils.remove_comments(text)
+          num_lines = comments_removed_text.num_lines.to_f
+          num_lines = 1 if num_lines < 1
+          instrumented_text =
+            instrument_script_implementation(ruby_lex_utils,
+                                             comments_removed_text,
+                                             num_lines,
+                                             progress_dialog,
+                                             filename,
+                                             mark_private)
+          progress_dialog.close_done
+        end
+      end
+
+      Kernel.raise StopScript if @cancel_instrumentation or ProgressDialog.canceled?
+      instrumented_text
+    end
+
+    def self.instrument_script_implementation(ruby_lex_utils,
+                                              comments_removed_text,
+                                              num_lines,
+                                              progress_dialog,
+                                              filename,
+                                              mark_private = false)
+      if mark_private
+        instrumented_text = 'private; '
+      else
+        instrumented_text = ''
+      end
+
+      ruby_lex_utils.each_lexed_segment(comments_removed_text) do |segment, instrumentable, inside_begin, line_no|
+        return nil if @cancel_instrumentation
+        instrumented_line = ''
+        if instrumentable
+          # If not inside a begin block then create one to catch exceptions
+          unless inside_begin
+            instrumented_line << 'begin; '
+          end
+
+          # Add preline instrumentation
+          instrumented_line << "ScriptRunnerFrame.instance.script_binding = binding(); if ScriptRunnerFrame.instance.inline_return then ScriptRunnerFrame.instance.inline_return = nil; return ScriptRunnerFrame.instance.inline_return_params; end; ScriptRunnerFrame.instance.pre_line_instrumentation('#{filename}', #{line_no}); "
+
+          # Add the actual line
+          instrumented_line << segment
+          instrumented_line.chomp!
+
+          # Add postline instrumentation
+          instrumented_line << "; ScriptRunnerFrame.instance.post_line_instrumentation('#{filename}', #{line_no})"
+
+          # Complete begin block to catch exceptions
+          unless inside_begin
+            instrumented_line << "; rescue Exception => eval_error; retry if ScriptRunnerFrame.instance.exception_instrumentation(eval_error, '#{filename}', #{line_no}); end"
+          end
+
+          instrumented_line << "\n"
+        else
+          unless segment =~ /^\s*end\s*$/ or segment =~ /^\s*when .*$/
+            num_left_brackets = segment.count('{')
+            num_right_brackets = segment.count('}')
+            num_left_square_brackets = segment.count('[')
+            num_right_square_brackets = segment.count(']')
+
+            if (num_right_brackets > num_left_brackets) ||
+              (num_right_square_brackets > num_left_square_brackets)
+              instrumented_line = segment
+            else
+              instrumented_line = "ScriptRunnerFrame.instance.pre_line_instrumentation('#{filename}', #{line_no}); " + segment
+            end
+          else
+            instrumented_line = segment
+          end
+        end
+
+        instrumented_text << instrumented_line
+
+        progress_dialog.set_overall_progress(line_no / num_lines) if progress_dialog and line_no
+      end
+      instrumented_text
+    end
+
+    def pre_line_instrumentation(filename, line_number)
+      @current_filename = filename
+      @current_line_number = line_number
+      if @use_instrumentation
+        # Clear go
+        @go = false
+
+        # Handle stopping mid-script if necessary
+        Kernel.raise StopScript if @stop
+
+        # Handle needing to change tabs
+        handle_potential_tab_change(filename)
+
+        # Adjust line number for offset in main script
+        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
+        detail_string = nil
+        if filename
+          detail_string = File.basename(filename) << ':' << line_number.to_s
+        end
+        Logger.detail_string = detail_string
+
+        # Highlight the line that is about to run
+        Qt.execute_in_main_thread(true) {@active_script.highlight_line(line_number)}
+
+        # Handle pausing the script
+        handle_pause(filename, line_number)
+
+        # Handle delay between lines
+        handle_line_delay()
+      end
+    end
+
+    def post_line_instrumentation(filename, line_number)
+      if @use_instrumentation
+        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
+        handle_output_io(filename, line_number)
+      end
+    end
+
+    def exception_instrumentation(error, filename, line_number)
+      if error.class == StopScript || error.class == SkipTestCase || !@use_instrumentation
+        Kernel.raise error
+      else
+        line_number = line_number + @line_offset if @active_script.object_id == @script.object_id
+        handle_exception(error, false, filename, line_number)
+      end
+    end
+
+    def perform_pause
+      mark_paused()
+      wait_for_go_or_stop()
+    end
+
+    def perform_breakpoint(filename, line_number)
+      mark_breakpoint()
+      scriptrunner_puts "Hit Breakpoint at #{filename}:#{line_number}"
+      handle_output_io(filename, line_number)
+      wait_for_go_or_stop()
+    end
+
+    # Prompts the user that a script is running before they close the app
+    def prompt_if_running_on_close
+      safe_to_continue = true
+      if running?
+        case Qt::MessageBox.warning(
+          self,      # parent
+          'Warning', # title
+          'A Script is Running! Close Anyways?', # text
+          Qt::MessageBox::Yes | Qt::MessageBox::No, # buttons
+          Qt::MessageBox::No) # default button
+        when Qt::MessageBox::Yes
+          safe_to_continue = true
+          ScriptRunnerFrame.stop!
+        else
+          safe_to_continue = false
+        end
+      end
+      return safe_to_continue
+    end
+
+    ######################################
+    # Implement the breakpoint callbacks from the RubyEditor
+    ######################################
+    def breakpoint_set(line)
+      ScriptRunnerFrame.set_breakpoint(current_tab_filename(), line)
+    end
+
+    def breakpoint_cleared(line)
+      ScriptRunnerFrame.clear_breakpoint(current_tab_filename(), line)
+    end
+
+    def breakpoints_cleared
+      ScriptRunnerFrame.clear_breakpoints(current_tab_filename())
+    end
+
+    ######################################
+    # Implement edit functionality in the frame (cut, copy, paste, etc)
+    ######################################
+    def undo
+      @script.undo unless running?()
+    end
+
+    def redo
+      @script.redo unless running?()
+    end
+
+    def cut
+      @script.cut unless running?()
+    end
+
+    def copy
+      @script.copy unless running?()
+    end
+
+    def paste
+      @script.paste unless running?()
+    end
+
+    def select_all
+      @script.select_all unless running?()
+    end
+
+    def comment_or_uncomment_lines
+      @script.comment_or_uncomment_lines unless running?()
+    end
+
+    ##################################################################################
+    # Implement Script functionality in the frame (run selection, run from cursor, etc
+    ##################################################################################
+    def run_selection
+      unless self.class.running?()
+        selection = @script.selected_lines
+        if selection
+          start_line_number = @script.selection_start_line
+          end_line_number   = @script.selection_end_line
+          scriptrunner_puts "Running script lines #{start_line_number+1}-#{end_line_number+1}: #{File.basename(@filename)}"
+          handle_output_io()
+          run_text(selection, start_line_number)
+        end
+      end
+    end
+
+    def run_selection_while_paused
+      current_script = @tab_book.tab(@tab_book.currentIndex)
+      selection = current_script.selected_lines
+      if selection
+        start_line_number = current_script.selection_start_line
+        end_line_number   = current_script.selection_end_line
+        scriptrunner_puts "Debug: Running selected lines #{start_line_number+1}-#{end_line_number+1}: #{@tab_book.tabText(@tab_book.currentIndex)}"
+        handle_output_io()
+        dialog = ScriptRunnerDialog.new(self, 'Executing Selected Lines While Paused')
+        dialog.execute_text_and_close_on_complete(selection, @script_binding)
+        handle_output_io()
+      end
+    end
+
+    def run_from_cursor
+      unless self.class.running?()
+        line_number = @script.selection_start_line
+        text = @script.toPlainText.split("\n")[line_number..-1].join("\n")
+        scriptrunner_puts "Running script from line #{line_number}: #{File.basename(@filename)}"
+        handle_output_io()
+        run_text(text, line_number)
+      end
+    end
+
+    def ruby_syntax_check_selection
+      unless self.class.running?()
+        selection = @script.selected_lines
+        ruby_syntax_check_text(selection) if selection
+      end
+    end
+
+    def ruby_syntax_check_text(selection = nil)
+      unless self.class.running?()
+        selection = text() unless selection
+        check_process = IO.popen("ruby -c -rubygems 2>&1", 'r+')
+        check_process.write("require 'cosmos'; require 'cosmos/script'; " + selection)
+        check_process.close_write
+        results = check_process.gets
+        check_process.close
+        if results
+          if results =~ /Syntax OK/
+            Qt::MessageBox.information(self, 'Syntax Check Successful', results)
+          else
+            # Results is a string like this: ":2: syntax error ..."
+            # Normally the procedure comes before the first colon but since we
+            # are writing to the process this is blank so we throw it away
+            _, line_no, error = results.split(':')
+            Qt::MessageBox.warning(self,
+                                   'Syntax Check Failed',
+                                   "Error on line #{line_no}: #{error.strip}")
+          end
+        else
+          Qt::MessageBox.critical(self,
+                                  'Syntax Check Exception',
+                                  'Ruby syntax check unexpectedly returned nil')
+        end
+      end
+    end
+
+    def mnemonic_check_selection
+      unless self.class.running?()
+        selection = @script.selected_lines
+        mnemonic_check_text(selection, @script.selection_start_line+1) if selection
+      end
+    end
+
+    def mnemonic_check_text(text, start_line_number = 1)
+      results = []
+      line_number = start_line_number
+      text.each_line do |line|
+        if line =~ /\(/
+          result = nil
+          keyword = line.split('(')[0].split[-1]
+          if CMD_KEYWORDS.include? keyword
+            result = mnemonic_check_cmd_line(keyword, line_number, line)
+          elsif TLM_KEYWORDS.include? keyword
+            result = mnemonic_check_tlm_line(keyword, line_number, line)
+          elsif SET_TLM_KEYWORDS.include? keyword
+            result = mnemonic_check_set_tlm_line(keyword, line_number, line)
+          elsif CHECK_KEYWORDS.include? keyword
+            result = mnemonic_check_check_line(keyword, line_number, line)
+          end
+          results << result if result
+        end
+        line_number += 1
+      end
+
+      if results.empty?
+        Qt::MessageBox.information(self,
+                                   'Mnemonic Check Successful',
+                                   'Mnemonic Check Found No Errors')
+      else
+        dialog = Qt::Dialog.new(self) do |box|
+          box.setWindowTitle('Mnemonic Check Failed')
+          text = Qt::PlainTextEdit.new
+          text.setReadOnly(true)
+          text.setPlainText(results.join("\n"))
+          frame = Qt::VBoxLayout.new(box)
+          ok = Qt::PushButton.new('Ok')
+          ok.setDefault(true)
+          ok.connect(SIGNAL('clicked(bool)')) { box.accept }
+          frame.addWidget(text)
+          frame.addWidget(ok)
+        end
+        dialog.exec
+        dialog.dispose
+      end
+    end
+
+    ######################################################
+    # Implement the debug capability
+    ######################################################
+    def toggle_debug(debug = nil)
+      if debug.nil?
+        if @debug_frame
+          hide_debug()
+        else
+          show_debug()
+        end
+      else
+        if debug
+          if !@debug_frame
+            show_debug()
+          end
+        else
+          if @debug_frame
+            hide_debug()
+          end
+        end
+      end
+    end
+
+    def show_debug
+      unless @debug_frame
+        @script.enable_breakpoints = true
+        if @tab_book_shown
+          if @tab_book.count > 0
+            (0..(@tab_book.count - 1)).each do |index|
+              @tab_book.tab(index).enable_breakpoints = true
+            end
+          end
+        end
+
+        @debug_frame = Qt::HBoxLayout.new
+        @debug_frame.setContentsMargins(0,0,0,0)
+        @debug_frame_label = Qt::Label.new("Debug:")
+        @debug_frame.addWidget(@debug_frame_label)
+        @debug_text = CompletionLineEdit.new(self)
+        @debug_text.setFocus(Qt::OtherFocusReason)
+        @debug_text.keyPressCallback = lambda { |event|
+          case event.key
+          when Qt::Key_Return, Qt::Key_Enter
+            begin
+              debug_text = @debug_text.toPlainText
+              @debug_history.unshift(debug_text)
+              @debug_history_index = 0
+              @debug_text.setPlainText('')
+              scriptrunner_puts "Debug: #{debug_text}"
+              handle_output_io()
+              if not running?
+                # Capture STDOUT and STDERR
+                $stdout.add_stream(@output_io)
+                $stderr.add_stream(@output_io)
+              end
+
+              if @script_binding
+                eval(debug_text, @script_binding, 'debug', 1)
+              else
+                Object.class_eval(debug_text, 'debug', 1)
+              end
+              handle_output_io()
+            rescue Exception => error
+              if error.class == DRb::DRbConnError
+                Logger.error("Error Connecting to Command and Telemetry Server")
+              else
+                Logger.error(error.class.to_s.split('::')[-1] + ' : ' + error.message)
+              end
+              handle_output_io()
+            ensure
+              if not running?
+                # Capture STDOUT and STDERR
+                $stdout.remove_stream(@output_io)
+                $stderr.remove_stream(@output_io)
+              end
+            end
+          when Qt::Key_Up
+            if @debug_history.length > 0
+              @debug_text.setPlainText(@debug_history[@debug_history_index])
+              @debug_history_index += 1
+              if @debug_history_index == @debug_history.length
+                @debug_history_index = @debug_history.length-1
+              end
+            end
+          when Qt::Key_Down
+            if @debug_history.length > 0
+              @debug_text.setPlainText(@debug_history[@debug_history_index])
+              @debug_history_index -= 1
+              @debug_history_index = 0 if @debug_history_index < 0
+            end
+          when Qt::Key_Escape
+            @debug_text.setPlainText("")
+          end
+        }
+
+        @debug_frame.addWidget(@debug_text)
+
+        @toggle_button = Qt::PushButton.new('Toggle Run/Step')
+        @debug_frame.addWidget(@toggle_button)
+        @toggle_button.connect(SIGNAL('clicked(bool)')) do
+          if @@step_mode
+            scriptrunner_puts "Debug: run_mode"
+            handle_output_io()
+            self.class.step_mode = false
+          else
+            scriptrunner_puts "Debug: step_mode"
+            handle_output_io()
+            self.class.step_mode = true
+          end
+        end
+
+        @return_button = Qt::PushButton.new('Insert Return')
+        @debug_frame.addWidget(@return_button)
+        @return_button.connect(SIGNAL('clicked(bool)')) do
+          scriptrunner_puts "Debug: insert_return(); ScriptRunnerFrame.instance.go()"
+          handle_output_io()
+          insert_return()
+          go()
+        end
+
+        @bottom_frame.layout.addLayout(@debug_frame)
+      end
+    end
+
+    def hide_debug
+      # Since we're disabling debug, clear the breakpoints and disable them
+      ScriptRunnerFrame.clear_breakpoints()
+      @script.clear_breakpoints
+      @script.enable_breakpoints = false
+      if @tab_book_shown
+        if @tab_book.count > 0
+          (0..(@tab_book.count - 1)).each do |index|
+            @tab_book.tab(index).enable_breakpoints = false
+          end
+        end
+      end
+      # Remove the debug frame
+      @bottom_frame.layout.takeAt(@bottom_frame.layout.count - 1) if @debug_frame
+      @debug_frame.removeAll
+      @debug_frame.dispose
+      @debug_frame = nil
+    end
+
+    def self.set_breakpoint(filename, line_number)
+      filename = File.basename(filename)
+      @@breakpoints[filename] ||= {}
+      @@breakpoints[filename][line_number] = true
+    end
+
+    def self.clear_breakpoint(filename, line_number)
+      filename = File.basename(filename)
+      @@breakpoints[filename] ||= {}
+      @@breakpoints[filename].delete(line_number) if @@breakpoints[filename][line_number]
+    end
+
+    def self.clear_breakpoints(filename = nil)
+      filename = File.basename(filename) unless filename.nil?
+      if filename == nil or filename.empty?
+        @@breakpoints = {}
+      else
+        @@breakpoints[filename] = {}
+      end
+    end
+
+    def select_tab_and_destroy_tabs_after_index(index)
+      Qt.execute_in_main_thread(true) do
+        if @tab_book_shown
+          @tab_book.setCurrentIndex(index)
+          @active_script = @tab_book.tab(@tab_book.currentIndex)
+
+          first_to_remove = index + 1
+          last_to_remove  = @call_stack.length - 1
+
+          last_to_remove.downto(first_to_remove) do |tab_index|
+            tab = @tab_book.tab(tab_index)
+            @tab_book.removeTab(tab_index)
+            tab.dispose
+          end
+
+          @call_stack = @call_stack[0..index]
+          @current_file = @call_stack[index]
+        end
+      end
+    end
+
+    def toggle_disconnect(config_file)
+      if get_cmd_tlm_disconnect
+        set_cmd_tlm_disconnect(false)
+        self.parent.setPalette(Cosmos::DEFAULT_PALETTE)
+      else
+        dialog = Qt::Dialog.new(self, Qt::WindowTitleHint | Qt::WindowSystemMenuHint)
+        dialog.setWindowTitle(tr("Server Config File"))
+        dialog_layout = Qt::VBoxLayout.new
+
+        chooser = FileChooser.new(self, "Config File", config_file, 'Select',
+                                  File.join('config', 'tools', 'cmd_tlm_server', config_file))
+        chooser.callback = lambda do |filename|
+          chooser.filename = File.basename(filename)
+        end
+        dialog_layout.addWidget(chooser)
+
+        button_layout = Qt::HBoxLayout.new
+        ok = Qt::PushButton.new("Ok")
+        ok.setDefault(true)
+        ok.connect(SIGNAL('clicked()')) do
+          dialog.accept()
+        end
+        button_layout.addWidget(ok)
+        cancel = Qt::PushButton.new("Cancel")
+        cancel.connect(SIGNAL('clicked()')) do
+          dialog.reject()
+        end
+        button_layout.addWidget(cancel)
+        dialog_layout.addLayout(button_layout)
+
+        dialog.setLayout(dialog_layout)
+        if dialog.exec == Qt::Dialog::Accepted
+          config_file = chooser.filename
+          self.parent.setPalette(Cosmos::RED_PALETTE)
+          Splash.execute(self) do |splash|
+            ConfigParser.splash = splash
+            splash.message = "Initializing Command and Telemetry Server"
+            set_cmd_tlm_disconnect(true, config_file)
+            ConfigParser.splash = nil
+          end
+        end
+        dialog.dispose
+      end
+      config_file
+    end
+
+    def current_backtrace
+      trace = []
+      Qt.execute_in_main_thread(true) do
+        if @@run_thread
+          temp_trace = @@run_thread.backtrace
+          cosmos_lib = Regexp.new(File.join(Cosmos::PATH, 'lib'))
+          temp_trace.each do |line|
+            next if line =~ cosmos_lib
+            trace << line
+          end
+        end
+      end
+      trace
+    end
+
+    def scriptrunner_puts(string)
+      puts Time.now.formatted + " (SCRIPTRUNNER): "  + string
+    end
+
+    def handle_output_io(filename = @current_filename, line_number = @current_line_number)
+      @output_time = Time.now
+      Qt.execute_in_main_thread(true) do
+        if @output_io.string[-1..-1] == "\n"
+          time_formatted = Time.now.formatted
+          lines_to_write = ''
+          out_line_number = line_number.to_s
+          out_filename = File.basename(filename) if filename
+
+          # Build each line to write
+          string = @output_io.string.clone
+          @output_io.string = @output_io.string[string.length..-1]
+          line_count = 0
+          string.each_line do |out_line|
+            color = nil
+            if out_line[0..1] == '20' and out_line[10] == ' ' and out_line[23..24] == ' ('
+              line_to_write = out_line
+            else
+              if filename
+                line_to_write = time_formatted + " (#{out_filename}:#{out_line_number}): "  + out_line
+              else
+                line_to_write = time_formatted + " (SCRIPTRUNNER): "  + out_line
+                color = Cosmos::BLUE
+              end
+            end
+            @output.add_formatted_text(line_to_write, color)
+            lines_to_write << line_to_write
+
+            line_count += 1
+            if line_count > @stdout_max_lines
+              out_line = "ERROR: Too much written to stdout.  Truncating output to #{@stdout_max_lines} lines.\n"
+              if filename
+                line_to_write = time_formatted + " (#{out_filename}:#{out_line_number}): "  + out_line
+              else
+                line_to_write = time_formatted + " (SCRIPTRUNNER): "  + out_line
+              end
+              @output.addText(line_to_write, Cosmos::RED)
+              lines_to_write << line_to_write
+              break
+            end
+          end # string.each_line
+
+          # Actually add to the GUI
+          @output.flush
+
+          # Add to the message log
+          if @filename.empty?
+            @message_log ||= MessageLog.new("sr_untitled")
+          else
+            @message_log ||= MessageLog.new("sr_#{File.basename(@filename).split('.')[0]}")
+          end
+          @message_log.write(lines_to_write)
+        end
+      end
+    end
+
+    def graceful_kill
+      # Just to avoid warning
+    end
+
+    protected
+
+    def initialize_variables
+      @@file_cache = {}
+      @@error = nil
+      @go = false
+      if @@step_mode
+        @pause = true
+      else
+        @pause = false
+      end
+      @stop = false
+      @retry_needed = false
+      @use_instrumentation = true
+      @active_script = @script
+      @call_stack = []
+      @pre_line_time = Time.now
+      @current_file = @filename
+      @exceptions = nil
+      @script_binding = nil
+      @inline_eval = nil
+      @current_filename = nil
+      @current_line_number = 0
+      @stdout_max_lines = 1000
+
+      @script.stop_highlight
+      @call_stack.push(@current_file.dup)
+    end
+
+    def wait_for_go_or_stop(error = nil)
+      @go = false
+      sleep(0.01) until @go or @stop
+      @go = false
+      mark_running()
+      Kernel.raise StopScript if @stop
+      Kernel.raise error if error and !@continue_after_error
+    end
+
+    def wait_for_go_or_stop_or_retry(error = nil)
+      @go = false
+      sleep(0.01) until @go or @stop or @retry_needed
+      @go = false
+      mark_running()
+      Kernel.raise StopScript if @stop
+      Kernel.raise error if error and !@continue_after_error
+    end
+
+    def mark_running
+      Qt.execute_in_main_thread(true) do
+        @run_callback.call(self) if @run_callback
+        @active_script.rehighlight
+        @realtime_button_bar.state = 'Running'
+        @realtime_button_bar.start_button.setText('Go')
+        @realtime_button_bar.pause_button.setText('Pause')
+      end
+    end
+
+    def mark_paused
+      Qt.execute_in_main_thread(true) do
+        @pause_callback.call(self) if @pause_callback
+        @active_script.rehighlight('lightblue')
+        @realtime_button_bar.state = 'Paused'
+      end
+    end
+
+    def mark_error
+      Qt.execute_in_main_thread(true) do
+        @error_callback.call(self) if @error_callback
+        @active_script.rehighlight('pink')
+        @realtime_button_bar.state = 'Error'
+        @realtime_button_bar.pause_button.setText('Retry')
+      end
+    end
+
+    def mark_stopped
+      stop_message_log()
+      Qt.execute_in_main_thread(true) do
+        @realtime_button_bar.start_button.setText('Start')
+        @realtime_button_bar.pause_button.setText('Pause')
+        @realtime_button_bar.state = 'Stopped'
+        @stop_callback.call(self) if @stop_callback
+      end
+    end
+
+    def mark_breakpoint
+      Qt.execute_in_main_thread(true) do
+        @active_script.rehighlight('tan')
+        @realtime_button_bar.state = 'Breakpoint'
+      end
+    end
+
+    def run_text(text,
+                 line_offset = 0,
+                 text_binding = nil,
+                 close_on_complete = false)
+      @run_callback.call(self) if @run_callback
+      @realtime_button_bar.start_button.setEnabled(true)
+      initialize_variables()
+      create_tabs()
+      @line_offset = line_offset
+      @script.setReadOnly(true)
+      @realtime_button_bar.start_button.setText(' Go ')
+      @realtime_button_bar.state = 'Running'
+
+      saved_instance = @@instance
+      saved_run_thread = @@run_thread
+      @@instance   = self
+      @@run_thread = Thread.new do
+        uncaught_exception = false
+        begin
+          # Capture STDOUT and STDERR
+          $stdout.add_stream(@output_io)
+          $stderr.add_stream(@output_io)
+
+          scriptrunner_puts "Starting script: #{File.basename(@filename)}" unless close_on_complete
+          handle_output_io()
+
+          # Start Limits Monitoring
+          @@limits_monitor_thread = Thread.new { limits_monitor_thread() } if @@monitor_limits and !@@limits_monitor_thread
+
+          # Start Output Thread
+          @@output_thread = Thread.new { output_thread() } unless @@output_thread
+
+          # Check top level cache
+          if @top_level_instrumented_cache &&
+            (@top_level_instrumented_cache[1] == line_offset) &&
+            (@top_level_instrumented_cache[2] == @filename) &&
+            (@top_level_instrumented_cache[0] == text)
+            # Use the instrumented cache
+            instrumented_script = @top_level_instrumented_cache[3]
+          else
+            # Instrument the script
+            if text_binding
+              instrumented_script = self.class.instrument_script(text, @filename, false)
+            else
+              instrumented_script = self.class.instrument_script(text, @filename, true)
+            end
+            @top_level_instrumented_cache = [text, line_offset, @filename, instrumented_script]
+          end
+
+          # Execute the script with warnings disabled
+          Cosmos.disable_warnings do
+            @pre_line_time = Time.now
+            Cosmos.set_working_dir do
+              if text_binding
+                eval(instrumented_script, text_binding, @filename, 1)
+              else
+                Object.class_eval(instrumented_script, @filename, 1)
+              end
+            end
+          end
+
+          scriptrunner_puts "Script completed: #{File.basename(@filename)}" unless close_on_complete
+          handle_output_io()
+
+        rescue Exception => error
+          if error.class == StopScript or error.class == SkipTestCase
+            scriptrunner_puts "Script stopped: #{File.basename(@filename)}"
+            handle_output_io()
+          else
+            uncaught_exception = true
+            filename, line_number = error.source
+            handle_exception(error, true, filename, line_number)
+            scriptrunner_puts "Exception in Control Statement - Script stopped: #{File.basename(@filename)}"
+            handle_output_io()
+            Qt.execute_in_main_thread(true) {@script.rehighlight('red') }
+          end
+        ensure
+          # Change Go Button to Start Button and remove highlight
+          Qt.execute_in_main_thread(true) do
+            # Stop Capturing STDOUT and STDERR
+            # Check for remove_stream because if the tool is quitting the
+            # Cosmos::restore_io may have been called which sets $stdout and
+            # $stderr to the IO constant
+            $stdout.remove_stream(@output_io) if $stdout.respond_to? :remove_stream
+            $stderr.remove_stream(@output_io) if $stderr.respond_to? :remove_stream
+
+            # Clear run thread and instance to indicate we are no longer running
+            @@instance = saved_instance
+            @@run_thread = saved_run_thread
+            @active_script = @script
+            @script_binding = nil
+            @current_filename = nil
+            @current_line_number = 0
+            if @@limits_monitor_thread and not @@instance
+              @@cancel_limits = true
+              @@limits_sleeper.cancel
+              Qt::CoreApplication.processEvents()
+              Cosmos.kill_thread(self, @@limits_monitor_thread)
+              @@limits_monitor_thread = nil
+            end
+            if @@output_thread and not @@instance
+              @@cancel_output = true
+              @@output_sleeper.cancel
+              Qt::CoreApplication.processEvents()
+              Cosmos.kill_thread(self, @@output_thread)
+              @@output_thread = nil
+            end
+
+            @script.setReadOnly(false)
+            @script.stop_highlight unless uncaught_exception
+            select_tab_and_destroy_tabs_after_index(0)
+            remove_tabs()
+            unless @allow_start
+              @realtime_button_bar.start_button.setEnabled(false)
+              @script.setReadOnly(true)
+            end
+            mark_stopped()
+            if close_on_complete
+              self.parent.done(0)
+            end
+          end
+        end
+      end
+    end
+
+    def handle_potential_tab_change(filename)
+      # Make sure the correct file is shown in script runner
+      if @current_file != filename and @tab_book_shown
+        Qt.execute_in_main_thread(true) do
+          if @call_stack.include?(filename)
+            index = @call_stack.index(filename)
+            select_tab_and_destroy_tabs_after_index(index)
+          else # new file
+            # Create new tab
+            new_script = create_ruby_editor()
+            @tab_book.addTab(new_script, '  ' + File.basename(filename) + '  ')
+
+            @call_stack.push(filename.dup)
+
+            # Switch to new tab
+            @tab_book.setCurrentIndex(@tab_book.count - 1)
+            @active_script = new_script
+            load_file_into_script(filename)
+            new_script.setReadOnly(true)
+          end
+
+          @current_file = filename
+        end
+      end
+    end
+
+    def show_active_tab
+      @tab_book.setCurrentIndex(@call_stack.length - 1) if @tab_book_shown
+    end
+
+    def handle_pause(filename, line_number)
+      filename = File.basename(filename)
+      breakpoint = false
+      breakpoint = true if @@breakpoints[filename] and @@breakpoints[filename][line_number]
+      if @pause
+        @pause = false unless @@step_mode
+        if breakpoint
+          perform_breakpoint(filename, line_number)
+        else
+          perform_pause()
+        end
+      else
+        perform_breakpoint(filename, line_number) if breakpoint
+      end
+    end
+
+    def handle_line_delay
+      if @@line_delay > 0.0
+        sleep_time = @@line_delay - (Time.now - @pre_line_time)
+        sleep(sleep_time) if sleep_time > 0.0
+      end
+      @pre_line_time = Time.now
+    end
+
+    def continue_without_pausing_on_errors?
+      if !@@pause_on_error
+        if Qt::MessageBox.warning(self, "Warning", "If an error occurs, the script will not pause and will run to completion. Continue?", Qt::MessageBox::Yes | Qt::MessageBox::No, Qt::MessageBox::Yes) == Qt::MessageBox::No
+          return false
+        end
+      end
+      true
+    end
+
+    def handle_start_go_button
+      scriptrunner_puts "User pressed #{@realtime_button_bar.start_button.text.strip}"
+      handle_output_io()
+      @realtime_button_bar.start_button.clear_focus()
+
+      if running?()
+        show_active_tab()
+        go()
+      else
+        if @allow_start
+          run() if continue_without_pausing_on_errors?()
+        end
+      end
+    end
+
+    def handle_pause_retry_button
+      scriptrunner_puts "User pressed #{@realtime_button_bar.pause_button.text.strip}"
+      handle_output_io()
+      @realtime_button_bar.pause_button.clear_focus()
+      show_active_tab() if running?
+      if @realtime_button_bar.pause_button.text.to_s == 'Pause'
+        pause()
+      else
+        retry_needed()
+      end
+    end
+
+    def handle_stop_button
+      scriptrunner_puts "User pressed #{@realtime_button_bar.stop_button.text.strip}"
+      handle_output_io()
+      @realtime_button_bar.stop_button.clear_focus()
+
+      if @stop
+        # If we're already stopped and they click Stop again, kill the run
+        # thread. This will break any ruby sleeps or other code blocks.
+        ScriptRunnerFrame.stop!
+        handle_output_io()
+      else
+        @stop = true
+      end
+      if !running?()
+        # Stop highlight if there was a red syntax error
+        @script.stop_highlight
+      end
+    end
+
+    def handle_exception(error, fatal, filename = nil, line_number = 0)
+      @error_callback.call(self) if @error_callback
+
+      @exceptions ||= []
+      @exceptions << error
+      @@error = error
+
+      if error.class == DRb::DRbConnError
+        Logger.error("Error Connecting to Command and Telemetry Server")
+      elsif error.class == CheckError
+        Logger.error(error.message)
+      else
+        Logger.error(error.class.to_s.split('::')[-1] + ' : ' + error.message)
+      end
+      Logger.error(error.backtrace.join("\n")) if @@show_backtrace
+      handle_output_io(filename, line_number)
+
+      Kernel.raise error if !@@pause_on_error and !@continue_after_error and !fatal
+
+      if !fatal and @@pause_on_error
+        mark_error()
+        wait_for_go_or_stop_or_retry(error)
+      end
+
+      if @retry_needed
+        @retry_needed = false
+        true
+      else
+        false
+      end
+    end
+
+    # Right click context_menu for the script
+    def context_menu(point)
+      if @tab_book_shown
+        current_script = @tab_book.tab(@tab_book.currentIndex)
+      else
+        current_script = @script
+      end
+      menu = current_script.context_menu(point)
+      menu.addSeparator()
+      if not self.class.running?
+        exec_selected_action = Qt::Action.new(tr("Execute Selected Lines"), self)
+        exec_selected_action.statusTip = tr("Execute the selected lines as a standalone script")
+        exec_selected_action.connect(SIGNAL('triggered()')) { run_selection() }
+        menu.addAction(exec_selected_action)
+
+        exec_cursor_action = Qt::Action.new(tr("Execute From Cursor"), self)
+        exec_cursor_action.statusTip = tr("Execute the script starting at the line containing the cursor")
+        exec_cursor_action.connect(SIGNAL('triggered()')) { run_from_cursor() }
+        menu.addAction(exec_cursor_action)
+
+        menu.addSeparator()
+
+        if RUBY_VERSION.split('.')[0].to_i > 1
+          syntax_action = Qt::Action.new(tr("Ruby Syntax Check Selected Lines"), self)
+          syntax_action.statusTip = tr("Check the selected lines for valid Ruby syntax")
+          syntax_action.connect(SIGNAL('triggered()')) { ruby_syntax_check_selection() }
+          menu.addAction(syntax_action)
+        end
+
+        mnemonic_action = Qt::Action.new(tr("Mnemonic Check Selected Lines"), self)
+        mnemonic_action.statusTip = tr("Check the selected lines for valid targets, packets, mnemonics and parameters")
+        mnemonic_action.connect(SIGNAL('triggered()')) { mnemonic_check_selection() }
+        menu.addAction(mnemonic_action)
+
+      elsif running?() and @realtime_button_bar.state != 'Running'
+        exec_selected_action = Qt::Action.new(tr("Execute Selected Lines While Paused"), self)
+        exec_selected_action.statusTip = tr("Execute the selected lines as a standalone script")
+        exec_selected_action.connect(SIGNAL('triggered()')) { run_selection_while_paused() }
+        menu.addAction(exec_selected_action)
+      end
+      menu.exec(current_script.mapToGlobal(point))
+      menu.dispose
+    end
+
+    def load_file_into_script(filename)
+      cached = @@file_cache[filename]
+      if cached
+        @active_script.setPlainText(cached.gsub("\r", ''))
+      else
+        @active_script.setPlainText(File.read(filename).gsub("\r", ''))
+      end
+      mark_breakpoints(filename)
+
+      @active_script.stop_highlight
+    end
+
+    def mark_breakpoints(filename)
+      @active_script.clear_breakpoints
+      breakpoints = @@breakpoints[File.basename(filename)]
+      if breakpoints
+        breakpoints.each do |line_number, present|
+          @active_script.add_breakpoint(line_number) if present
+        end
+      end
+    end
+
+    def redirect_io
+      # Redirect Standard Output and Standard Error
+      $stdout = Stdout.instance
+      $stderr = Stderr.instance
+
+      # Disable outputting to default io file descriptors
+      $stdout.remove_default_io
+      $stderr.remove_default_io
+
+      Logger.level = Logger::INFO
+      Logger::INFO_SEVERITY_STRING.replace('')
+      Logger::WARN_SEVERITY_STRING.replace('<Y> WARN:')
+      Logger::ERROR_SEVERITY_STRING.replace('<R> ERROR:')
+    end
+
+    def create_tabs
+      tab_text = @default_tab_text
+      tab_text = '  ' + File.basename(@filename) + '  ' unless @filename.empty?
+      @tab_book.addTab(@script, tab_text)
+      @top_frame.insertWidget(0, @tab_book)
+      @tab_book_shown = true
+    end
+
+    def remove_tabs
+      @top_frame.takeAt(0) # Remove the @tab_book from the layout
+      @top_frame.addWidget(@script) # Add back the script
+      @script.show
+      @tab_book_shown = false
+    end
+
+    def isolate_string(keyword, line)
+      found_string = nil
+
+      # Find keyword
+      keyword_index = line.index(keyword)
+
+      # Remove keyword from line
+      line = line[(keyword_index + keyword.length)..-1]
+
+      # Find start parens
+      start_parens = line.index('(')
+      if start_parens
+        end_parens   = line[start_parens..-1].index(')')
+        found_string = line[(start_parens + 1)..(end_parens + start_parens - 1)].remove_quotes if end_parens
+        if keyword == 'wait' or keyword == 'wait_check'
+          quote_index = found_string.rindex('"')
+          quote_index = found_string.rindex("'") unless quote_index
+          if quote_index
+            found_string = found_string[0..quote_index].remove_quotes
+          else
+            found_string = nil
+          end
+        end
+      end
+      found_string
+    end
+
+    def mnemonic_check_cmd_line(keyword, line_number, line)
+      result = nil
+
+      # Isolate the string
+      string = isolate_string(keyword, line)
+      if string
+        begin
+          target_name, cmd_name, cmd_params = extract_fields_from_cmd_text(string)
+          result = "At line #{line_number}: Unknown command: #{target_name} #{cmd_name}"
+          packet = System.commands.packet(target_name, cmd_name)
+          Kernel.raise "Command not found" unless packet
+          cmd_params.each do |param_name, param_value|
+            result = "At line #{line_number}: Unknown command parameter: #{target_name} #{cmd_name} #{param_name}"
+            packet.get_item(param_name)
+          end
+          result = nil
+        rescue
+          if result
+            if string.index('=>')
+              # Assume alternative syntax
+              result = nil
+            end
+          else
+            result = "At line #{line_number}: Potentially malformed command: #{line}"
+          end
+        end
+      end
+
+      result
+    end
+
+    def _mnemonic_check_tlm_line(keyword, line_number, line)
+      result = nil
+
+      # Isolate the string
+      string = isolate_string(keyword, line)
+      if string
+        begin
+          target_name, packet_name, item_name = yield string
+          result = "At line #{line_number}: Unknown telemetry item: #{target_name} #{packet_name} #{item_name}"
+          System.telemetry.packet_and_item(target_name, packet_name, item_name)
+          result = nil
+        rescue
+          if result
+            if string.index(',')
+              # Assume alternative syntax
+              result = nil
+            end
+          else
+            result = "At line #{line_number}: Potentially malformed telemetry: #{line}"
+          end
+        end
+      end
+
+      result
+    end
+
+    def mnemonic_check_tlm_line(keyword, line_number, line)
+      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
+        extract_fields_from_tlm_text(string)
+      end
+    end
+
+    def mnemonic_check_set_tlm_line(keyword, line_number, line)
+      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
+        extract_fields_from_set_tlm_text(string)
+      end
+    end
+
+    def mnemonic_check_check_line(keyword, line_number, line)
+      _mnemonic_check_tlm_line(keyword, line_number, line) do |string|
+        extract_fields_from_check_text(string)
+      end
+    end
+
+    def output_thread
+      @@cancel_output = false
+      @@output_sleeper = Sleeper.new
+      begin
+        loop do
+          break if @@cancel_output
+          handle_output_io() if (Time.now - @output_time) > 5.0
+          break if @@cancel_output
+          break if @@output_sleeper.sleep(1.0)
+        end # loop
+      rescue => error
+        Qt.execute_in_main_thread(true) do
+          ExceptionDialog.new(self, error, "Output Thread")
+        end
+      end
+    end
+
+    def limits_monitor_thread
+      @@cancel_limits = false
+      @@limits_sleeper = Sleeper.new
+      queue_id = nil
+      begin
+        loop do
+          break if @@cancel_limits
+          begin
+            # Subscribe to limits notifications
+            queue_id = subscribe_limits_events(100000) unless queue_id
+
+            # Get the next limits event
+            break if @@cancel_limits
+            begin
+              type, data = get_limits_event(queue_id, true)
+            rescue ThreadError
+              break if @@cancel_limits
+              break if @@limits_sleeper.sleep(0.5)
+              next
+            end
+
+            break if @@cancel_limits
+
+            # Display limits state changes
+            if type == :LIMITS_CHANGE
+              target_name = data[0]
+              packet_name = data[1]
+              item_name = data[2]
+              old_limits_state = data[3]
+              new_limits_state = data[4]
+
+              if old_limits_state == nil # Changing from nil
+                if (new_limits_state != :GREEN) &&
+                  (new_limits_state != :GREEN_LOW) &&
+                  (new_limits_state != :GREEN_HIGH) &&
+                  (new_limits_state != :BLUE)
+                  msg = "#{target_name} #{packet_name} #{item_name} is #{new_limits_state.to_s}"
+                  case new_limits_state
+                  when :YELLOW, :YELLOW_LOW, :YELLOW_HIGH
+                    scriptrunner_puts "<Y>#{msg}"
+                  when :RED, :RED_LOW, :RED_HIGH
+                    scriptrunner_puts "<R>#{msg}"
+                  else
+                    # Print nothing
+                  end
+                  handle_output_io()
+                end
+              else # changing from a color
+                msg = "#{target_name} #{packet_name} #{item_name} is #{new_limits_state.to_s}"
+                case new_limits_state
+                when :BLUE
+                  scriptrunner_puts "<B>#{msg}"
+                when :GREEN, :GREEN_LOW, :GREEN_HIGH
+                  scriptrunner_puts "<G>#{msg}"
+                when :YELLOW, :YELLOW_LOW, :YELLOW_HIGH
+                  scriptrunner_puts "<Y>#{msg}"
+                when :RED, :RED_LOW, :RED_HIGH
+                  scriptrunner_puts "<R>#{msg}"
+                else
+                  # Print nothing
+                end
+                break if @@cancel_limits
+                handle_output_io()
+                break if @@cancel_limits
+              end
+
+              if @@pause_on_red && (new_limits_state == :RED ||
+                                    new_limits_state == :RED_LOW ||
+                                    new_limits_state == :RED_HIGH)
+                break if @@cancel_limits
+                pause()
+                break if @@cancel_limits
+              end
+            end
+
+          rescue DRb::DRbConnError
+            queue_id = nil
+            break if @@cancel_limits
+            break if @@limits_sleeper.sleep(1)
+          end
+
+        end # loop
+      rescue => error
+        Qt.execute_in_main_thread(true) do
+          ExceptionDialog.new(self, error, "Limits Monitor Thread")
+        end
+      end
+    ensure
+      begin
+        unsubscribe_limits_events(queue_id) if queue_id
+      rescue
+        # Oh Well
+      end
+    end
+
+  end # class ScriptRunnerFrame
+
+end # module Cosmos