molstar 2.3.7 → 2.4.1

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js

@@ -16,8 +16,9 @@ var algorithm_1 = require("../../../mol-geo/util/marching-cubes/algorithm");
 var element_1 = require("./util/element");
 var common_1 = require("./util/common");
 var geometry_1 = require("../../../mol-math/geometry");
-var color_1 = require("./util/color");
-exports.MolecularSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), color_1.ColorSmoothingParams);
+var color_smoothing_1 = require("../../../mol-geo/geometry/mesh/color-smoothing");
+var base_1 = require("../../../mol-geo/geometry/base");
+exports.MolecularSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), base_1.ColorSmoothingParams);
 //
 function createMolecularSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
     return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
@@ -82,9 +83,9 @@ function MolecularSurfaceMeshVisual(materialId) {
         },
         processValues: function (values, geometry, props, theme, webgl) {
             var _a = geometry.meta, resolution = _a.resolution, colorTexture = _a.colorTexture;
-            var csp = (0, color_1.getColorSmoothingProps)(props, theme, resolution);
+            var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, theme.color.preferSmoothing, resolution);
             if (csp) {
-                (0, color_1.applyMeshColorSmoothing)(values, csp.resolution, csp.stride, webgl, colorTexture);
+                (0, color_smoothing_1.applyMeshColorSmoothing)(values, csp.resolution, csp.stride, webgl, colorTexture);
                 geometry.meta.colorTexture = values.tColorGrid.ref.value;
             }
         },

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts

@@ -13,10 +13,10 @@ export declare const MolecularSurfaceWireframeParams: {
     probeRadius: PD.Numeric;
     resolution: PD.Numeric;
     probePositions: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type MolecularSurfaceWireframeParams = typeof MolecularSurfaceWireframeParams;
 export declare function MolecularSurfaceWireframeVisual(materialId: number): UnitsVisual<MolecularSurfaceWireframeParams>;

package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts

@@ -17,7 +17,7 @@ export declare type NucleotideBlockMeshProps = typeof DefaultNucleotideBlockMesh
 export declare const NucleotideBlockParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -25,7 +25,7 @@ export declare const NucleotideBlockParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type NucleotideBlockParams = typeof NucleotideBlockParams;
 export declare function NucleotideBlockVisual(materialId: number): UnitsVisual<NucleotideBlockParams>;

package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts

@@ -20,7 +20,7 @@ export declare const NucleotideRingParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
     detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -28,7 +28,7 @@ export declare const NucleotideRingParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type NucleotideRingParams = typeof NucleotideRingParams;
 export declare function NucleotideRingVisual(materialId: number): UnitsVisual<NucleotideRingParams>;

package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts

@@ -12,7 +12,7 @@ import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
 export declare const OrientationEllipsoidMeshParams: {
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -20,7 +20,7 @@ export declare const OrientationEllipsoidMeshParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type OrientationEllipsoidMeshParams = typeof OrientationEllipsoidMeshParams;
 export declare function OrientationEllipsoidMeshVisual(materialId: number): UnitsVisual<OrientationEllipsoidMeshParams>;

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts

@@ -11,14 +11,14 @@ export declare const PolymerBackboneCylinderParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     sizeAspectRatio: PD.Numeric;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
 };
@@ -27,14 +27,14 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     sizeAspectRatio: PD.Numeric;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
 }>;

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts

@@ -11,13 +11,13 @@ export declare const PolymerBackboneSphereParams: {
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
 };
@@ -26,13 +26,13 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
 }>;

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts

@@ -14,7 +14,7 @@ export declare const DefaultPolymerDirectionWedgeProps: PD.Values<{
 export declare type PolymerDirectionWedgeProps = typeof DefaultPolymerDirectionWedgeProps;
 export declare const PolymerDirectionParams: {
     sizeFactor: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -22,7 +22,7 @@ export declare const PolymerDirectionParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PolymerDirectionParams = typeof PolymerDirectionParams;
 export declare function PolymerDirectionVisual(materialId: number): UnitsVisual<PolymerDirectionParams>;

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts

@@ -17,7 +17,7 @@ export declare type PolymerGapCylinderProps = typeof DefaultPolymerGapCylinderPr
 export declare const PolymerGapParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -25,7 +25,7 @@ export declare const PolymerGapParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PolymerGapParams = typeof PolymerGapParams;
 export declare function PolymerGapVisual(materialId: number): UnitsVisual<PolymerGapParams>;

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts

@@ -35,7 +35,7 @@ export declare const PolymerTraceParams: {
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -43,7 +43,7 @@ export declare const PolymerTraceParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PolymerTraceParams = typeof PolymerTraceParams;
 export declare function PolymerTraceVisual(materialId: number): UnitsVisual<PolymerTraceParams>;

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts

@@ -23,7 +23,7 @@ export declare const PolymerTubeParams: {
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -31,7 +31,7 @@ export declare const PolymerTubeParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PolymerTubeParams = typeof PolymerTubeParams;
 export declare function PolymerTubeVisual(materialId: number): UnitsVisual<PolymerTubeParams>;

package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts

@@ -12,27 +12,27 @@ import { Loci } from '../../../../mol-model/loci';
 import { Interval } from '../../../../mol-data/int';
 import { StructureGroup } from './common';
 export declare const BondParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
 };
 export declare const DefaultBondProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
 }>;
 export declare type BondProps = typeof DefaultBondProps;
 export declare const BondCylinderParams: {
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
@@ -47,11 +47,11 @@ export declare const BondCylinderParams: {
 };
 export declare const DefaultBondCylinderProps: PD.Values<{
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
@@ -66,22 +66,22 @@ export declare const DefaultBondCylinderProps: PD.Values<{
 }>;
 export declare type BondCylinderProps = typeof DefaultBondCylinderProps;
 export declare const BondLineParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
 };
 export declare const DefaultBondLineProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
-    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
+    multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     aromaticDashCount: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts

@@ -29,7 +29,7 @@ export declare const UnitKindInfo: {
     gaussians: {};
 };
 export declare type UnitKind = keyof typeof UnitKindInfo;
-export declare const UnitKindOptions: ["spheres" | "atomic" | "gaussians", string][];
+export declare const UnitKindOptions: ["spheres" | "gaussians" | "atomic", string][];
 export declare function includesUnitKind(unitKinds: UnitKind[], unit: Unit): boolean;
 export declare function getVolumeSliceInfo(box: Box3D, resolution: number, maxCells?: number): {
     area: number;
@@ -48,7 +48,7 @@ export declare function ensureReasonableResolution<T>(box: Box3D, props: {
 } & T & {
     resolution: number;
 };
-export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation | import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation;
+export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation;
 export declare const CommonSurfaceParams: {
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;

package/lib/commonjs/mol-repr/visual.d.ts

@@ -16,6 +16,7 @@ import { Overpaint } from '../mol-theme/overpaint';
 import { Interval } from '../mol-data/int';
 import { Transparency } from '../mol-theme/transparency';
 import { Clipping } from '../mol-theme/clipping';
+import { Geometry } from '../mol-geo/geometry/geometry';
 export interface VisualContext {
     readonly runtime: RuntimeContext;
     readonly webgl?: WebGLContext;
@@ -25,6 +26,7 @@ interface Visual<D, P extends PD.Params> {
     /** Number of addressable groups in all instances of the visual */
     readonly groupCount: number;
     readonly renderObject: GraphicsRenderObject | undefined;
+    readonly geometryVersion: number;
     createOrUpdate: (ctx: VisualContext, theme: Theme, props: PD.Values<P>, data?: D) => Promise<void> | void;
     getLoci: (pickingId: PickingId) => Loci;
     mark: (loci: Loci, action: MarkerAction) => boolean;
@@ -33,26 +35,32 @@ interface Visual<D, P extends PD.Params> {
     setPickable: (pickable: boolean) => void;
     setColorOnly: (colorOnly: boolean) => void;
     setTransform: (matrix?: Mat4, instanceMatrices?: Float32Array | null) => void;
-    setOverpaint: (overpaint: Overpaint) => void;
-    setTransparency: (transparency: Transparency) => void;
+    setOverpaint: (overpaint: Overpaint, webgl?: WebGLContext) => void;
+    setTransparency: (transparency: Transparency, webgl?: WebGLContext) => void;
     setClipping: (clipping: Clipping) => void;
     destroy: () => void;
     mustRecreate?: (data: D, props: PD.Values<P>, webgl?: WebGLContext) => boolean;
 }
 declare namespace Visual {
-    type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
-    function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
-    function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
-    function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
-    function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
-    type PreviousMark = {
+    export type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
+    export function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
+    export function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
+    export function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
+    export function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
+    export type PreviousMark = {
         loci: Loci;
         action: MarkerAction;
         status: MarkerInfo['status'];
     };
-    function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
-    function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean): void;
-    function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean): void;
-    function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
-    function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
+    type SmoothingContext = {
+        geometry: Geometry;
+        props: PD.Values<any>;
+        webgl?: WebGLContext;
+    };
+    export function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
+    export function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export {};
 }

package/lib/commonjs/mol-repr/visual.js

@@ -17,6 +17,9 @@ var int_1 = require("../mol-data/int");
 var transparency_data_1 = require("../mol-geo/geometry/transparency-data");
 var clipping_data_1 = require("../mol-geo/geometry/clipping-data");
 var marker_data_1 = require("../mol-geo/geometry/marker-data");
+var base_1 = require("../mol-geo/geometry/base");
+var color_smoothing_1 = require("../mol-geo/geometry/mesh/color-smoothing");
+var color_smoothing_2 = require("../mol-geo/geometry/texture-mesh/color-smoothing");
 var Visual;
 (function (Visual) {
     function setVisibility(renderObject, visible) {
@@ -106,10 +109,10 @@ var Visual;
         return changed;
     }
     Visual.mark = mark;
-    function setOverpaint(renderObject, overpaint, lociApply, clear) {
+    function setOverpaint(renderObject, overpaint, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tOverpaint = _a.tOverpaint, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tOverpaint = _a.tOverpaint, dOverpaintType = _a.dOverpaintType, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size
         (0, overpaint_data_1.createOverpaint)(overpaint.layers.length ? count : 0, renderObject.values);
@@ -118,7 +121,7 @@ var Visual;
         if (clear)
             (0, overpaint_data_1.clearOverpaint)(array, 0, count);
         var _loop_1 = function (i, il) {
-            var _b = overpaint.layers[i], loci = _b.loci, color = _b.color, clear_1 = _b.clear;
+            var _d = overpaint.layers[i], loci = _d.loci, color = _d.color, clear_1 = _d.clear;
             var apply = function (interval) {
                 var start = int_1.Interval.start(interval);
                 var end = int_1.Interval.end(interval);
@@ -132,12 +135,34 @@ var Visual;
             _loop_1(i, il);
         }
         mol_util_1.ValueCell.update(tOverpaint, tOverpaint.ref.value);
+        mol_util_1.ValueCell.updateIfChanged(dOverpaintType, 'groupInstance');
+        if (overpaint.layers.length === 0)
+            return;
+        if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, overpaintTexture = _b.overpaintTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_1.applyMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, overpaintTexture = _c.overpaintTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_2.applyTextureMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setOverpaint = setOverpaint;
-    function setTransparency(renderObject, transparency, lociApply, clear) {
+    function setTransparency(renderObject, transparency, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tTransparency = _a.tTransparency, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tTransparency = _a.tTransparency, dTransparencyType = _a.dTransparencyType, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size and variant
         (0, transparency_data_1.createTransparency)(transparency.layers.length ? count : 0, renderObject.values);
@@ -146,7 +171,7 @@ var Visual;
         if (clear)
             (0, transparency_data_1.clearTransparency)(array, 0, count);
         var _loop_2 = function (i, il) {
-            var _b = transparency.layers[i], loci = _b.loci, value = _b.value;
+            var _d = transparency.layers[i], loci = _d.loci, value = _d.value;
             var apply = function (interval) {
                 var start = int_1.Interval.start(interval);
                 var end = int_1.Interval.end(interval);
@@ -159,6 +184,28 @@ var Visual;
         }
         mol_util_1.ValueCell.update(tTransparency, tTransparency.ref.value);
         mol_util_1.ValueCell.updateIfChanged(transparencyAverage, (0, transparency_data_1.getTransparencyAverage)(array, count));
+        mol_util_1.ValueCell.updateIfChanged(dTransparencyType, 'groupInstance');
+        if (transparency.layers.length === 0)
+            return;
+        if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, transparencyTexture = _b.transparencyTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_1.applyMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, transparencyTexture = _c.transparencyTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_2.applyTextureMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setTransparency = setTransparency;
     function setClipping(renderObject, clipping, lociApply, clear) {

package/lib/commonjs/mol-repr/visual.js.map

@@ -1 +1 @@
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