npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/mol-plugin-ui/structure/superposition.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-ui/structure/volume.js CHANGED Viewed

@@ -194,7 +194,7 @@ var VolumeSourceControls = /** @class */ (function (_super) {
         get: function () {
             var _a;
             if (this.state.loadingLabel)
-                return "Loading " + this.state.loadingLabel + "...";
+                return "Loading ".concat(this.state.loadingLabel, "...");
             var selected = this.plugin.managers.volume.hierarchy.selection;
             if (!selected)
                 return 'Nothing Selected';
@@ -314,7 +314,7 @@ var VolumeRepresentationControls = /** @class */ (function (_super) {
     VolumeRepresentationControls.prototype.render = function () {
         var _a, _b, _c;
         var repr = this.props.representation.cell;
-        return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ noOverflow: true, className: 'msp-control-button-label', title: ((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) + ". Click to focus.", onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [(_b = repr.obj) === null || _b === void 0 ? void 0 : _b.label, _jsx("small", __assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: (_c = repr.obj) === null || _c === void 0 ? void 0 : _c.description }), void 0)] }), void 0), _jsx(IconButton, { svg: repr.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: (repr.state.isHidden ? 'Show' : 'Hide') + " component", small: true, className: 'msp-form-control', flex: true }, void 0), _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true }, void 0), _jsx(IconButton, { svg: MoreHorizSvg, onClick: this.toggleUpdate, title: 'Actions', toggleState: this.state.action === 'update' }, void 0)] }), void 0), this.state.action === 'update' && !!repr.parent && _jsx("div", __assign({ style: { marginBottom: '6px' }, className: 'msp-accent-offset' }, { children: _jsx(UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', noMargin: true }, void 0) }), void 0)] }, void 0);
+        return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ noOverflow: true, className: 'msp-control-button-label', title: "".concat((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [(_b = repr.obj) === null || _b === void 0 ? void 0 : _b.label, _jsx("small", __assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: (_c = repr.obj) === null || _c === void 0 ? void 0 : _c.description }), void 0)] }), void 0), _jsx(IconButton, { svg: repr.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(repr.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }, void 0), _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true }, void 0), _jsx(IconButton, { svg: MoreHorizSvg, onClick: this.toggleUpdate, title: 'Actions', toggleState: this.state.action === 'update' }, void 0)] }), void 0), this.state.action === 'update' && !!repr.parent && _jsx("div", __assign({ style: { marginBottom: '6px' }, className: 'msp-accent-offset' }, { children: _jsx(UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', noMargin: true }, void 0) }), void 0)] }, void 0);
     };
     return VolumeRepresentationControls;
 }(PurePluginUIComponent));

package/lib/mol-plugin-ui/structure/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-repr/representation.d.ts CHANGED Viewed

@@ -90,6 +90,7 @@ interface Representation<D, P extends PD.Params = {}, S extends Representation.S
     /** Number of addressable groups in all visuals of the representation */
     readonly groupCount: number;
     readonly renderObjects: ReadonlyArray<GraphicsRenderObject>;
+    readonly geometryVersion: number;
     readonly props: Readonly<PD.Values<P>>;
     readonly params: Readonly<P>;
     readonly state: Readonly<S>;
@@ -146,6 +147,14 @@ declare namespace Representation {
     type Def<D, P extends PD.Params = {}, S extends State = State> = {
         [k: string]: RepresentationFactory<D, P, S>;
     };
+    class GeometryState {
+        private curr;
+        private next;
+        private _version;
+        get version(): number;
+        add(id: number, version: number): void;
+        snapshot(): void;
+    }
     function createMulti<D, P extends PD.Params = {}, S extends State = State>(label: string, ctx: RepresentationContext, getParams: RepresentationParamsGetter<D, P>, stateBuilder: StateBuilder<S>, reprDefs: Def<D, P>): Representation<D, P, S>;
     function fromRenderObject(label: string, renderObject: GraphicsRenderObject): Representation<GraphicsRenderObject, BaseGeometry.Params>;
 }

package/lib/mol-repr/representation.js CHANGED Viewed

@@ -19,6 +19,8 @@ import { getQualityProps } from './util';
 import { BaseGeometry } from '../mol-geo/geometry/base';
 import { Visual } from './visual';
 import { Clipping } from '../mol-theme/clipping';
+import { SetUtils } from '../mol-util/set';
+import { cantorPairing } from '../mol-data/util';
 export var RepresentationProvider;
 (function (RepresentationProvider) {
     function getDetaultParams(r, ctx, data) {
@@ -59,7 +61,7 @@ var RepresentationRegistry = /** @class */ (function () {
     ;
     RepresentationRegistry.prototype.add = function (provider) {
         if (this._map.has(provider.name)) {
-            throw new Error(provider.name + " already registered.");
+            throw new Error("".concat(provider.name, " already registered."));
         }
         this._list.push({ name: provider.name, provider: provider });
         this._map.set(provider.name, provider);
@@ -67,7 +69,7 @@ var RepresentationRegistry = /** @class */ (function () {
     };
     RepresentationRegistry.prototype.getName = function (provider) {
         if (!this._name.has(provider))
-            throw new Error("'" + provider.label + "' is not a registered represenatation provider.");
+            throw new Error("'".concat(provider.label, "' is not a registered represenatation provider."));
         return this._name.get(provider);
     };
     RepresentationRegistry.prototype.remove = function (provider) {
@@ -143,7 +145,7 @@ var Representation;
     Representation.updateState = updateState;
     Representation.StateBuilder = { create: createState, update: updateState };
     Representation.Empty = {
-        label: '', groupCount: 0, renderObjects: [], props: {}, params: {}, updated: new Subject(), state: createState(), theme: Theme.createEmpty(),
+        label: '', groupCount: 0, renderObjects: [], geometryVersion: -1, props: {}, params: {}, updated: new Subject(), state: createState(), theme: Theme.createEmpty(),
         createOrUpdate: function () { return Task.constant('', undefined); },
         setState: function () { },
         setTheme: function () { },
@@ -151,10 +153,38 @@ var Representation;
         mark: function () { return false; },
         destroy: function () { }
     };
+    var GeometryState = /** @class */ (function () {
+        function GeometryState() {
+            this.curr = new Set();
+            this.next = new Set();
+            this._version = -1;
+        }
+        Object.defineProperty(GeometryState.prototype, "version", {
+            get: function () {
+                return this._version;
+            },
+            enumerable: false,
+            configurable: true
+        });
+        GeometryState.prototype.add = function (id, version) {
+            this.next.add(cantorPairing(id, version));
+        };
+        GeometryState.prototype.snapshot = function () {
+            var _a;
+            if (!SetUtils.areEqual(this.curr, this.next)) {
+                this._version += 1;
+            }
+            _a = [this.next, this.curr], this.curr = _a[0], this.next = _a[1];
+            this.next.clear();
+        };
+        return GeometryState;
+    }());
+    Representation.GeometryState = GeometryState;
     function createMulti(label, ctx, getParams, stateBuilder, reprDefs) {
         var _this = this;
         var version = 0;
         var updated = new Subject();
+        var geometryState = new GeometryState();
         var currentState = stateBuilder.create();
         var currentTheme = Theme.createEmpty();
         var currentParams;
@@ -194,6 +224,7 @@ var Representation;
                 }
                 return renderObjects;
             },
+            get geometryVersion() { return geometryState.version; },
             get props() { return currentProps; },
             get params() { return currentParams; },
             createOrUpdate: function (props, data) {
@@ -207,7 +238,7 @@ var Representation;
                 var qualityProps = getQualityProps(Object.assign({}, currentProps, props), currentData);
                 Object.assign(currentProps, props, qualityProps);
                 var visuals = currentProps.visuals;
-                return Task.create("Creating or updating '" + label + "' representation", function (runtime) { return __awaiter(_this, void 0, void 0, function () {
+                return Task.create("Creating or updating '".concat(label, "' representation"), function (runtime) { return __awaiter(_this, void 0, void 0, function () {
                     var i, il;
                     return __generator(this, function (_a) {
                         switch (_a.label) {
@@ -215,16 +246,20 @@ var Representation;
                                 i = 0, il = reprList.length;
                                 _a.label = 1;
                             case 1:
-                                if (!(i < il)) return [3 /*break*/, 4];
+                                if (!(i < il)) return [3 /*break*/, 5];
                                 if (!(!visuals || visuals.includes(reprMap[i]))) return [3 /*break*/, 3];
                                 return [4 /*yield*/, reprList[i].createOrUpdate(currentProps, currentData).runInContext(runtime)];
                             case 2:
                                 _a.sent();
                                 _a.label = 3;
                             case 3:
+                                geometryState.add(i, reprList[i].geometryVersion);
+                                _a.label = 4;
+                            case 4:
                                 ++i;
                                 return [3 /*break*/, 1];
-                            case 4:
+                            case 5:
+                                geometryState.snapshot();
                                 updated.next(version++);
                                 return [2 /*return*/];
                         }
@@ -254,7 +289,7 @@ var Representation;
             setState: function (state) {
                 stateBuilder.update(currentState, state);
                 for (var i = 0, il = reprList.length; i < il; ++i) {
-                    reprList[i].setState(currentState);
+                    reprList[i].setState(state); // only set the new (partial) state
                 }
             },
             setTheme: function (theme) {
@@ -275,6 +310,7 @@ var Representation;
         var _this = this;
         var version = 0;
         var updated = new Subject();
+        var geometryState = new GeometryState();
         var currentState = Representation.createState();
         var currentTheme = Theme.createEmpty();
         var currentParams = PD.clone(BaseGeometry.Params);
@@ -284,15 +320,18 @@ var Representation;
             updated: updated,
             get groupCount() { return renderObject.values.uGroupCount.ref.value; },
             get renderObjects() { return [renderObject]; },
+            get geometryVersion() { return geometryState.version; },
             get props() { return currentProps; },
             get params() { return currentParams; },
             createOrUpdate: function (props) {
                 if (props === void 0) { props = {}; }
                 var qualityProps = getQualityProps(Object.assign({}, currentProps, props));
                 Object.assign(currentProps, props, qualityProps);
-                return Task.create("Updating '" + label + "' representation", function (runtime) { return __awaiter(_this, void 0, void 0, function () {
+                return Task.create("Updating '".concat(label, "' representation"), function (runtime) { return __awaiter(_this, void 0, void 0, function () {
                     return __generator(this, function (_a) {
                         // TODO
+                        geometryState.add(0, renderObject.id);
+                        geometryState.snapshot();
                         updated.next(version++);
                         return [2 /*return*/];
                     });

package/lib/mol-repr/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-repr/shape/loci/angle.d.ts CHANGED Viewed

@@ -34,7 +34,7 @@ export declare const AngleParams: {
     fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     ignoreLight: PD.BooleanParam;
     sectorOpacity: PD.Numeric;
     color: PD.Color;

package/lib/mol-repr/shape/loci/angle.js CHANGED Viewed

@@ -81,7 +81,7 @@ function getCircle(state, segmentLength) {
 }
 var tmpState = getAngleState();
 function getAngleName(data) {
-    return data.triples.length === 1 ? "Angle " + angleLabel(data.triples[0], { measureOnly: true }) : data.triples.length + " Angles";
+    return data.triples.length === 1 ? "Angle ".concat(angleLabel(data.triples[0], { measureOnly: true })) : "".concat(data.triples.length, " Angles");
 }
 //
 function buildVectorsLines(data, props, lines) {
@@ -153,7 +153,7 @@ function buildText(data, props, text) {
         Vec3.setMagnitude(tmpVec, tmpVec, tmpState.radius);
         Vec3.add(tmpVec, tmpState.sphereB.center, tmpVec);
         var angle = radToDeg(tmpState.angle).toFixed(2);
-        var label = props.customText || angle + "\u00B0";
+        var label = props.customText || "".concat(angle, "\u00B0");
         var radius = Math.max(2, tmpState.sphereA.radius, tmpState.sphereB.radius, tmpState.sphereC.radius);
         var scale = radius / 2;
         builder.add(label, tmpVec[0], tmpVec[1], tmpVec[2], 0.1, scale, i);

package/lib/mol-repr/shape/loci/angle.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-repr/shape/loci/common.d.ts CHANGED Viewed

@@ -34,6 +34,6 @@ export declare const LociLabelTextParams: {
     fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type LociLabelTextParams = typeof LociLabelTextParams;

package/lib/mol-repr/shape/loci/dihedral.d.ts CHANGED Viewed

@@ -34,7 +34,7 @@ export declare const DihedralParams: {
     fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     ignoreLight: PD.BooleanParam;
     sectorOpacity: PD.Numeric;
     color: PD.Color;

package/lib/mol-repr/shape/loci/dihedral.js CHANGED Viewed

@@ -116,7 +116,7 @@ function getCircle(state, segmentLength) {
 }
 var tmpState = getDihedralState();
 function getDihedralName(data) {
-    return data.quads.length === 1 ? "Dihedral " + dihedralLabel(data.quads[0], { measureOnly: true }) : data.quads.length + " Dihedrals";
+    return data.quads.length === 1 ? "Dihedral ".concat(dihedralLabel(data.quads[0], { measureOnly: true })) : "".concat(data.quads.length, " Dihedrals");
 }
 //
 function buildVectorsLines(data, props, lines) {
@@ -234,7 +234,7 @@ function buildText(data, props, text) {
         var angle = radToDeg(tmpState.angle).toFixed(2);
         if (angle === '-0.00')
             angle = '0.00';
-        var label = props.customText || angle + "\u00B0";
+        var label = props.customText || "".concat(angle, "\u00B0");
         var radius = Math.max(2, tmpState.sphereA.radius, tmpState.sphereB.radius, tmpState.sphereC.radius, tmpState.sphereD.radius);
         var scale = radius / 2;
         builder.add(label, tmpVec[0], tmpVec[1], tmpVec[2], 0.1, scale, i);

package/lib/mol-repr/shape/loci/dihedral.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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