npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/mol-repr/shape/loci/distance.d.ts CHANGED Viewed

@@ -35,7 +35,7 @@ export declare const DistanceParams: {
     fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     lineSizeAttenuation: PD.BooleanParam;
     linesColor: PD.Color;
     linesSize: PD.Numeric;

package/lib/mol-repr/shape/loci/distance.js CHANGED Viewed

@@ -50,7 +50,7 @@ function setDistanceState(pair, state) {
 }
 var tmpState = getDistanceState();
 function getDistanceName(data, unitLabel) {
-    return data.pairs.length === 1 ? "Distance " + distanceLabel(data.pairs[0], { unitLabel: unitLabel, measureOnly: true }) : data.pairs.length + " Distances";
+    return data.pairs.length === 1 ? "Distance ".concat(distanceLabel(data.pairs[0], { unitLabel: unitLabel, measureOnly: true })) : "".concat(data.pairs.length, " Distances");
 }
 //
 function buildLines(data, props, lines) {
@@ -73,7 +73,7 @@ function buildText(data, props, text) {
     for (var i = 0, il = data.pairs.length; i < il; ++i) {
         setDistanceState(data.pairs[i], tmpState);
         var center = tmpState.center, distance = tmpState.distance, sphereA = tmpState.sphereA, sphereB = tmpState.sphereB;
-        var label = props.customText || distance.toFixed(2) + " " + props.unitLabel;
+        var label = props.customText || "".concat(distance.toFixed(2), " ").concat(props.unitLabel);
         var radius = Math.max(2, sphereA.radius, sphereB.radius);
         var scale = radius / 2;
         builder.add(label, center[0], center[1], center[2], 1, scale, i);

package/lib/mol-repr/shape/loci/distance.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"distance.js","sourceRoot":"","sources":["../../../../src/mol-repr/shape/loci/distance.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,yBAAyB,CAAC;AAE/C,OAAO,EAAE,KAAK,EAAE,MAAM,uCAAuC,CAAC;AAC9D,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,UAAU,EAAE,MAAM,+BAA+B,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AACxD,OAAO,EAAE,cAAc,EAAqD,MAAM,sBAAsB,CAAC;AACzG,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAC;AACjD,OAAO,EAAE,YAAY,EAAE,MAAM,+CAA+C,CAAC;AAC7E,OAAO,EAAE,WAAW,EAAE,MAAM,6CAA6C,CAAC;AAC1E,OAAO,EAAE,IAAI,EAAE,MAAM,kCAAkC,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,iCAAiC,CAAC;AAC9E,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAC/C,OAAO,EAAE,QAAQ,EAAE,MAAM,4BAA4B,CAAC;AAMtD,IAAM,YAAY,GAAG;IACjB,SAAS,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,EAAE,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC;CACtD,CAAC;AAEF,IAAM,UAAU,kCACT,KAAK,CAAC,MAAM,GACZ,YAAY,KACf,mBAAmB,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EACrC,UAAU,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,UAAU,EAAE,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,EAClE,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAC/D,UAAU,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GACnE,CAAC;AAGF,IAAM,UAAU,yBACT,mBAAmB,GACnB,YAAY,CAClB,CAAC;AAGF,IAAM,eAAe,GAAG;IACpB,OAAO,EAAE,UAAC,GAA0B,EAAE,SAA+D,IAAK,OAAA,mBAAmB,CAAC,aAAa,EAAE,KAAK,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,uBAAM,CAAC,KAAE,aAAa,EAAE,aAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,CAAC,EAA5H,CAA4H;IACtO,MAAM,EAAE,UAAC,GAA0B,EAAE,SAA+D,IAAK,OAAA,mBAAmB,CAAC,YAAY,EAAE,IAAI,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,uBAAM,CAAC,KAAE,aAAa,EAAE,YAAY,CAAC,IAAI,IAAG,EAA5C,CAA4C,EAAE,CAAC,EAAjH,CAAiH;CAC7N,CAAC;AAEF,MAAM,CAAC,IAAM,cAAc,kCACpB,UAAU,GACV,UAAU,KACb,OAAO,EAAE,EAAE,CAAC,WAAW,CAAC,CAAC,OAAO,EAAE,MAAM,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,eAAe,CAAC,CAAC,GAClF,CAAC;AAIF,EAAE;AAEF,SAAS,gBAAgB;IACrB,OAAO;QACH,OAAO,EAAE,QAAQ,EAAE;QACnB,OAAO,EAAE,QAAQ,EAAE;QAEnB,MAAM,EAAE,IAAI,EAAE;QACd,QAAQ,EAAE,CAAC;KACd,CAAC;AACN,CAAC;AAGD,SAAS,gBAAgB,CAAC,IAAoB,EAAE,KAAoB;IACxD,IAAA,OAAO,GAAsB,KAAK,QAA3B,EAAE,OAAO,GAAa,KAAK,QAAlB,EAAE,MAAM,GAAK,KAAK,OAAV,CAAW;IAErC,IAAA,KAAiB,IAAI,CAAC,IAAI,EAAzB,KAAK,QAAA,EAAE,KAAK,QAAa,CAAC;IACjC,IAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;IACvC,IAAI,CAAC,iBAAiB,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;IAEvC,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IACjD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,GAAG,CAAC,CAAC;IAChC,KAAK,CAAC,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;IAE/D,OAAO,KAAK,CAAC;AACjB,CAAC;AAED,IAAM,QAAQ,GAAG,gBAAgB,EAAE,CAAC;AAEpC,SAAS,eAAe,CAAC,IAAkB,EAAE,SAAiB;IAC1D,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,mBAAY,aAAa,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,SAAS,WAAA,EAAE,WAAW,EAAE,IAAI,EAAE,CAAC,CAAE,CAAC,CAAC,CAAC,UAAG,IAAI,CAAC,KAAK,CAAC,MAAM,eAAY,CAAC;AACrJ,CAAC;AAED,EAAE;AAEF,SAAS,UAAU,CAAC,IAAkB,EAAE,KAAoB,EAAE,KAAa;IACvE,IAAM,OAAO,GAAG,YAAY,CAAC,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;IACpD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACjD,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;QAC1C,OAAO,CAAC,oBAAoB,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC;KACvG;IACD,OAAO,OAAO,CAAC,QAAQ,EAAE,CAAC;AAC9B,CAAC;AAED,SAAS,aAAa,CAAC,GAAmB,EAAE,IAAkB,EAAE,KAAoB,EAAE,KAAoB;IACtG,IAAM,KAAK,GAAG,UAAU,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC/D,IAAM,IAAI,GAAG,eAAe,CAAC,IAAI,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC;IACpD,IAAM,QAAQ,GAAG,UAAC,OAAe,IAAK,OAAA,aAAa,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,KAAK,CAAC,EAAzC,CAAyC,CAAC;IAChF,OAAO,KAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,cAAM,OAAA,KAAK,CAAC,UAAU,EAAhB,CAAgB,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,QAAQ,CAAC,CAAC;AACpG,CAAC;AAED,EAAE;AAEF,SAAS,SAAS,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAW;IACpE,IAAM,OAAO,GAAG,WAAW,CAAC,MAAM,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,CAAC,CAAC;IACzD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACjD,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;QAClC,IAAA,MAAM,GAAiC,QAAQ,OAAzC,EAAE,QAAQ,GAAuB,QAAQ,SAA/B,EAAE,OAAO,GAAc,QAAQ,QAAtB,EAAE,OAAO,GAAK,QAAQ,QAAb,CAAc;QACxD,IAAM,KAAK,GAAG,KAAK,CAAC,UAAU,IAAI,UAAG,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,cAAI,KAAK,CAAC,SAAS,CAAE,CAAC;QAC9E,IAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;QAC3D,IAAM,KAAK,GAAG,MAAM,GAAG,CAAC,CAAC;QACzB,OAAO,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC;KACpE;IACD,OAAO,OAAO,CAAC,OAAO,EAAE,CAAC;AAC7B,CAAC;AAED,SAAS,YAAY,CAAC,GAAmB,EAAE,IAAkB,EAAE,KAAoB,EAAE,KAAmB;IACpG,IAAM,IAAI,GAAG,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,K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package/lib/mol-repr/shape/loci/label.d.ts CHANGED Viewed

@@ -38,7 +38,7 @@ export declare const LabelParams: {
     fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type LabelParams = typeof LabelParams;
 export declare type LabelProps = PD.Values<LabelParams>;

package/lib/mol-repr/shape/loci/label.js CHANGED Viewed

@@ -26,7 +26,7 @@ function label(info, condensed) {
     return info.label || lociLabel(info.loci, { hidePrefix: true, htmlStyling: false, condensed: condensed });
 }
 function getLabelName(data) {
-    return data.infos.length === 1 ? label(data.infos[0]) : data.infos.length + " Labels";
+    return data.infos.length === 1 ? label(data.infos[0]) : "".concat(data.infos.length, " Labels");
 }
 //
 function buildText(data, props, text) {

package/lib/mol-repr/shape/loci/label.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"label.js","sourceRoot":"","sources":["../../../../src/mol-repr/shape/loci/label.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,yBAAyB,CAAC;AAE/C,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AACxD,OAAO,EAAE,cAAc,EAAqD,MAAM,sBAAsB,CAAC;AACzG,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAC;AACjD,OAAO,EAAE,WAAW,EAAE,MAAM,6CAA6C,CAAC;AAC1E,OAAO,EAAE,QAAQ,EAAE,MAAM,4BAA4B,CAAC;AACtD,OAAO,EAAE,SAAS,EAAE,MAAM,0BAA0B,CAAC;AACrD,OAAO,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAM/C,IAAM,UAAU,yBACT,mBAAmB,KACtB,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,GACzD,CAAC;AAGF,IAAM,YAAY,GAAG;IACjB,MAAM,EAAE,UAAC,GAA0B,EAAE,SAA4D,IAAK,OAAA,mBAAmB,CAAC,YAAY,EAAE,IAAI,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,uBAAM,CAAC,KAAE,QAAQ,EAAE,KAAK,IAAG,EAA3B,CAA2B,EAAE,CAAC,EAAhG,CAAgG;CACzM,CAAC;AAEF,MAAM,CAAC,IAAM,WAAW,yBACjB,UAAU,KACb,aAAa,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAC/B,OAAO,EAAE,EAAE,CAAC,WAAW,CAAC,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,YAAY,CAAC,CAAC,GACtE,CAAC;AAKF,EAAE;AAEF,IAAM,SAAS,GAAG,QAAQ,EAAE,CAAC;AAE7B,SAAS,KAAK,CAAC,IAAoC,EAAE,SAAiB;IAAjB,0BAAA,EAAA,iBAAiB;IAClE,OAAO,IAAI,CAAC,KAAK,IAAI,SAAS,CAAC,IAAI,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,WAAW,EAAE,KAAK,EAAE,SAAS,WAAA,EAAE,CAAC,CAAC;AACnG,CAAC;AAED,SAAS,YAAY,CAAC,IAAe;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,UAAG,IAAI,CAAC,KAAK,CAAC,MAAM,YAAS,CAAC;AAC1F,CAAC;AAED,EAAE;AAEF,SAAS,SAAS,CAAC,IAAe,EAAE,KAAiB,EAAE,IAAW;IAC9D,IAAM,OAAO,GAAG,WAAW,CAAC,MAAM,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,CAAC,CAAC;IACzD,IAAM,WAAW,GAAG,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,CAAC;IAC5C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACjD,IAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC3B,IAAM,MAAM,GAAG,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;QAC5D,IAAI,CAAC,MAAM;YAAE,SAAS;QACd,IAAA,MAAM,GAAa,MAAM,OAAnB,EAAE,MAAM,GAAK,MAAM,OAAX,CAAY;QAClC,IAAM,MAAI,GAAG,WAAW,IAAI,KAAK,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;QAC9C,OAAO,CAAC,GAAG,CAAC,MAAI,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KAChJ;IACD,OAAO,OAAO,CAAC,OAAO,EAAE,CAAC;AAC7B,CAAC;AAED,SAAS,YAAY,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAiB,EAAE,KAAmB;IAC9F,IAAM,IAAI,GAAG,SAAS,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC7D,IAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IAChC,IAAM,WAAW,GAAG,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,CAAC;IAC5C,IAAM,QAAQ,GAAG,WAAW;QACxB,CAAC,CAAC,UAAU,OAAe;YACvB,OAAO,WAAW,CAAC;QACvB,CAAC,CAAC,CAAC,CAAC,UAAU,OAAe;QACzB,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;IACtC,CAAC,CAAC;IACN,OAAO,KAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,cAAM,OAAA,KAAK,CAAC,QAAQ,EAAd,CAAc,EAAE,QAAQ,CAAC,CAAC;AACjG,CAAC;AAKD,MAAM,UAAU,mBAAmB,CAAC,GAA0B,EAAE,SAA6D;IACzH,OAAO,cAAc,CAAC,WAAW,CAAC,OAAO,EAAE,GAAG,EAAE,SAAS,EAAE,cAAc,CAAC,YAAY,EAAE,YAAqE,CAAC,CAAC;AACnK,CAAC"}

package/lib/mol-repr/shape/loci/orientation.d.ts CHANGED Viewed

@@ -10,7 +10,7 @@ export interface OrientationData {
     locis: StructureElement.Loci[];
 }
 export declare const OrientationParams: {
-    visuals: PD.MultiSelect<"axes" | "ellipsoid" | "box">;
+    visuals: PD.MultiSelect<"box" | "axes" | "ellipsoid">;
     color: PD.Color;
     scaleFactor: PD.Numeric;
     radiusScale: PD.Numeric;
@@ -20,7 +20,7 @@ export declare const OrientationParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type OrientationParams = typeof OrientationParams;
 export declare type OrientationProps = PD.Values<OrientationParams>;

package/lib/mol-repr/shape/loci/orientation.js CHANGED Viewed

@@ -36,7 +36,7 @@ export var OrientationParams = __assign(__assign(__assign(__assign({}, AxesParam
 //
 function getAxesName(locis) {
     var label = structureElementLociLabelMany(locis, { countsOnly: true });
-    return "Principal Axes of " + label;
+    return "Principal Axes of ".concat(label);
 }
 function buildAxesMesh(data, props, mesh) {
     var state = MeshBuilder.createState(256, 128, mesh);
@@ -54,7 +54,7 @@ function getAxesShape(ctx, data, props, shape) {
 //
 function getBoxName(locis) {
     var label = structureElementLociLabelMany(locis, { countsOnly: true });
-    return "Oriented Box of " + label;
+    return "Oriented Box of ".concat(label);
 }
 function buildBoxMesh(data, props, mesh) {
     var state = MeshBuilder.createState(256, 128, mesh);
@@ -72,7 +72,7 @@ function getBoxShape(ctx, data, props, shape) {
 //
 function getEllipsoidName(locis) {
     var label = structureElementLociLabelMany(locis, { countsOnly: true });
-    return "Oriented Ellipsoid of " + label;
+    return "Oriented Ellipsoid of ".concat(label);
 }
 function buildEllipsoidMesh(data, props, mesh) {
     var state = MeshBuilder.createState(256, 128, mesh);

package/lib/mol-repr/shape/loci/orientation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-repr/shape/loci/plane.d.ts CHANGED Viewed

@@ -19,7 +19,7 @@ export declare const PlaneParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PlaneParams = typeof PlaneParams;
 export declare type PlaneProps = PD.Values<PlaneParams>;

package/lib/mol-repr/shape/loci/plane.js CHANGED Viewed

@@ -25,7 +25,7 @@ export var PlaneParams = __assign(__assign({}, _PlaneParams), { visuals: PD.Mult
 //
 function getPlaneName(locis) {
     var label = structureElementLociLabelMany(locis, { countsOnly: true });
-    return "Best Fit Plane of " + label;
+    return "Best Fit Plane of ".concat(label);
 }
 var tmpMat = Mat4();
 var tmpV = Vec3();

package/lib/mol-repr/shape/loci/plane.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"plane.js","sourceRoot":"","sources":["../../../../src/mol-repr/shape/loci/plane.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,UAAU,EAAE,MAAM,+BAA+B,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AACxD,OAAO,EAAE,cAAc,EAAqD,MAAM,sBAAsB,CAAC;AACzG,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAC;AACjD,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,WAAW,EAAE,MAAM,6CAA6C,CAAC;AAC1E,OAAO,EAAE,6BAA6B,EAAE,MAAM,0BAA0B,CAAC;AACzE,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,kCAAkC,CAAC;AAC9D,OAAO,EAAE,aAAa,EAAE,MAAM,iCAAiC,CAAC;AAChE,OAAO,EAAE,KAAK,EAAE,MAAM,kCAAkC,CAAC;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,OAAO,EAAE,MAAM,EAAE,MAAM,4BAA4B,CAAC;AAMpD,IAAM,YAAY,yBACX,IAAI,CAAC,MAAM,KACd,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,EAClC,WAAW,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,GAC/D,CAAC;AAGF,IAAM,YAAY,GAAG;IACjB,OAAO,EAAE,UAAC,GAA0B,EAAE,SAA8D,IAAK,OAAA,mBAAmB,CAAC,aAAa,EAAE,IAAI,CAAC,KAAK,CAAC,EAA9C,CAA8C;CAC1J,CAAC;AAEF,MAAM,CAAC,IAAM,WAAW,yBACjB,YAAY,KACf,OAAO,EAAE,EAAE,CAAC,WAAW,CAAC,CAAC,OAAO,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,YAAY,CAAC,CAAC,GACvE,CAAC;AAIF,EAAE;AAEF,SAAS,YAAY,CAAC,KAA8B;IAChD,IAAM,KAAK,GAAG,6BAA6B,CAAC,KAAK,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IACzE,OAAO,4BAAqB,KAAK,CAAE,CAAC;AACxC,CAAC;AAED,IAAM,MAAM,GAAG,IAAI,EAAE,CAAC;AACtB,IAAM,IAAI,GAAG,IAAI,EAAE,CAAC;AACpB,SAAS,cAAc,CAAC,IAAe,EAAE,KAAiB,EAAE,IAAW;IACnE,IAAM,KAAK,GAAG,WAAW,CAAC,WAAW,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;IACtD,IAAM,aAAa,GAAG,gBAAgB,CAAC,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC7E,IAAM,IAAI,GAAG,aAAa,CAAC,OAAO,CAAC;IACnC,IAAM,KAAK,GAAG,KAAK,EAAE,CAAC;IAEtB,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IACvC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IACpD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;IACpD,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,WAAW,CAAC,CAAC;IACvD,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;IAEzC,KAAK,CAAC,YAAY,GAAG,CAAC,CAAC;IACvB,WAAW,CAAC,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC/C,WAAW,CAAC,mBAAmB,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IACtD,OAAO,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;AACtC,CAAC;AAED,SAAS,aAAa,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAiB,EAAE,KAAmB;IAC/F,IAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IAClE,IAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACtC,OAAO,KAAK,CAAC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,CAAC,EAAD,CAAC,EAAE,cAAM,OAAA,IAAI,EAAJ,CAAI,CAAC,CAAC;AAClF,CAAC;AAKD,MAAM,UAAU,mBAAmB,CAAC,GAA0B,EAAE,SAA6D;IACzH,IAAM,IAAI,GAAG,cAAc,CAAC,WAAW,CAAC,OAAO,EAAE,GAAG,EAAE,SAAS,EAAE,cAAc,CAAC,YAAY,EAAE,YAAqE,CAAC,CAAC;IACrK,IAAI,CAAC,QAAQ,CAAC,EAAE,aAAa,EAAE,aAAa,CAAC,YAAY,EAAE,CAAC,CAAC;IAC7D,OAAO,IAAI,CAAC;AAChB,CAAC"}

package/lib/mol-repr/shape/model/unitcell.d.ts CHANGED Viewed

@@ -14,7 +14,7 @@ interface UnitcellData {
 export declare const UnitcellParams: {
     cellColor: PD.Color;
     cellScale: PD.Numeric;
-    ref: PD.Select<"model" | "origin">;
+    ref: PD.Select<"origin" | "model">;
     attachment: PD.Select<"center" | "corner">;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -22,7 +22,7 @@ export declare const UnitcellParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type UnitcellParams = typeof UnitcellParams;
 export declare type UnitcellProps = PD.Values<UnitcellParams>;

package/lib/mol-repr/shape/representation.js CHANGED Viewed

@@ -31,6 +31,7 @@ export function ShapeRepresentation(getShape, geometryUtils, builder) {
     var renderObjects = [];
     var _renderObject;
     var _shape;
+    var geometryVersion = -1;
     var _theme = Theme.createEmpty();
     var currentProps = PD.getDefaultValues(geometryUtils.Params); // TODO avoid casting
     var currentParams;
@@ -151,6 +152,9 @@ export function ShapeRepresentation(getShape, geometryUtils, builder) {
                             geometryUtils.updateRenderableState(_renderObject.state, newProps);
                         }
                         currentProps = newProps;
+                        if (updateState.createGeometry || updateState.createNew) {
+                            geometryVersion += 1;
+                        }
                         // increment version
                         updated.next(version++);
                         return [2 /*return*/];
@@ -174,6 +178,7 @@ export function ShapeRepresentation(getShape, geometryUtils, builder) {
         get state() { return _state; },
         get theme() { return _theme; },
         renderObjects: renderObjects,
+        get geometryVersion() { return geometryVersion; },
         updated: updated,
         createOrUpdate: createOrUpdate,
         getLoci: function (pickingId) {

package/lib/mol-repr/shape/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-repr/structure/complex-representation.js CHANGED Viewed

@@ -7,6 +7,7 @@
 import { __awaiter, __generator } from "tslib";
 import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { StructureRepresentationStateBuilder } from './representation';
+import { Representation } from '../representation';
 import { Structure, StructureElement, Bond } from '../../mol-model/structure';
 import { Subject } from 'rxjs';
 import { getNextMaterialId } from '../../mol-gl/render-object';
@@ -21,6 +22,7 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
     var version = 0;
     var webgl = ctx.webgl;
     var updated = new Subject();
+    var geometryState = new Representation.GeometryState();
     var materialId = getNextMaterialId();
     var renderObjects = [];
     var _state = StructureRepresentationStateBuilder.create();
@@ -66,10 +68,14 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
                             setState(_state); // current state for new visual
                         // update list of renderObjects
                         renderObjects.length = 0;
-                        if (visual && visual.renderObject)
+                        if (visual && visual.renderObject) {
                             renderObjects.push(visual.renderObject);
+                            geometryState.add(visual.renderObject.id, visual.geometryVersion);
+                        }
+                        geometryState.snapshot();
                         // increment version
-                        updated.next(version++);
+                        version += 1;
+                        updated.next(version);
                         return [2 /*return*/];
                 }
             });
@@ -115,12 +121,12 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
         if (state.overpaint !== undefined && visual) {
             // Remap loci from equivalent structure to the current structure
             var remappedOverpaint = Overpaint.remap(state.overpaint, _structure);
-            visual.setOverpaint(remappedOverpaint);
+            visual.setOverpaint(remappedOverpaint, webgl);
         }
         if (state.transparency !== undefined && visual) {
             // Remap loci from equivalent structure to the current structure
             var remappedTransparency = Transparency.remap(state.transparency, _structure);
-            visual.setTransparency(remappedTransparency);
+            visual.setTransparency(remappedTransparency, webgl);
         }
         if (state.clipping !== undefined && visual) {
             // Remap loci from equivalent structure to the current structure
@@ -152,6 +158,7 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
         get params() { return _params; },
         get state() { return _state; },
         get theme() { return _theme; },
+        get geometryVersion() { return geometryState.version; },
         renderObjects: renderObjects,
         updated: updated,
         createOrUpdate: createOrUpdate,

package/lib/mol-repr/structure/complex-representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-repr/structure/complex-visual.d.ts CHANGED Viewed

@@ -40,7 +40,7 @@ interface ComplexVisualGeometryBuilder<P extends StructureParams, G extends Geom
 }
 export declare function ComplexVisual<G extends Geometry, P extends StructureParams & Geometry.Params<G>>(builder: ComplexVisualGeometryBuilder<P, G>, materialId: number): ComplexVisual<P>;
 export declare const ComplexMeshParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -48,14 +48,14 @@ export declare const ComplexMeshParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexMeshParams = typeof ComplexMeshParams;
 export interface ComplexMeshVisualBuilder<P extends ComplexMeshParams> extends ComplexVisualBuilder<P, Mesh> {
 }
 export declare function ComplexMeshVisual<P extends ComplexMeshParams>(builder: ComplexMeshVisualBuilder<P>, materialId: number): ComplexVisual<P>;
 export declare const ComplexCylindersParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     sizeAspectRatio: PD.Numeric;
@@ -63,26 +63,26 @@ export declare const ComplexCylindersParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexCylindersParams = typeof ComplexCylindersParams;
 export interface ComplexCylindersVisualBuilder<P extends ComplexCylindersParams> extends ComplexVisualBuilder<P, Cylinders> {
 }
 export declare function ComplexCylindersVisual<P extends ComplexCylindersParams>(builder: ComplexCylindersVisualBuilder<P>, materialId: number): ComplexVisual<P>;
 export declare const ComplexLinesParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexLinesParams = typeof ComplexLinesParams;
 export interface ComplexLinesVisualBuilder<P extends ComplexLinesParams> extends ComplexVisualBuilder<P, Lines> {
 }
 export declare function ComplexLinesVisual<P extends ComplexLinesParams>(builder: ComplexLinesVisualBuilder<P>, materialId: number): ComplexVisual<P>;
 export declare const ComplexTextParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     borderWidth: PD.Numeric;
@@ -104,14 +104,14 @@ export declare const ComplexTextParams: {
     fontVariant: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexTextParams = typeof ComplexTextParams;
 export interface ComplexTextVisualBuilder<P extends ComplexTextParams> extends ComplexVisualBuilder<P, Text> {
 }
 export declare function ComplexTextVisual<P extends ComplexTextParams>(builder: ComplexTextVisualBuilder<P>, materialId: number): ComplexVisual<P>;
 export declare const ComplexDirectVolumeParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -137,14 +137,14 @@ export declare const ComplexDirectVolumeParams: {
     stepsPerCell: PD.Numeric;
     jumpLength: PD.Numeric;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexDirectVolumeParams = typeof ComplexDirectVolumeParams;
 export interface ComplexDirectVolumeVisualBuilder<P extends ComplexDirectVolumeParams> extends ComplexVisualBuilder<P, DirectVolume> {
 }
 export declare function ComplexDirectVolumeVisual<P extends ComplexDirectVolumeParams>(builder: ComplexDirectVolumeVisualBuilder<P>, materialId: number): ComplexVisual<P>;
 export declare const ComplexTextureMeshParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -152,7 +152,7 @@ export declare const ComplexTextureMeshParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ComplexTextureMeshParams = typeof ComplexTextureMeshParams;
 export interface ComplexTextureMeshVisualBuilder<P extends ComplexTextureMeshParams> extends ComplexVisualBuilder<P, TextureMesh> {

package/lib/mol-repr/structure/complex-visual.js CHANGED Viewed

@@ -48,6 +48,7 @@ export function ComplexVisual(builder, materialId) {
     var currentTheme = Theme.createEmpty();
     var currentStructure;
     var geometry;
+    var geometryVersion = -1;
     var locationIt;
     var positionIt;
     function prepareUpdate(theme, props, structure) {
@@ -138,8 +139,10 @@ export function ComplexVisual(builder, materialId) {
         currentProps = newProps;
         currentTheme = newTheme;
         currentStructure = newStructure;
-        if (newGeometry)
+        if (newGeometry) {
             geometry = newGeometry;
+            geometryVersion += 1;
+        }
     }
     function lociIsSuperset(loci) {
         if (isEveryLoci(loci))
@@ -168,6 +171,7 @@ export function ComplexVisual(builder, materialId) {
     return {
         get groupCount() { return locationIt ? locationIt.count : 0; },
         get renderObject() { return locationIt && locationIt.count ? renderObject : undefined; },
+        get geometryVersion() { return geometryVersion; },
         createOrUpdate: function (ctx, theme, props, structure) {
             if (props === void 0) { props = {}; }
             prepareUpdate(theme, props, structure || currentStructure);
@@ -207,11 +211,13 @@ export function ComplexVisual(builder, materialId) {
         setTransform: function (matrix, instanceMatrices) {
             Visual.setTransform(renderObject, matrix, instanceMatrices);
         },
-        setOverpaint: function (overpaint) {
-            Visual.setOverpaint(renderObject, overpaint, lociApply, true);
+        setOverpaint: function (overpaint, webgl) {
+            var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
+            Visual.setOverpaint(renderObject, overpaint, lociApply, true, smoothing);
         },
-        setTransparency: function (transparency) {
-            Visual.setTransparency(renderObject, transparency, lociApply, true);
+        setTransparency: function (transparency, webgl) {
+            var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
+            Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
         },
         setClipping: function (clipping) {
             Visual.setClipping(renderObject, clipping, lociApply, true);

package/lib/mol-repr/structure/complex-visual.js.map CHANGED Viewed

	@@ -1 +1 @@
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