molstar 2.3.7 → 2.4.1

package/lib/mol-model/structure/structure/symmetry.js.map

@@ -1 +1 @@
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package/lib/mol-model/structure/structure/unit.d.ts

@@ -181,8 +181,8 @@ declare namespace Unit {
     export function areOperatorsEqual(a: Unit, b: Unit): boolean;
     export function areConformationsEqual(a: Unit, b: Unit): boolean;
     export function isSameConformation(u: Unit, model: Model): boolean;
-    export function getModelConformationOfKind(kind: Unit.Kind, model: Model): CoarseSphereConformation | CoarseGaussianConformation | import("../model/properties/atomic").AtomicConformation;
-    export function getConformation(u: Unit): CoarseSphereConformation | CoarseGaussianConformation | import("../model/properties/atomic").AtomicConformation;
+    export function getModelConformationOfKind(kind: Unit.Kind, model: Model): import("../model/properties/atomic").AtomicConformation | CoarseSphereConformation | CoarseGaussianConformation;
+    export function getConformation(u: Unit): import("../model/properties/atomic").AtomicConformation | CoarseSphereConformation | CoarseGaussianConformation;
     export function getModelHierarchyOfKind(kind: Unit.Kind, model: Model): import("../model/properties/atomic").AtomicHierarchy | CoarseElements;
     export function getHierarchy(u: Unit): import("../model/properties/atomic").AtomicHierarchy | CoarseElements;
     export {};

package/lib/mol-model/structure/structure/util/superposition-db-mapping.js

@@ -109,7 +109,7 @@ function buildIndex(structure, index, sI) {
                 var rI = residueOffset[eI];
                 if (!dbName[rI])
                     continue;
-                var key = dbName[rI] + "-" + accession[rI] + "-" + num[rI];
+                var key = "".concat(dbName[rI], "-").concat(accession[rI], "-").concat(num[rI]);
                 if (!index.has(key)) {
                     index.set(key, { key: key, pivots: (_a = {}, _a[sI] = [unit, eI, elements[residueSegment.end]], _a) });
                 }

package/lib/mol-model/structure/structure/util/superposition-db-mapping.js.map

@@ -1 +1 @@
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package/lib/mol-model/volume/volume.js

@@ -52,8 +52,8 @@ export var Volume;
         IsoValue.toRelative = toRelative;
         function toString(value) {
             return value.kind === 'relative'
-                ? value.relativeValue.toFixed(2) + " \u03C3"
-                : "" + value.absoluteValue.toPrecision(4);
+                ? "".concat(value.relativeValue.toFixed(2), " \u03C3")
+                : "".concat(value.absoluteValue.toPrecision(4));
         }
         IsoValue.toString = toString;
     })(IsoValue = Volume.IsoValue || (Volume.IsoValue = {}));

package/lib/mol-model/volume/volume.js.map

@@ -1 +1 @@
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package/lib/mol-model-formats/shape/ply.d.ts

@@ -17,11 +17,11 @@ export declare const PlyShapeParams: {
         red: string;
         green: string;
         blue: string;
-    }>, "vertex"> | PD.NamedParams<PD.Normalize<{
+    }>, "material"> | PD.NamedParams<PD.Normalize<{
         red: string;
         green: string;
         blue: string;
-    }>, "material">>;
+    }>, "vertex">>;
     grouping: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "none"> | PD.NamedParams<PD.Normalize<{
         group: string;
     }>, "vertex">>;
@@ -31,7 +31,7 @@ export declare const PlyShapeParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PlyShapeParams = typeof PlyShapeParams;
 export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapeProvider<PlyFile, Mesh, {
@@ -41,11 +41,11 @@ export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapePr
         red: string;
         green: string;
         blue: string;
-    }>, "vertex"> | PD.NamedParams<PD.Normalize<{
+    }>, "material"> | PD.NamedParams<PD.Normalize<{
         red: string;
         green: string;
         blue: string;
-    }>, "material">>;
+    }>, "vertex">>;
     grouping: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "none"> | PD.NamedParams<PD.Normalize<{
         group: string;
     }>, "vertex">>;
@@ -55,5 +55,5 @@ export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapePr
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }>>;

package/lib/mol-model-formats/shape/ply.js

@@ -217,7 +217,7 @@ function createShape(plyFile, mesh, coloring, grouping) {
         return Color.fromRgb(red.value(idx), green.value(idx), blue.value(idx));
     }, function () { return 1; }, // size: constant
     function (groupId) {
-        return label + " " + ids[groupId];
+        return "".concat(label, " ").concat(ids[groupId]);
     });
 }
 function makeShapeGetter() {

package/lib/mol-model-formats/shape/ply.js.map

@@ -1 +1 @@
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package/lib/mol-model-formats/structure/basic/atomic.js

@@ -119,9 +119,9 @@ function createChainOperatorMappingAndSubstituteNames(hierarchy, format) {
         });
         var suffix = entries.suffix.value(i);
         var label = entries.label_asym_id.value(i);
-        labelMap.set("" + label + suffix, { name: label, operator: operator });
+        labelMap.set("".concat(label).concat(suffix), { name: label, operator: operator });
         var auth = entries.auth_asym_id.value(i);
-        authMap.set("" + auth + suffix, auth);
+        authMap.set("".concat(auth).concat(suffix), auth);
     }
     var _a = hierarchy.chains, label_asym_id = _a.label_asym_id, auth_asym_id = _a.auth_asym_id;
     var mappedLabel = new Array(label_asym_id.rowCount);

package/lib/mol-model-formats/structure/basic/atomic.js.map

@@ -1 +1 @@
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package/lib/mol-model-formats/structure/basic/properties.js

@@ -11,7 +11,7 @@ import { Table } from '../../../mol-data/db';
 function getMissingResidues(data) {
     var map = new Map();
     var getKey = function (model_num, asym_id, seq_id) {
-        return model_num + "|" + asym_id + "|" + seq_id;
+        return "".concat(model_num, "|").concat(asym_id, "|").concat(seq_id);
     };
     var c = data.pdbx_unobs_or_zero_occ_residues;
     for (var i = 0, il = c._rowCount; i < il; ++i) {
@@ -61,7 +61,7 @@ function getSaccharideComponentMap(data) {
                     map.set(comp_id.value(i), saccharideComp);
                 }
                 else {
-                    console.warn("Unknown SNFG name '" + snfgName + "'");
+                    console.warn("Unknown SNFG name '".concat(snfgName, "'"));
                 }
             }
         }

package/lib/mol-model-formats/structure/basic/properties.js.map

@@ -1 +1 @@
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+{"version":3,"file":"properties.js","sourceRoot":"","sources":["../../../../src/mol-model-formats/structure/basic/properties.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,EAAE,eAAe,EAAgB,2BAA2B,EAAE,MAAM,0CAA0C,CAAC;AACtH,OAAO,EAA+C,kBAAkB,EAAE,mBAAmB,EAAE,0BAA0B,EAAE,MAAM,gEAAgE,CAAC;AAClM,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAErD,OAAO,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAE7C,SAAS,kBAAkB,CAAC,IAAe;IACvC,IAAM,GAAG,GAAG,IAAI,GAAG,EAA0B,CAAC;IAC9C,IAAM,MAAM,GAAG,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;QAC9D,OAAO,UAAG,SAAS,cAAI,OAAO,cAAI,MAAM,CAAE,CAAC;IAC/C,CAAC,CAAC;IAEF,IAAM,CAAC,GAAG,IAAI,CAAC,+BAA+B,CAAC;IAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAC3C,IAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAChG,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,YAAY,EAAE,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,cAAc,EAAE,CAAC,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;KACtG;IAED,OAAO;QACH,GAAG,EAAE,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;YACpD,OAAO,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,CAAC;QACvD,CAAC;QACD,GAAG,EAAE,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;YACpD,OAAO,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,CAAC;QACvD,CAAC;QACD,IAAI,EAAE,GAAG,CAAC,IAAI;KACjB,CAAC;AACN,CAAC;AAED,SAAS,uBAAuB,CAAC,IAAe;IAC5C,IAAM,GAAG,GAAG,IAAI,GAAG,EAA6B,CAAC;IAEjD,IAAI,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,CAAC,EAAE;QACtB,IAAA,EAAE,GAAK,IAAI,CAAC,SAAS,GAAnB,CAAoB;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAC;SACzD;KACJ;SAAM;QACH,IAAM,WAAW,GAAG,uBAAuB,CAAC,IAAI,CAAC,CAAC;QAClD,WAAW,CAAC,OAAO,CAAC,UAAA,CAAC;YACjB,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,2BAA2B,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/C,CAAC,CAAC,CAAC;KACN;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,yBAAyB,CAAC,IAAe;IAC9C,IAAM,GAAG,GAAG,IAAI,GAAG,EAA+B,CAAC;IAEnD,IAAI,IAAI,CAAC,yBAAyB,CAAC,SAAS,GAAG,CAAC,EAAE;QAC9C,yDAAyD;QACzD,yEAAyE;QACzE,mDAAmD;QAC7C,IAAA,KAAgC,IAAI,CAAC,yBAAyB,EAA5D,OAAO,aAAA,EAAE,IAAI,UAAA,EAAE,UAAU,gBAAmC,CAAC;QACrE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAChD,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,0BAA0B;gBAC5C,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,kBAAkB,CAAC,8CAA8C;cACrF;gBACE,IAAM,QAAQ,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;gBACrC,IAAM,cAAc,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;gBACxD,IAAI,cAAc,EAAE;oBAChB,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;iBAC7C;qBAAM;oBACH,OAAO,CAAC,IAAI,CAAC,6BAAsB,QAAQ,MAAG,CAAC,CAAC;iBACnD;aACJ;SACJ;KACJ;IAED,IAAI,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,CAAC,EAAE;QACxB,IAAA,KAAe,IAAI,CAAC,SAAS,EAA3B,EAAE,QAAA,EAAE,IAAI,UAAmB,CAAC;QACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,IAAM,GAAG,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACxB,IAAI,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC;gBAAE,SAAS;YAC3B,IAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YAC5B,IAAI,mBAAmB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBAC9B,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,mBAAmB,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC,CAAC;aAC/C;iBAAM,IAAI,eAAe,CAAC,KAAK,EAAE,GAAG,CAAC,uBAA4B,EAAE;gBAChE,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,0BAA0B,CAAC,CAAC;aAC5C;SACJ;KACJ;SAAM;QACH,IAAM,aAAW,GAAG,uBAAuB,CAAC,IAAI,CAAC,CAAC;QAClD,mBAAmB,CAAC,OAAO,CAAC,UAAC,CAAC,EAAE,CAAC;YAC7B,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,aAAW,CAAC,GAAG,CAAC,CAAC,CAAC;gBAAE,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACzD,CAAC,CAAC,CAAC;KACN;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,IAAM,uBAAuB,GAAG,QAAQ,CAAC,UAAC,IAAe;IACrD,IAAM,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;IAChC,IAAA,KAAkC,IAAI,CAAC,SAAS,EAA9C,aAAa,mBAAA,EAAE,YAAY,kBAAmB,CAAC;IACvD,IAAM,OAAO,GAAG,aAAa,CAAC,SAAS,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,YAAY,CAAC;IACvE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAChD,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;KACrC;IACD,OAAO,WAAW,CAAC;AACvB,CAAC,CAAC,CAAC;AAGH,SAAS,gBAAgB,CAAC,IAAe;IACrC,IAAM,GAAG,GAAG,IAAI,GAAG,EAAsB,CAAC;IAEpC,IAAA,KAAmD,IAAI,CAAC,SAAS,EAA/D,aAAa,mBAAA,EAAE,YAAY,kBAAA,EAAE,eAAe,qBAAmB,CAAC;IACxE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACtD,IAAM,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAClC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE;YACd,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE;gBACR,EAAE,IAAA;gBACF,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;aACtC,CAAC,CAAC;SACN;KACJ;IAED,IAAI,IAAI,CAAC,WAAW,CAAC,SAAS,GAAG,CAAC,EAAE;QAC1B,IAAA,KAAoB,IAAI,CAAC,WAAW,EAAlC,EAAE,QAAA,EAAE,SAAS,eAAqB,CAAC;QAC3C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,IAAM,GAAG,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACxB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAA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package/lib/mol-model-formats/structure/basic/schema.d.ts

@@ -69,8 +69,8 @@ export declare const BasicSchema: {
     };
     entity_poly: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
-        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
         pdbx_strand_id: import("../../../mol-data/db/column").Column.Schema.List<string>;
         pdbx_seq_one_letter_code: import("../../../mol-data/db/column").Column.Schema.Str;
@@ -79,7 +79,7 @@ export declare const BasicSchema: {
     };
     entity_poly_seq: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         mon_id: import("../../../mol-data/db/column").Column.Schema.Str;
         num: import("../../../mol-data/db/column").Column.Schema.Int;
     };
@@ -88,11 +88,11 @@ export declare const BasicSchema: {
         type: import("../../../mol-data/db/column").Column.Schema.Aliased<"oligosaccharide">;
     };
     chem_comp: {
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: import("../../../mol-data/db/column").Column.Schema.Str;
         formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
         id: import("../../../mol-data/db/column").Column.Schema.Str;
-        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: import("../../../mol-data/db/column").Column.Schema.Str;
         pdbx_synonyms: import("../../../mol-data/db/column").Column.Schema.List<string>;
     };
@@ -156,7 +156,7 @@ export declare const BasicSchema: {
     pdbx_unobs_or_zero_occ_residues: {
         id: import("../../../mol-data/db/column").Column.Schema.Int;
         polymer_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
-        occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"0" | "1">;
+        occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"1" | "0">;
         PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
         auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
         auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;

package/lib/mol-model-formats/structure/common/component.d.ts

@@ -19,29 +19,29 @@ export declare class ComponentBuilder {
     private getType;
     has(compId: string): boolean;
     get(compId: string): Table.Row<Pick<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "id" | "type" | "name">> | undefined;
+    }, "name" | "id" | "type">> | undefined;
     add(compId: string, index: number): Table.Row<Pick<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "id" | "type" | "name">>;
+    }, "name" | "id" | "type">>;
     getChemCompTable(): Table<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
     }>;

package/lib/mol-model-formats/structure/common/entity.js

@@ -19,7 +19,7 @@ var EntityBuilder = /** @class */ (function () {
     }
     EntityBuilder.prototype.set = function (type, description) {
         this.count += 1;
-        this.ids.push("" + this.count);
+        this.ids.push("".concat(this.count));
         this.types.push(type);
         this.descriptions.push([description]);
     };
@@ -27,7 +27,7 @@ var EntityBuilder = /** @class */ (function () {
         if (moleculeType === 2 /* Water */) {
             if (this.waterId === undefined) {
                 this.set('water', (options === null || options === void 0 ? void 0 : options.customName) || 'Water');
-                this.waterId = "" + this.count;
+                this.waterId = "".concat(this.count);
             }
             return this.waterId;
         }
@@ -37,8 +37,8 @@ var EntityBuilder = /** @class */ (function () {
             }
             else {
                 if (!this.chainMap.has(chainId)) {
-                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer " + (this.chainMap.size + 1));
-                    this.chainMap.set(chainId, "" + this.count);
+                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer ".concat(this.chainMap.size + 1));
+                    this.chainMap.set(chainId, "".concat(this.count));
                 }
                 return this.chainMap.get(chainId);
             }
@@ -46,7 +46,7 @@ var EntityBuilder = /** @class */ (function () {
         else {
             if (!this.heteroMap.has(compId)) {
                 this.set('non-polymer', (options === null || options === void 0 ? void 0 : options.customName) || this.namesMap.get(compId) || compId);
-                this.heteroMap.set(compId, "" + this.count);
+                this.heteroMap.set(compId, "".concat(this.count));
             }
             return this.heteroMap.get(compId);
         }
@@ -63,7 +63,7 @@ var EntityBuilder = /** @class */ (function () {
             var _a = compounds[i], chains = _a.chains, description = _a.description;
             this.set('polymer', description);
             for (var j = 0, jl = chains.length; j < jl; ++j) {
-                this.compoundsMap.set(chains[j], "" + this.count);
+                this.compoundsMap.set(chains[j], "".concat(this.count));
             }
         }
     };

package/lib/mol-model-formats/structure/common/entity.js.map

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