npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/extensions/dnatco/confal-pyramids/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/g3d/data.js CHANGED Viewed

@@ -34,7 +34,7 @@ export function getG3dDataBlock(ctx, header, urlOrData, resolution) {
             switch (_a.label) {
                 case 0:
                     if (!header.offsets[resolution])
-                        throw new Error("Resolution " + resolution + " not available.");
+                        throw new Error("Resolution ".concat(resolution, " not available."));
                     return [4 /*yield*/, getRawData(ctx, urlOrData, header.offsets[resolution])];
                 case 1:
                     data = _a.sent();
@@ -56,7 +56,7 @@ function getRawData(ctx, urlOrData, range) {
             switch (_a.label) {
                 case 0:
                     if (!(typeof urlOrData === 'string')) return [3 /*break*/, 2];
-                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=" + range.offset + "-" + (range.offset + range.size - 1)]], type: 'binary' }))];
+                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=".concat(range.offset, "-").concat(range.offset + range.size - 1)]], type: 'binary' }))];
                 case 1: return [2 /*return*/, _a.sent()];
                 case 2: return [2 /*return*/, urlOrData.slice(range.offset, range.offset + range.size)];
             }

package/lib/extensions/g3d/data.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/g3d/model.js CHANGED Viewed

@@ -39,7 +39,7 @@ function getColumns(block) {
     var o = 0;
     objectForEach(data, function (hs, h) {
         objectForEach(hs, function (chs, ch) {
-            var entity_id = ch + "-" + h;
+            var entity_id = "".concat(ch, "-").concat(h);
             var l = chs.start.length;
             if (l === 0)
                 return;
@@ -202,7 +202,7 @@ export var G3dLabelProvider = {
             return;
         var eI = first.unit.elements[OrderedSet.getAt(first.indices, 0)];
         var seqId = first.unit.model.coarseHierarchy.spheres.seq_id_begin.value(eI);
-        return "<b>Start:</b> " + info.start[seqId] + " <small>| resolution " + info.resolution + "<small>";
+        return "<b>Start:</b> ".concat(info.start[seqId], " <small>| resolution ").concat(info.resolution, "<small>");
     }
 };
 //# sourceMappingURL=model.js.map

package/lib/extensions/g3d/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/geo-export/controls.js CHANGED Viewed

@@ -39,7 +39,7 @@ var GeometryControls = /** @class */ (function (_super) {
         var uniqueIds = new Set();
         models.forEach(function (m) { return uniqueIds.add(m.entryId.toUpperCase()); });
         var idString = SetUtils.toArray(uniqueIds).join('-');
-        return "" + (idString || 'molstar-model');
+        return "".concat(idString || 'molstar-model');
     };
     GeometryControls.prototype.exportGeometry = function () {
         var _this = this;
@@ -75,7 +75,7 @@ var GeometryControls = /** @class */ (function (_super) {
                         _e.label = 1;
                     case 1:
                         if (!(i < il)) return [3 /*break*/, 5];
-                        return [4 /*yield*/, ctx.update({ message: "Exporting object " + i + "/" + il })];
+                        return [4 /*yield*/, ctx.update({ message: "Exporting object ".concat(i, "/").concat(il) })];
                     case 2:
                         _e.sent();
                         return [4 /*yield*/, renderObjectExporter.add(renderObjects[i], (_d = this.plugin.canvas3d) === null || _d === void 0 ? void 0 : _d.webgl, ctx)];
@@ -94,7 +94,7 @@ var GeometryControls = /** @class */ (function (_super) {
                             }];
                     case 7:
                         e_1 = _e.sent();
-                        this.plugin.log.error('' + e_1);
+                        this.plugin.log.error('Error during geometry export');
                         throw e_1;
                     case 8: return [2 /*return*/];
                 }

package/lib/extensions/geo-export/controls.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/geo-export/glb-exporter.d.ts CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { Style } from '../../mol-gl/renderer';
 import { Box3D } from '../../mol-math/geometry';

package/lib/extensions/geo-export/glb-exporter.js CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { __awaiter, __extends, __generator, __spreadArray } from "tslib";
 import { asciiWrite } from '../../mol-io/common/ascii';
@@ -21,6 +22,11 @@ var UNSIGNED_INT = 5125;
 var FLOAT = 5126;
 var ARRAY_BUFFER = 34962;
 var ELEMENT_ARRAY_BUFFER = 34963;
+var GLTF_MAGIC_BYTE = 0x46546C67;
+var JSON_CHUNK_TYPE = 0x4E4F534A;
+var BIN_CHUNK_TYPE = 0x004E4942;
+var JSON_PAD_CHAR = 0x20;
+var BIN_PAD_CHAR = 0x00;
 var GlbExporter = /** @class */ (function (_super) {
     __extends(GlbExporter, _super);
     function GlbExporter(style, boundingBox) {
@@ -110,20 +116,14 @@ var GlbExporter = /** @class */ (function (_super) {
             indexAccessorIndex: isGeoTexture ? undefined : this.addBuffer(indexBuffer, UNSIGNED_INT, 'SCALAR', drawCount, ELEMENT_ARRAY_BUFFER)
         };
     };
-    GlbExporter.prototype.addColorBuffer = function (values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors) {
-        var groupCount = values.uGroupCount.ref.value;
+    GlbExporter.prototype.addColorBuffer = function (geoData, interpolatedColors, interpolatedOverpaint, interpolatedTransparency) {
+        var values = geoData.values, vertexCount = geoData.vertexCount;
         var uAlpha = values.uAlpha.ref.value;
-        var dTransparency = values.dTransparency.ref.value;
-        var tTransparency = values.tTransparency.ref.value;
         var colorArray = new Uint8Array(vertexCount * 4);
         for (var i = 0; i < vertexCount; ++i) {
-            var color = GlbExporter.getColor(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, i);
-            var alpha = uAlpha;
-            if (dTransparency) {
-                var group = isGeoTexture ? GlbExporter.getGroup(groups, i) : groups[i];
-                var transparency = tTransparency.array[instanceIndex * groupCount + group] / 255;
-                alpha *= 1 - transparency;
-            }
+            var color = GlbExporter.getColor(i, geoData, interpolatedColors, interpolatedOverpaint);
+            var transparency = GlbExporter.getTransparency(i, geoData, interpolatedTransparency);
+            var alpha = uAlpha * (1 - transparency);
             color = Color.sRGBToLinear(color);
             Color.toArray(color, colorArray, i * 4);
             colorArray[i * 4 + 3] = Math.round(alpha * 255);
@@ -136,19 +136,29 @@ var GlbExporter = /** @class */ (function (_super) {
     };
     GlbExporter.prototype.addMeshWithColors = function (input) {
         return __awaiter(this, void 0, void 0, function () {
-            var mesh, values, isGeoTexture, webgl, ctx, t, colorType, dTransparency, aTransform, instanceCount, interpolatedColors, stride, sameGeometryBuffers, sameColorBuffer, vertexAccessorIndex, normalAccessorIndex, indexAccessorIndex, colorAccessorIndex, meshIndex, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, accessorIndices, node;
+            var mesh, values, isGeoTexture, webgl, ctx, t, colorType, overpaintType, transparencyType, dTransparency, aTransform, instanceCount, interpolatedColors, stride, interpolatedOverpaint, stride, interpolatedTransparency, stride, sameGeometryBuffers, sameColorBuffer, vertexAccessorIndex, normalAccessorIndex, indexAccessorIndex, colorAccessorIndex, meshIndex, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, accessorIndices, node;
             return __generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         mesh = input.mesh, values = input.values, isGeoTexture = input.isGeoTexture, webgl = input.webgl, ctx = input.ctx;
                         t = Mat4();
                         colorType = values.dColorType.ref.value;
+                        overpaintType = values.dOverpaintType.ref.value;
+                        transparencyType = values.dTransparencyType.ref.value;
                         dTransparency = values.dTransparency.ref.value;
                         aTransform = values.aTransform.ref.value;
                         instanceCount = values.uInstanceCount.ref.value;
                         if (colorType === 'volume' || colorType === 'volumeInstance') {
                             stride = isGeoTexture ? 4 : 3;
-                            interpolatedColors = GlbExporter.getInterpolatedColors(mesh.vertices, mesh.vertexCount, values, stride, colorType, webgl);
+                            interpolatedColors = GlbExporter.getInterpolatedColors(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: colorType });
+                        }
+                        if (overpaintType === 'volumeInstance') {
+                            stride = isGeoTexture ? 4 : 3;
+                            interpolatedOverpaint = GlbExporter.getInterpolatedOverpaint(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: overpaintType });
+                        }
+                        if (transparencyType === 'volumeInstance') {
+                            stride = isGeoTexture ? 4 : 3;
+                            interpolatedTransparency = GlbExporter.getInterpolatedTransparency(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: transparencyType });
                         }
                         sameGeometryBuffers = mesh !== undefined;
                         sameColorBuffer = sameGeometryBuffers && colorType !== 'instance' && !colorType.endsWith('Instance') && !dTransparency;
@@ -177,7 +187,7 @@ var GlbExporter = /** @class */ (function (_super) {
                             }
                             // create a color buffer if needed
                             if (instanceIndex === 0 || !sameColorBuffer) {
-                                colorAccessorIndex = this.addColorBuffer(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors);
+                                colorAccessorIndex = this.addColorBuffer({ values: values, groups: groups, vertexCount: vertexCount, instanceIndex: instanceIndex, isGeoTexture: isGeoTexture }, interpolatedColors, interpolatedOverpaint, interpolatedTransparency);
                             }
                             // glTF mesh
                             meshIndex = this.meshes.length;
@@ -218,7 +228,7 @@ var GlbExporter = /** @class */ (function (_super) {
                 gltf = {
                     asset: {
                         version: '2.0',
-                        generator: "Mol* " + PLUGIN_VERSION
+                        generator: "Mol* ".concat(PLUGIN_VERSION)
                     },
                     scenes: [{
                             nodes: fillSerial(new Array(this.nodes.length))
@@ -259,12 +269,12 @@ var GlbExporter = /** @class */ (function (_super) {
                 jsonString = JSON.stringify(gltf);
                 jsonBuffer = new Uint8Array(jsonString.length);
                 asciiWrite(jsonBuffer, jsonString);
-                _a = createChunk(0x4E4F534A, [jsonBuffer.buffer], jsonBuffer.length, 0x20), jsonChunk = _a[0], jsonChunkLength = _a[1];
-                _b = createChunk(0x004E4942, this.binaryBuffer, binaryBufferLength, 0x00), binaryChunk = _b[0], binaryChunkLength = _b[1];
+                _a = createChunk(JSON_CHUNK_TYPE, [jsonBuffer.buffer], jsonBuffer.length, JSON_PAD_CHAR), jsonChunk = _a[0], jsonChunkLength = _a[1];
+                _b = createChunk(BIN_CHUNK_TYPE, this.binaryBuffer, binaryBufferLength, BIN_PAD_CHAR), binaryChunk = _b[0], binaryChunkLength = _b[1];
                 glbBufferLength = 12 + jsonChunkLength + binaryChunkLength;
                 header = new ArrayBuffer(12);
                 headerDataView = new DataView(header);
-                headerDataView.setUint32(0, 0x46546C67, true); // magic number "glTF"
+                headerDataView.setUint32(0, GLTF_MAGIC_BYTE, true); // magic number "glTF"
                 headerDataView.setUint32(4, 2, true); // version
                 headerDataView.setUint32(8, glbBufferLength, true); // length
                 glbBuffer = __spreadArray(__spreadArray([header], jsonChunk, true), binaryChunk, true);

package/lib/extensions/geo-export/glb-exporter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/geo-export/mesh-exporter.d.ts CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { GraphicsRenderObject } from '../../mol-gl/render-object';
 import { BaseValues } from '../../mol-gl/renderable/schema';
@@ -25,12 +26,39 @@ export interface AddMeshInput {
     webgl: WebGLContext | undefined;
     ctx: RuntimeContext;
 }
+export declare type MeshGeoData = {
+    values: BaseValues;
+    groups: Float32Array | Uint8Array;
+    vertexCount: number;
+    instanceIndex: number;
+    isGeoTexture: boolean;
+};
 export declare abstract class MeshExporter<D extends RenderObjectExportData> implements RenderObjectExporter<D> {
     abstract readonly fileExtension: string;
     private static getSizeFromTexture;
     private static getSize;
     protected static getGroup(groups: Float32Array | Uint8Array, i: number): number;
-    protected static getInterpolatedColors(vertices: Float32Array, vertexCount: number, values: BaseValues, stride: number, colorType: 'volume' | 'volumeInstance', webgl: WebGLContext): Uint8Array;
+    protected static getInterpolatedColors(webgl: WebGLContext, input: {
+        vertices: Float32Array;
+        vertexCount: number;
+        values: BaseValues;
+        stride: 3 | 4;
+        colorType: 'volume' | 'volumeInstance';
+    }): Uint8Array;
+    protected static getInterpolatedOverpaint(webgl: WebGLContext, input: {
+        vertices: Float32Array;
+        vertexCount: number;
+        values: BaseValues;
+        stride: 3 | 4;
+        colorType: 'volumeInstance';
+    }): Uint8Array;
+    protected static getInterpolatedTransparency(webgl: WebGLContext, input: {
+        vertices: Float32Array;
+        vertexCount: number;
+        values: BaseValues;
+        stride: 3 | 4;
+        colorType: 'volumeInstance';
+    }): Uint8Array;
     protected static quantizeColors(colorArray: Uint8Array, vertexCount: number): void;
     protected static getInstance(input: AddMeshInput, instanceIndex: number): {
         vertices: Float32Array;
@@ -40,7 +68,8 @@ export declare abstract class MeshExporter<D extends RenderObjectExportData> imp
         vertexCount: number;
         drawCount: number;
     };
-    protected static getColor(values: BaseValues, groups: Float32Array | Uint8Array, vertexCount: number, instanceIndex: number, isGeoTexture: boolean, interpolatedColors: Uint8Array | undefined, vertexIndex: number): Color;
+    protected static getColor(vertexIndex: number, geoData: MeshGeoData, interpolatedColors?: Uint8Array, interpolatedOverpaint?: Uint8Array): Color;
+    protected static getTransparency(vertexIndex: number, geoData: MeshGeoData, interpolatedTransparency?: Uint8Array): number;
     protected abstract addMeshWithColors(input: AddMeshInput): void;
     private addMesh;
     private addLines;

package/lib/extensions/geo-export/mesh-exporter.js CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { __awaiter, __generator } from "tslib";
 import { sort, arraySwap } from '../../mol-data/util';
@@ -14,6 +15,7 @@ import { sizeDataFactor } from '../../mol-geo/geometry/size-data';
 import { Vec3 } from '../../mol-math/linear-algebra';
 import { Color } from '../../mol-util/color/color';
 import { decodeFloatRGB } from '../../mol-util/float-packing';
+import { readAlphaTexture, readTexture } from '../../mol-gl/compute/util';
 var GeoExportName = 'geo-export';
 // avoiding namespace lookup improved performance in Chrome (Aug 2020)
 var v3fromArray = Vec3.fromArray;
@@ -56,22 +58,37 @@ var MeshExporter = /** @class */ (function () {
         }
         return decodeFloatRGB(r, g, b);
     };
-    MeshExporter.getInterpolatedColors = function (vertices, vertexCount, values, stride, colorType, webgl) {
+    MeshExporter.getInterpolatedColors = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
         var colorGridTransform = values.uColorGridTransform.ref.value;
         var colorGridDim = values.uColorGridDim.ref.value;
         var colorTexDim = values.uColorTexDim.ref.value;
         var aTransform = values.aTransform.ref.value;
         var instanceCount = values.uInstanceCount.ref.value;
-        if (!webgl.namedFramebuffers[GeoExportName]) {
-            webgl.namedFramebuffers[GeoExportName] = webgl.resources.framebuffer();
-        }
-        var framebuffer = webgl.namedFramebuffers[GeoExportName];
-        var width = colorTexDim[0], height = colorTexDim[1];
-        var colorGrid = new Uint8Array(width * height * 4);
-        framebuffer.bind();
-        values.tColorGrid.ref.value.attachFramebuffer(framebuffer, 0);
-        webgl.readPixels(0, 0, width, height, colorGrid);
-        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: colorGrid, gridDim: colorGridDim, gridTexDim: colorTexDim, gridTransform: colorGridTransform, vertexStride: stride, colorStride: 4 });
+        var colorGrid = readTexture(webgl, values.tColorGrid.ref.value).array;
+        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: colorGrid, gridDim: colorGridDim, gridTexDim: colorTexDim, gridTransform: colorGridTransform, vertexStride: stride, colorStride: 4, outputStride: 3 });
+        return interpolated.array;
+    };
+    MeshExporter.getInterpolatedOverpaint = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
+        var overpaintGridTransform = values.uOverpaintGridTransform.ref.value;
+        var overpaintGridDim = values.uOverpaintGridDim.ref.value;
+        var overpaintTexDim = values.uOverpaintTexDim.ref.value;
+        var aTransform = values.aTransform.ref.value;
+        var instanceCount = values.uInstanceCount.ref.value;
+        var overpaintGrid = readTexture(webgl, values.tOverpaintGrid.ref.value).array;
+        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: overpaintGrid, gridDim: overpaintGridDim, gridTexDim: overpaintTexDim, gridTransform: overpaintGridTransform, vertexStride: stride, colorStride: 4, outputStride: 4 });
+        return interpolated.array;
+    };
+    MeshExporter.getInterpolatedTransparency = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
+        var transparencyGridTransform = values.uTransparencyGridTransform.ref.value;
+        var transparencyGridDim = values.uTransparencyGridDim.ref.value;
+        var transparencyTexDim = values.uTransparencyTexDim.ref.value;
+        var aTransform = values.aTransform.ref.value;
+        var instanceCount = values.uInstanceCount.ref.value;
+        var transparencyGrid = readAlphaTexture(webgl, values.tTransparencyGrid.ref.value).array;
+        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: transparencyGrid, gridDim: transparencyGridDim, gridTexDim: transparencyTexDim, gridTransform: transparencyGridTransform, vertexStride: stride, colorStride: 4, outputStride: 1, itemOffset: 3 });
         return interpolated.array;
     };
     MeshExporter.quantizeColors = function (colorArray, vertexCount) {
@@ -153,11 +170,13 @@ var MeshExporter = /** @class */ (function () {
             };
         }
     };
-    MeshExporter.getColor = function (values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, vertexIndex) {
+    MeshExporter.getColor = function (vertexIndex, geoData, interpolatedColors, interpolatedOverpaint) {
+        var values = geoData.values, instanceIndex = geoData.instanceIndex, isGeoTexture = geoData.isGeoTexture, groups = geoData.groups, vertexCount = geoData.vertexCount;
         var groupCount = values.uGroupCount.ref.value;
         var colorType = values.dColorType.ref.value;
         var uColor = values.uColor.ref.value;
         var tColor = values.tColor.ref.value.array;
+        var overpaintType = values.dOverpaintType.ref.value;
         var dOverpaint = values.dOverpaint.ref.value;
         var tOverpaint = values.tOverpaint.ref.value.array;
         var color;
@@ -193,13 +212,66 @@ var MeshExporter = /** @class */ (function () {
             default: throw new Error('Unsupported color type.');
         }
         if (dOverpaint) {
-            var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
-            var overpaintColor = Color.fromArray(tOverpaint, (instanceIndex * groupCount + group) * 4);
-            var overpaintAlpha = tOverpaint[(instanceIndex * groupCount + group) * 4 + 3] / 255;
+            var overpaintColor = void 0;
+            var overpaintAlpha = void 0;
+            switch (overpaintType) {
+                case 'groupInstance': {
+                    var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
+                    var idx = (instanceIndex * groupCount + group) * 4;
+                    overpaintColor = Color.fromArray(tOverpaint, idx);
+                    overpaintAlpha = tOverpaint[idx + 3] / 255;
+                    break;
+                }
+                case 'vertexInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex) * 4;
+                    overpaintColor = Color.fromArray(tOverpaint, idx);
+                    overpaintAlpha = tOverpaint[idx + 3] / 255;
+                    break;
+                }
+                case 'volumeInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex) * 4;
+                    overpaintColor = Color.fromArray(interpolatedOverpaint, idx);
+                    overpaintAlpha = interpolatedOverpaint[idx + 3] / 255;
+                    break;
+                }
+                default: throw new Error('Unsupported overpaint type.');
+            }
+            // interpolate twice to avoid darkening due to empty overpaint
+            overpaintColor = Color.interpolate(color, overpaintColor, overpaintAlpha);
             color = Color.interpolate(color, overpaintColor, overpaintAlpha);
         }
         return color;
     };
+    MeshExporter.getTransparency = function (vertexIndex, geoData, interpolatedTransparency) {
+        var values = geoData.values, instanceIndex = geoData.instanceIndex, isGeoTexture = geoData.isGeoTexture, groups = geoData.groups, vertexCount = geoData.vertexCount;
+        var groupCount = values.uGroupCount.ref.value;
+        var dTransparency = values.dTransparency.ref.value;
+        var tTransparency = values.tTransparency.ref.value.array;
+        var transparencyType = values.dTransparencyType.ref.value;
+        var transparency = 0;
+        if (dTransparency) {
+            switch (transparencyType) {
+                case 'groupInstance': {
+                    var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
+                    var idx = (instanceIndex * groupCount + group);
+                    transparency = tTransparency[idx] / 255;
+                    break;
+                }
+                case 'vertexInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex);
+                    transparency = tTransparency[idx] / 255;
+                    break;
+                }
+                case 'volumeInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex);
+                    transparency = interpolatedTransparency[idx] / 255;
+                    break;
+                }
+                default: throw new Error('Unsupported transparency type.');
+            }
+        }
+        return transparency;
+    };
     MeshExporter.prototype.addMesh = function (values, webgl, ctx) {
         return __awaiter(this, void 0, void 0, function () {
             var aPosition, aNormal, aGroup, originalData, indices, vertexCount, drawCount;