npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts CHANGED Viewed

@@ -1,16 +1,21 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { ValueCell } from '../../mol-util/value-cell';
-import { Vec2 } from '../../mol-math/linear-algebra';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
 import { TextureImage } from '../../mol-gl/renderable/util';
 import { Color } from '../../mol-util/color';
+import { Texture } from '../../mol-gl/webgl/texture';
 export declare type OverpaintData = {
     tOverpaint: ValueCell<TextureImage<Uint8Array>>;
     uOverpaintTexDim: ValueCell<Vec2>;
     dOverpaint: ValueCell<boolean>;
+    tOverpaintGrid: ValueCell<Texture>;
+    uOverpaintGridDim: ValueCell<Vec3>;
+    uOverpaintGridTransform: ValueCell<Vec4>;
+    dOverpaintType: ValueCell<string>;
 };
 export declare function applyOverpaintColor(array: Uint8Array, start: number, end: number, color: Color): boolean;
 export declare function clearOverpaint(array: Uint8Array, start: number, end: number): boolean;

package/lib/commonjs/mol-geo/geometry/overpaint-data.js CHANGED Viewed

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -10,6 +10,7 @@ var value_cell_1 = require("../../mol-util/value-cell");
 var linear_algebra_1 = require("../../mol-math/linear-algebra");
 var util_1 = require("../../mol-gl/renderable/util");
 var color_1 = require("../../mol-util/color");
+var texture_1 = require("../../mol-gl/webgl/texture");
 function applyOverpaintColor(array, start, end, color) {
     for (var i = start; i < end; ++i) {
         color_1.Color.toArray(color, array, i * 4);
@@ -36,6 +37,10 @@ function createOverpaint(count, overpaintData) {
             tOverpaint: value_cell_1.ValueCell.create(overpaint),
             uOverpaintTexDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec2.create(overpaint.width, overpaint.height)),
             dOverpaint: value_cell_1.ValueCell.create(count > 0),
+            tOverpaintGrid: value_cell_1.ValueCell.create((0, texture_1.createNullTexture)()),
+            uOverpaintGridDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)),
+            uOverpaintGridTransform: value_cell_1.ValueCell.create(linear_algebra_1.Vec4.create(0, 0, 0, 1)),
+            dOverpaintType: value_cell_1.ValueCell.create('groupInstance'),
         };
     }
 }
@@ -52,6 +57,10 @@ function createEmptyOverpaint(overpaintData) {
             tOverpaint: value_cell_1.ValueCell.create(emptyOverpaintTexture),
             uOverpaintTexDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec2.create(1, 1)),
             dOverpaint: value_cell_1.ValueCell.create(false),
+            tOverpaintGrid: value_cell_1.ValueCell.create((0, texture_1.createNullTexture)()),
+            uOverpaintGridDim: value_cell_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)),
+            uOverpaintGridTransform: value_cell_1.ValueCell.create(linear_algebra_1.Vec4.create(0, 0, 0, 1)),
+            dOverpaintType: value_cell_1.ValueCell.create('groupInstance'),
         };
     }
 }

package/lib/commonjs/mol-geo/geometry/overpaint-data.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"overpaint-data.js","sourceRoot":"","sources":["../../../../src/mol-geo/geometry/overpaint-data.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,wDAAsD;AACtD,~~gEAAqD~~;~~AACrD~~,qDAAgF;AAChF,8CAA6C;~~AAQ7C~~,SAAgB,mBAAmB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,KAAY;IAC3F,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,aAAK,CAAC,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACnC,KAAK,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAND,kDAMC;AAED,SAAgB,cAAc,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IACxE,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAClC,OAAO,IAAI,CAAC;AAChB,CAAC;AAHD,wCAGC;AAED,SAAgB,eAAe,CAAC,KAAa,EAAE,aAA6B;IACxE,IAAM,SAAS,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,aAAa,IAAI,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACnI,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACtD,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;QACjG,sBAAS,CAAC,eAAe,CAAC,aAAa,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC/D,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,SAAS,CAAC;YACvC,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YAClF,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;~~SAC1C~~,CAAC;KACL;AACL,CAAC;~~AAdD~~,~~0CAcC~~;AAED,IAAM,qBAAqB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AAChF,SAAgB,oBAAoB,CAAC,aAA6B;IAC9D,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,qBAAqB,CAAC,CAAC;QAClE,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAqB,CAAC;YACnD,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACrD,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,CAAC;~~SACtC~~,CAAC;KACL;AACL,CAAC;~~AAZD~~,~~oDAYC~~"}
1	+ {"version":3,"file":"overpaint-data.js","sourceRoot":"","sources":["../../../../src/mol-geo/geometry/overpaint-data.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,wDAAsD;AACtD,gEAAiE;AACjE,qDAAgF;AAChF,8CAA6C;AAC7C,sDAAwE;AAaxE,SAAgB,mBAAmB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,KAAY;IAC3F,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,aAAK,CAAC,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACnC,KAAK,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAND,kDAMC;AAED,SAAgB,cAAc,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IACxE,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAClC,OAAO,IAAI,CAAC;AAChB,CAAC;AAHD,wCAGC;AAED,SAAgB,eAAe,CAAC,KAAa,EAAE,aAA6B;IACxE,IAAM,SAAS,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,aAAa,IAAI,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACnI,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACtD,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;QACjG,sBAAS,CAAC,eAAe,CAAC,aAAa,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC/D,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,SAAS,CAAC;YACvC,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YAClF,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;YAEvC,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,IAAA,2BAAiB,GAAE,CAAC;YACrD,iBAAiB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC;AAnBD,0CAmBC;AAED,IAAM,qBAAqB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AAChF,SAAgB,oBAAoB,CAAC,aAA6B;IAC9D,IAAI,aAAa,EAAE;QACf,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,qBAAqB,CAAC,CAAC;QAClE,sBAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAqB,CAAC;YACnD,gBAAgB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACrD,UAAU,EAAE,sBAAS,CAAC,MAAM,CAAC,KAAK,CAAC;YAEnC,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,IAAA,2BAAiB,GAAE,CAAC;YACrD,iBAAiB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,sBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,sBAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC;AAjBD,oDAiBC"}

package/lib/commonjs/mol-geo/geometry/points/points.d.ts CHANGED Viewed

@@ -34,13 +34,13 @@ export declare namespace Points {
         fuzzy: string;
     };
     type StyleTypes = keyof typeof StyleTypes;
-    const StyleTypeNames: ("square" | "circle" | "fuzzy")[];
+    const StyleTypeNames: ("circle" | "square" | "fuzzy")[];
     const Params: {
         sizeFactor: PD.Numeric;
         pointSizeAttenuation: PD.BooleanParam;
-        pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
+        pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Points, Params>;

package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts CHANGED Viewed

@@ -35,8 +35,7 @@ export declare namespace Spheres {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        /** Number of spheres */
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Spheres, Params>;

package/lib/commonjs/mol-geo/geometry/text/font-atlas.js CHANGED Viewed

@@ -50,7 +50,7 @@ var FontAtlas = /** @class */ (function () {
         this.scratchCanvas.width = this.maxWidth;
         this.scratchCanvas.height = this.lineHeight;
         this.scratchContext = this.scratchCanvas.getContext('2d');
-        this.scratchContext.font = p.fontStyle + " " + p.fontVariant + " " + p.fontWeight + " " + fontSize + "px " + p.fontFamily;
+        this.scratchContext.font = "".concat(p.fontStyle, " ").concat(p.fontVariant, " ").concat(p.fontWeight, " ").concat(fontSize, "px ").concat(p.fontFamily);
         this.scratchContext.fillStyle = 'black';
         this.scratchContext.textBaseline = 'middle';
         // SDF scratch values

package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/text/text.d.ts CHANGED Viewed

@@ -59,7 +59,7 @@ export declare namespace Text {
         fontVariant: PD.Select<import("./font-atlas").FontVariant>;
         fontWeight: PD.Select<import("./font-atlas").FontWeight>;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Text, Params>;

package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts CHANGED Viewed

@@ -8,7 +8,7 @@ import { Texture } from '../../../mol-gl/webgl/texture';
 import { ValueSpec, AttributeSpec, UniformSpec, TextureSpec, DefineSpec } from '../../../mol-gl/renderable/schema';
 import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { Sphere3D } from '../../../mol-math/geometry';
-import { TextureImage } from '../../../mol-gl/renderable/util';
+import { TextureMeshValues } from '../../../mol-gl/renderable/texture-mesh';
 export declare const ColorAccumulateSchema: {
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -23,7 +23,7 @@ export declare const ColorAccumulateSchema: {
     tPosition: TextureSpec<"texture">;
     tGroup: TextureSpec<"texture">;
     uColorTexDim: UniformSpec<"v2">;
-    tColor: TextureSpec<"image-uint8">;
+    tColor: TextureSpec<"texture">;
     dColorType: DefineSpec<"string">;
     uCurrentSlice: UniformSpec<"f">;
     uCurrentX: UniformSpec<"f">;
@@ -40,11 +40,12 @@ interface AccumulateInput {
     instanceBuffer: Float32Array;
     positionTexture: Texture;
     groupTexture: Texture;
-    colorData: TextureImage<Uint8Array>;
+    colorData: Texture;
     colorType: 'group' | 'groupInstance';
 }
 export declare const ColorNormalizeSchema: {
     tColor: TextureSpec<"texture">;
+    tCount: TextureSpec<"texture">;
     uTexSize: UniformSpec<"v2">;
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -62,4 +63,7 @@ export declare function calcTextureMeshColorSmoothing(input: ColorSmoothingInput
     gridTransform: Vec4;
     type: string;
 };
+export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshOverpaintSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshTransparencySmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
 export {};