molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1699) hide show
  1. package/build/viewer/molstar.css +1 -2
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/docking-viewer/index.js +1 -1
  4. package/lib/apps/docking-viewer/index.js.map +1 -1
  5. package/lib/apps/docking-viewer/viewport.d.ts +2 -2
  6. package/lib/apps/viewer/index.d.ts +1 -1
  7. package/lib/apps/viewer/index.js +3 -3
  8. package/lib/apps/viewer/index.js.map +1 -1
  9. package/lib/cli/chem-comp-dict/create-ions.js +1 -1
  10. package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
  11. package/lib/cli/chem-comp-dict/create-table.js +3 -3
  12. package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
  13. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  14. package/lib/cli/chem-comp-dict/util.js +2 -2
  15. package/lib/cli/chem-comp-dict/util.js.map +1 -1
  16. package/lib/cli/cif2bcif/converter.js +2 -2
  17. package/lib/cli/cif2bcif/converter.js.map +1 -1
  18. package/lib/cli/cifschema/index.js +12 -12
  19. package/lib/cli/cifschema/index.js.map +1 -1
  20. package/lib/cli/cifschema/util/cif-dic.js +20 -19
  21. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  22. package/lib/cli/cifschema/util/generate.js +21 -21
  23. package/lib/cli/cifschema/util/generate.js.map +1 -1
  24. package/lib/cli/cifschema/util/schema.js +1 -1
  25. package/lib/cli/cifschema/util/schema.js.map +1 -1
  26. package/lib/cli/lipid-params/index.js +3 -3
  27. package/lib/cli/lipid-params/index.js.map +1 -1
  28. package/lib/cli/state-docs/index.js +4 -4
  29. package/lib/cli/state-docs/index.js.map +1 -1
  30. package/lib/cli/state-docs/pd-to-md.js +10 -10
  31. package/lib/cli/state-docs/pd-to-md.js.map +1 -1
  32. package/lib/cli/structure-info/model.js +18 -18
  33. package/lib/cli/structure-info/model.js.map +1 -1
  34. package/lib/cli/structure-info/volume.js +1 -1
  35. package/lib/cli/structure-info/volume.js.map +1 -1
  36. package/lib/commonjs/apps/docking-viewer/index.js +1 -1
  37. package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
  38. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  39. package/lib/commonjs/apps/viewer/index.d.ts +7 -7
  40. package/lib/commonjs/apps/viewer/index.js +3 -3
  41. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  42. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
  43. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
  44. package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
  45. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
  46. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  47. package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
  48. package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
  49. package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
  50. package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
  51. package/lib/commonjs/cli/cifschema/index.js +12 -12
  52. package/lib/commonjs/cli/cifschema/index.js.map +1 -1
  53. package/lib/commonjs/cli/cifschema/util/cif-dic.js +20 -19
  54. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  55. package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
  56. package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
  57. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  58. package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
  59. package/lib/commonjs/cli/lipid-params/index.js +3 -3
  60. package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
  61. package/lib/commonjs/cli/state-docs/index.js +4 -4
  62. package/lib/commonjs/cli/state-docs/index.js.map +1 -1
  63. package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
  64. package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
  65. package/lib/commonjs/cli/structure-info/model.js +18 -18
  66. package/lib/commonjs/cli/structure-info/model.js.map +1 -1
  67. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  68. package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
  69. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  70. package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
  71. package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
  72. package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
  73. package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
  74. package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
  75. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
  76. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
  77. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
  78. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
  79. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  80. package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
  81. package/lib/commonjs/examples/task.js +6 -6
  82. package/lib/commonjs/examples/task.js.map +1 -1
  83. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
  84. package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
  85. package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
  86. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  87. package/lib/commonjs/extensions/anvil/representation.js +1 -1
  88. package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
  89. package/lib/commonjs/extensions/cellpack/model.js +15 -15
  90. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  91. package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
  92. package/lib/commonjs/extensions/cellpack/state.js +5 -5
  93. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  94. package/lib/commonjs/extensions/cellpack/util.js +4 -4
  95. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  96. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  97. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
  98. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
  99. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
  100. package/lib/commonjs/extensions/g3d/data.js +2 -2
  101. package/lib/commonjs/extensions/g3d/data.js.map +1 -1
  102. package/lib/commonjs/extensions/g3d/model.js +2 -2
  103. package/lib/commonjs/extensions/g3d/model.js.map +1 -1
  104. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  105. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  106. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -0
  107. package/lib/commonjs/extensions/geo-export/glb-exporter.js +28 -18
  108. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  109. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
  110. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
  111. package/lib/commonjs/extensions/geo-export/mesh-exporter.js.map +1 -1
  112. package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
  113. package/lib/commonjs/extensions/geo-export/obj-exporter.js +27 -18
  114. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  115. package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
  116. package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
  117. package/lib/commonjs/extensions/geo-export/ui.js +24 -20
  118. package/lib/commonjs/extensions/geo-export/ui.js.map +1 -1
  119. package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +1 -0
  120. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +31 -21
  121. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  122. package/lib/commonjs/extensions/mp4-export/controls.js +2 -2
  123. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  124. package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
  125. package/lib/commonjs/extensions/mp4-export/ui.js.map +1 -1
  126. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  127. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
  128. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  129. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
  130. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
  131. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
  132. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
  133. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
  134. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
  135. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
  136. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
  137. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  138. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
  139. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
  140. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
  141. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  142. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
  143. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
  144. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
  145. package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
  146. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
  147. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  148. package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
  149. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  150. package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
  151. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  152. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
  153. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  154. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
  155. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
  156. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
  157. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  158. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  159. package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
  160. package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
  161. package/lib/commonjs/mol-canvas3d/util.js +1 -1
  162. package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
  163. package/lib/commonjs/mol-data/db/table.js +1 -1
  164. package/lib/commonjs/mol-data/db/table.js.map +1 -1
  165. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
  166. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
  167. package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
  168. package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
  169. package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
  170. package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
  171. package/lib/commonjs/mol-data/int/tuple.js +1 -1
  172. package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
  173. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
  174. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
  175. package/lib/commonjs/mol-geo/geometry/base.d.ts +16 -4
  176. package/lib/commonjs/mol-geo/geometry/base.js +37 -2
  177. package/lib/commonjs/mol-geo/geometry/base.js.map +1 -1
  178. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  179. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  180. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
  181. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
  182. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +18 -8
  183. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  184. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +9 -2
  185. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +154 -35
  186. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
  187. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  188. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  189. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  190. package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
  191. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
  192. package/lib/commonjs/mol-geo/geometry/overpaint-data.js.map +1 -1
  193. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
  194. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -2
  195. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  196. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
  197. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  198. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +7 -3
  199. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +162 -27
  200. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
  201. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +4 -2
  202. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -1
  203. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  204. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
  205. package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
  206. package/lib/commonjs/mol-geo/geometry/transparency-data.js.map +1 -1
  207. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  208. package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
  209. package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
  210. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  211. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +1 -1
  212. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  213. package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
  214. package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
  215. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
  216. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
  217. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  218. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
  219. package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
  220. package/lib/commonjs/mol-gl/compute/util.js +76 -21
  221. package/lib/commonjs/mol-gl/compute/util.js.map +1 -1
  222. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +8 -0
  223. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +8 -0
  224. package/lib/commonjs/mol-gl/renderable/image.d.ts +8 -0
  225. package/lib/commonjs/mol-gl/renderable/lines.d.ts +8 -0
  226. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +8 -0
  227. package/lib/commonjs/mol-gl/renderable/points.d.ts +8 -0
  228. package/lib/commonjs/mol-gl/renderable/schema.d.ts +16 -0
  229. package/lib/commonjs/mol-gl/renderable/schema.js +8 -0
  230. package/lib/commonjs/mol-gl/renderable/schema.js.map +1 -1
  231. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +8 -0
  232. package/lib/commonjs/mol-gl/renderable/text.d.ts +8 -0
  233. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +22 -13
  234. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  235. package/lib/commonjs/mol-gl/renderable/texture-mesh.js.map +1 -1
  236. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  237. package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
  238. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  239. package/lib/commonjs/mol-gl/renderer.js +3 -0
  240. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  241. package/lib/commonjs/mol-gl/scene.js +1 -1
  242. package/lib/commonjs/mol-gl/scene.js.map +1 -1
  243. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  244. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  245. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
  246. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  247. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  248. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  249. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  250. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  251. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
  252. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  253. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  254. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
  255. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  256. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  257. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
  258. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  259. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  260. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
  261. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  262. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  263. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  264. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  265. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  266. package/lib/commonjs/mol-gl/shader/mesh.vert.js.map +1 -1
  267. package/lib/commonjs/mol-gl/shader-code.js +8 -8
  268. package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
  269. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
  270. package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
  271. package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
  272. package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
  273. package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
  274. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  275. package/lib/commonjs/mol-gl/webgl/context.js +2 -2
  276. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  277. package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
  278. package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
  279. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  280. package/lib/commonjs/mol-gl/webgl/program.js +14 -12
  281. package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
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package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js CHANGED
@@ -151,7 +151,7 @@ exports.Vec2 = Vec2;
151
151
  }
152
152
  Vec2.areEqual = areEqual;
153
153
  function toString(a, precision) {
154
- return "[" + a[0].toPrecision(precision) + " " + a[1].toPrecision(precision) + "}]";
154
+ return "[".concat(a[0].toPrecision(precision), " ").concat(a[1].toPrecision(precision), "}]");
155
155
  }
156
156
  Vec2.toString = toString;
157
157
  })(Vec2 || (Vec2 = {}));
package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js CHANGED
@@ -557,7 +557,7 @@ exports.Vec3 = Vec3;
557
557
  }
558
558
  Vec3.triangleNormal = triangleNormal;
559
559
  function toString(a, precision) {
560
- return "[" + a[0].toPrecision(precision) + " " + a[1].toPrecision(precision) + " " + a[2].toPrecision(precision) + "]";
560
+ return "[".concat(a[0].toPrecision(precision), " ").concat(a[1].toPrecision(precision), " ").concat(a[2].toPrecision(precision), "]");
561
561
  }
562
562
  Vec3.toString = toString;
563
563
  Vec3.origin = create(0, 0, 0);
package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map CHANGED
@@ -1 +1 @@
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package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js CHANGED
@@ -213,7 +213,7 @@ exports.Vec4 = Vec4;
213
213
  }
214
214
  Vec4.equals = equals;
215
215
  function toString(a, precision) {
216
- return "[" + a[0].toPrecision(precision) + " " + a[1].toPrecision(precision) + " " + a[2].toPrecision(precision) + " " + a[3].toPrecision(precision) + "]";
216
+ return "[".concat(a[0].toPrecision(precision), " ").concat(a[1].toPrecision(precision), " ").concat(a[2].toPrecision(precision), " ").concat(a[3].toPrecision(precision), "]");
217
217
  }
218
218
  Vec4.toString = toString;
219
219
  })(Vec4 || (Vec4 = {}));
package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js.map CHANGED
@@ -1 +1 @@
1
- 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{"version":3,"file":"vec4.js","sourceRoot":"","sources":["../../../../../src/mol-math/linear-algebra/3d/vec4.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAiBH,mCAAmC;AAInC,SAAS,IAAI;IACT,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC;AACvB,CAAC;AA2NQ,oBAAI;AAzNb,WAAU,IAAI;IACV,SAAgB,IAAI;QAChB,qCAAqC;QACrC,IAAM,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAC3B,GAAG,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC;QACb,OAAO,GAAU,CAAC;IACtB,CAAC;IALe,SAAI,OAKnB,CAAA;IAED,SAAgB,KAAK,CAAC,CAAO;QACzB,IAAM,GAAG,GAAG,IAAI,EAAE,CAAC;QACnB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,OAAO,GAAG,CAAC;IACf,CAAC;IAPe,UAAK,QAOpB,CAAA;IAED,SAAgB,MAAM,CAAC,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS;QAC7D,IAAM,GAAG,GAAG,IAAI,EAAE,CAAC;QACnB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,OAAO,GAAG,CAAC;IACf,CAAC;IAPe,WAAM,SAOrB,CAAA;IAED,SAAgB,UAAU,CAAC,GAAS,EAAE,MAAgB;QAClD,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC1B,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC1B,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC1B,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC;QACvB,OAAO,GAAG,CAAC;IACf,CAAC;IANe,eAAU,aAMzB,CAAA;IAED,SAAgB,QAAQ,CAAC,MAAgB;QACrC,OAAO,UAAU,CAAC,IAAI,EAAE,EAAE,MAAM,CAAC,CAAC;IACtC,CAAC;IAFe,aAAQ,WAEvB,CAAA;IAED,SAAgB,MAAM,CAAC,CAAO;QAC1B,OAAO,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACpE,CAAC;IAFe,WAAM,SAErB,CAAA;IAED,SAAgB,OAAO,CAAC,CAAO,EAAE,GAAgB,EAAE,MAAc;QAC7D,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,OAAO,GAAG,CAAC;IACf,CAAC;IANe,YAAO,UAMtB,CAAA;IAED,SAAgB,SAAS,CAAC,CAAO,EAAE,KAAkB,EAAE,MAAc;QACjE,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,OAAO,CAAC,CAAC;IACb,CAAC;IANe,cAAS,YAMxB,CAAA;IAED,SAAgB,WAAW,CAAC,CAAO,EAAE,GAAgB,EAAE,MAAc;QACjE,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACvB,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3B,CAAC;IAJe,gBAAW,cAI1B,CAAA;IAED,SAAgB,aAAa,CAAC,CAAO,EAAE,KAAkB,EAAE,MAAc;QACrE,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACzB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACT,OAAO,CAAC,CAAC;IACb,CAAC;IANe,kBAAa,gBAM5B,CAAA;IAED,SAAgB,IAAI,CAAC,GAAS,EAAE,CAAO;QACnC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACd,OAAO,GAAG,CAAC;IACf,CAAC;IANe,SAAI,OAMnB,CAAA;IAED,SAAgB,GAAG,CAAC,GAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS,EAAE,CAAS;QACrE,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACX,OAAO,GAAG,CAAC;IACf,CAAC;IANe,QAAG,MAMlB,CAAA;IAED,SAAgB,GAAG,CAAC,GAAS,EAAE,CAAO,EAAE,CAAO;QAC3C,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrB,OAAO,GAAG,CAAC;IACf,CAAC;IANe,QAAG,MAMlB,CAAA;IAED,SAAgB,QAAQ,CAAC,CAAO,EAAE,CAAO;QACrC,IAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EACjB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EACf,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EACf,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACpB,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IACpD,CAAC;IANe,aAAQ,WAMvB,CAAA;IAED,SAAgB,KAAK,CAAC,GAAS,EAAE,CAAO,EAAE,CAAS;QAC/C,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAClB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAClB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAClB,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAClB,OAAO,GAAG,CAAC;IACf,CAAC;IANe,UAAK,QAMpB,CAAA;IAED;;OAEG;IACH,SAAgB,KAAK,CAAC,GAAS,EAAE,CAAO;QACpC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAA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package/lib/commonjs/mol-model/loci.d.ts CHANGED
@@ -54,56 +54,56 @@ declare namespace Loci {
54
54
  export function getPrincipalAxes(loci: Loci): PrincipalAxes | undefined;
55
55
  const Granularity: {
56
56
  element: (loci: Loci) => Loci;
57
- residue: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
57
+ residue: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
58
58
  kind: "every-loci";
59
59
  } | {
60
60
  kind: "empty-loci";
61
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
62
- chain: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
61
+ } | DataLoci<unknown, unknown>;
62
+ chain: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
63
63
  kind: "every-loci";
64
64
  } | {
65
65
  kind: "empty-loci";
66
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
67
- entity: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
66
+ } | DataLoci<unknown, unknown>;
67
+ entity: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
68
68
  kind: "every-loci";
69
69
  } | {
70
70
  kind: "empty-loci";
71
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
72
- model: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
71
+ } | DataLoci<unknown, unknown>;
72
+ model: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
73
73
  kind: "every-loci";
74
74
  } | {
75
75
  kind: "empty-loci";
76
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
77
- operator: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
76
+ } | DataLoci<unknown, unknown>;
77
+ operator: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
78
78
  kind: "every-loci";
79
79
  } | {
80
80
  kind: "empty-loci";
81
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
82
- structure: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
81
+ } | DataLoci<unknown, unknown>;
82
+ structure: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | {
83
83
  kind: "every-loci";
84
84
  } | {
85
85
  kind: "empty-loci";
86
- } | DataLoci<unknown, unknown> | Shape.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
87
- elementInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
86
+ } | DataLoci<unknown, unknown>;
87
+ elementInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
88
88
  kind: "every-loci";
89
89
  } | {
90
90
  kind: "empty-loci";
91
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
92
- residueInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
91
+ } | DataLoci<unknown, unknown>;
92
+ residueInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
93
93
  kind: "every-loci";
94
94
  } | {
95
95
  kind: "empty-loci";
96
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
97
- chainInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | {
96
+ } | DataLoci<unknown, unknown>;
97
+ chainInstances: (loci: Loci) => StructureElement.Loci | Structure.Loci | Bond.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci | Shape.Loci | ShapeGroup.Loci | {
98
98
  kind: "every-loci";
99
99
  } | {
100
100
  kind: "empty-loci";
101
- } | DataLoci<unknown, unknown> | Shape.Loci | ShapeGroup.Loci | Volume.Loci | Volume.Isosurface.Loci | Volume.Cell.Loci;
101
+ } | DataLoci<unknown, unknown>;
102
102
  };
103
103
  export type Granularity = keyof typeof Granularity;
104
- export const GranularityOptions: ["residue" | "entity" | "model" | "chain" | "element" | "structure" | "operator" | "elementInstances" | "residueInstances" | "chainInstances", string][];
104
+ export const GranularityOptions: ["element" | "operator" | "residue" | "entity" | "model" | "structure" | "chain" | "elementInstances" | "residueInstances" | "chainInstances", string][];
105
105
  /** Exclude `Instances` granularity kinds */
106
- export function simpleGranularity(granularity: Granularity): "residue" | "entity" | "model" | "chain" | "element" | "structure" | "operator" | "elementInstances" | "residueInstances" | "chainInstances";
106
+ export function simpleGranularity(granularity: Granularity): "element" | "operator" | "residue" | "entity" | "model" | "structure" | "chain" | "elementInstances" | "residueInstances" | "chainInstances";
107
107
  export function applyGranularity(loci: Loci, granularity: Granularity): Loci;
108
108
  /**
109
109
  * Converts structure related loci to StructureElement.Loci and applies
package/lib/commonjs/mol-model/sequence/sequence.js CHANGED
@@ -43,7 +43,7 @@ var Sequence;
43
43
  case "generic" /* Generic */:
44
44
  code = function () { return 'X'; };
45
45
  break;
46
- default: throw new Error("unknown kind '" + kind + "'");
46
+ default: throw new Error("unknown kind '".concat(kind, "'"));
47
47
  }
48
48
  if (map && map.size > 0) {
49
49
  return function (name) {
@@ -101,7 +101,7 @@ var Sequence;
101
101
  var c = codeFromName(id);
102
102
  return c === 'X' ? id : c;
103
103
  });
104
- labels[i] = "(" + l.join('|') + ")";
104
+ labels[i] = "(".concat(l.join('|'), ")");
105
105
  }
106
106
  else {
107
107
  labels[i] = codes[i] === 'X' ? compIds[i] : codes[i];
package/lib/commonjs/mol-model/sequence/sequence.js.map CHANGED
@@ -1 +1 @@
1
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package/lib/commonjs/mol-model/shape/shape.d.ts CHANGED
@@ -38,7 +38,7 @@ export declare namespace Shape {
38
38
  function getTheme(shape: Shape): Theme;
39
39
  function groupIterator(shape: Shape): LocationIterator;
40
40
  function createTransform(transforms: Mat4[], transformData?: TransformData): TransformData;
41
- function createRenderObject<G extends Geometry>(shape: Shape<G>, props: PD.Values<Geometry.Params<G>>): import("../../mol-gl/render-object").GraphicsRenderObject<"text" | "points" | "spheres" | "cylinders" | "lines" | "mesh" | "direct-volume" | "image" | "texture-mesh">;
41
+ function createRenderObject<G extends Geometry>(shape: Shape<G>, props: PD.Values<Geometry.Params<G>>): import("../../mol-gl/render-object").GraphicsRenderObject<"text" | "image" | "points" | "spheres" | "cylinders" | "lines" | "mesh" | "direct-volume" | "texture-mesh">;
42
42
  interface Loci {
43
43
  readonly kind: 'shape-loci';
44
44
  readonly shape: Shape;
package/lib/commonjs/mol-model/structure/export/categories/atom_site.js CHANGED
@@ -76,13 +76,13 @@ exports._atom_site = {
76
76
  };
77
77
  function prepostfixed(prefix, name) {
78
78
  if (prefix)
79
- return prefix + "_" + name;
79
+ return "".concat(prefix, "_").concat(name);
80
80
  return name;
81
81
  }
82
82
  function prefixedInsCode(prefix) {
83
83
  if (!prefix)
84
84
  return 'pdbx_PDB_ins_code';
85
- return "pdbx_" + prefix + "_PDB_ins_code";
85
+ return "pdbx_".concat(prefix, "_PDB_ins_code");
86
86
  }
87
87
  function mappedProp(loc, prop) {
88
88
  return function (k, d) { return prop(loc(k, d)); };
package/lib/commonjs/mol-model/structure/export/categories/atom_site.js.map CHANGED
@@ -1 +1 @@
1
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{"version":3,"file":"atom_site.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/export/categories/atom_site.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,qDAA0D;AAC1D,6CAAwF;AAExF,IAAO,QAAQ,GAAG,eAAS,CAAC,KAAK,CAAA;AAEjC,IAAO,CAAC,GAAG,eAAS,CAAC,SAAS,CAAA;AAE9B,SAAS,uBAAuB,CAAC,CAA4B;IACzD,IAAM,CAAC,GAAG,+BAAC,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC;IACnC,IAAM,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC;IACnD,IAAI,CAAC,MAAM;QAAE,OAAO,CAAC,CAAC;IACtB,OAAO,CAAC,GAAG,MAAM,CAAC;AACtB,CAAC;AAED,SAAS,sBAAsB,CAAC,CAA4B;IACxD,IAAM,CAAC,GAAG,+BAAC,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;IAClC,IAAM,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC;IACnD,IAAI,CAAC,MAAM;QAAE,OAAO,CAAC,CAAC;IACtB,OAAO,CAAC,GAAG,MAAM,CAAC;AACtB,CAAC;AAED,IAAM,gBAAgB,GAAG,cAAM,OAAA,eAAS,CAAC,MAAM,EAAwC;KAClF,GAAG,CAAC,WAAW,EAAE,+BAAC,CAAC,OAAO,CAAC,SAAS,CAAC;KACrC,KAAK,CAAC,IAAI,CAAC;KACX,GAAG,CAAC,aAAa,EAAE,+BAAC,CAAC,IAAI,CAAC,WAAkB,CAAC;KAC7C,GAAG,CAAC,eAAe,EAAE,+BAAC,CAAC,IAAI,CAAC,aAAa,CAAC;KAE1C,GAAG,CAAC,eAAe,EAAE,+BAAC,CAAC,IAAI,CAAC,aAAa,CAAC;KAC1C,GAAG,CAAC,cAAc,EAAE,+BAAC,CAAC,OAAO,CAAC,YAAY,EAAE;IACzC,OAAO,EAAE,CAAC,CAAC,QAAQ;IACnB,SAAS,EAAE,UAAC,CAAC,EAAE,CAAC;QACZ,IAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC;QACvB,OAAO,CAAC,CAAC,eAAe,CAAC,QAAQ,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,mBAAmB,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;IACrH,CAAC;CACJ,CAAC;KACD,GAAG,CAAC,cAAc,EAAE,+BAAC,CAAC,IAAI,CAAC,YAAY,CAAC;KACxC,GAAG,CAAC,mBAAmB,EAAE,+BAAC,CAAC,OAAO,CAAC,iBAAiB,CAAC;KAErD,GAAG,CAAC,eAAe,EAAE,uBAAuB,CAAC;KAC7C,GAAG,CAAC,iBAAiB,EAAE,+BAAC,CAAC,KAAK,CAAC,eAAe,CAAC;KAE/C,KAAK,CAAC,SAAS,EAAE,+BAAC,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,UAAU,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;KACrE,KAAK,CAAC,SAAS,EAAE,+BAAC,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,UAAU,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;KACrE,KAAK,CAAC,SAAS,EAAE,+BAAC,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,UAAU,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;KACrE,KAAK,CAAC,WAAW,EAAE,+BAAC,CAAC,IAAI,CAAC,SAAS,EAAE,EAAE,UAAU,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;KAC/E,KAAK,CAAC,gBAAgB,EAAE,+BAAC,CAAC,IAAI,CAAC,cAAc,EAAE,EAAE,UAAU,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;KACzF,GAAG,CAAC,oBAAoB,EAAE,+BAAC,CAAC,IAAI,CAAC,kBAAkB,EAAE;IAClD,OAAO,EAAE,CAAC,CAAC,QAAQ;IACnB,SAAS,EAAE,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,EAA1E,CAA0E;CAClG,CAAC;KAED,GAAG,CAAC,cAAc,EAAE,+BAAC,CAAC,IAAI,CAAC,YAAY,CAAC;KACxC,GAAG,CAAC,cAAc,EAAE,+BAAC,CAAC,IAAI,CAAC,YAAY,CAAC;KACxC,GAAG,CAAC,aAAa,EAAE,+BAAC,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;KAClE,GAAG,CAAC,cAAc,EAAE,sBAAsB,CAAC;KAE3C,GAAG,CAAC,oBAAoB,EAAE,+BAAC,CAAC,IAAI,CAAC,SAAS,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC;IACrE,gDAAgD;IAChD,iGAAiG;IACjG,KAAK;KACJ,SAAS,EAAE,EAvCe,CAuCf,CAAC;AAEJ,QAAA,UAAU,GAAkC;IACrD,IAAI,EAAE,WAAW;IACjB,QAAQ,EAAR,UAAS,EAAgC;YAA9B,UAAU,gBAAA;QACjB,OAAO;YACH,MAAM,EAAE,gBAAgB,EAAE;YAC1B,MAAM,EAAE,UAAU,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC;gBACzB,IAAI,EAAE,CAAC;gBACP,QAAQ,EAAE,CAAC,CAAC,YAAY;gBACxB,IAAI,EAAE,cAAM,OAAA,CAAC,CAAC,gBAAgB,EAAE,EAApB,CAAoB;aACnC,CAAC,EAJ0B,CAI1B,CAAC;SACN,CAAC;IACN,CAAC;CACJ,CAAC;AAEF,SAAS,YAAY,CAAC,MAA0B,EAAE,IAAY;IAC1D,IAAI,MAAM;QAAE,OAAO,UAAG,MAAM,cAAI,IAAI,CAAE,CAAC;IACvC,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,SAAS,eAAe,CAAC,MAA0B;IAC/C,IAAI,CAAC,MAAM;QAAE,OAAO,mBAAmB,CAAC;IACxC,OAAO,eAAQ,MAAM,kBAAe,CAAC;AACzC,CAAC;AAED,SAAS,UAAU,CAAO,GAAmD,EAAE,IAA2C;IACtH,OAAO,UAAC,CAAI,EAAE,CAAI,IAAK,OAAA,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAf,CAAe,CAAC;AAC3C,CAAC;AAED,SAAS,WAAW,CAAO,MAAqC,EAAE,WAA2D,EAAE,OAAyB;IACpJ,IAAI,OAAO,IAAI,OAAO,CAAC,eAAe,EAAE;QACpC,MAAM,CAAC,GAAG,CAAC,oBAAoB,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;KAC/E;AACL,CAAC;AAOD,SAAgB,eAAe,CAAO,WAA2D,EAAE,OAAyB;IACxH,IAAM,MAAM,GAAG,OAAO,IAAI,OAAO,CAAC,MAAM,CAAC;IACzC,IAAM,GAAG,GAAG,eAAS,CAAC,MAAM,EAAQ;SAC/B,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,eAAe,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;SACzF,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,cAAc,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE;QACxF,OAAO,EAAE,CAAC,CAAC,QAAQ;QACnB,SAAS,EAAE,UAAC,CAAC,EAAE,CAAC;YACZ,IAAM,CAAC,GAAG,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YAC5B,IAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC;YACvB,OAAO,CAAC,CAAC,eAAe,CAAC,QAAQ,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,mBAAmB,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;QACrH,CAAC;KACJ,CAAC;SACD,GAAG,CAAC,eAAe,CAAC,MAAM,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC;SAElF,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,eAAe,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;SAC1F,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,iBAAiB,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC;SAE9F,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,cAAc,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+BAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;SACvF,GAAG,CAAC,YAAY,CAAC,MAAM,EAAE,aAAa,CAAC,EAAE,UAAU,CAAC,WAAW,EAAE,+B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package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js CHANGED
@@ -75,7 +75,7 @@ function getEntries(ctx) {
75
75
  var chainSegment = chainsIt.move();
76
76
  l.element = elements[chainSegment.start];
77
77
  var label_asym_id = structure_1.StructureProperties.chain.label_asym_id(l);
78
- var key = "" + label_asym_id + operator.suffix;
78
+ var key = "".concat(label_asym_id).concat(operator.suffix);
79
79
  if (existing.has(key))
80
80
  continue;
81
81
  existing.add(key);
package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js.map CHANGED
@@ -1 +1 @@
1
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package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js CHANGED
@@ -40,7 +40,7 @@ function compare_ssr(x, y) {
40
40
  ;
41
41
  var struct_conf_fields = function () { return (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([
42
42
  CifField.str('conf_type_id', function (i, data) { return data[i].element.type_id; }),
43
- CifField.str('id', function (i, data, idx) { return "" + data[i].element.type_id + (idx + 1); })
43
+ CifField.str('id', function (i, data, idx) { return "".concat(data[i].element.type_id).concat(idx + 1); })
44
44
  ], (0, atom_site_1.residueIdFields)(function (i, e) { return e[i].start; }, { prefix: 'beg' }), true), (0, atom_site_1.residueIdFields)(function (i, e) { return e[i].end; }, { prefix: 'end' }), true), [
45
45
  CifField.str('pdbx_PDB_helix_class', function (i, data) { return data[i].element.helix_class; }),
46
46
  CifField.str('details', function (i, data) { return data[i].element.details || ''; }, {
package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js.map CHANGED
@@ -1 +1 @@
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