npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/mol-canvas3d/helper/handle-helper.js.map CHANGED Viewed

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1	+ 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package/lib/mol-canvas3d/passes/draw.js CHANGED Viewed

@@ -15,11 +15,11 @@ import { ValueCell } from '../../mol-util';
 import { Vec2 } from '../../mol-math/linear-algebra';
 import { quad_vert } from '../../mol-gl/shader/quad.vert';
 import { depthMerge_frag } from '../../mol-gl/shader/depth-merge.frag';
-import { copy_frag } from '../../mol-gl/shader/copy.frag';
 import { StereoCamera } from '../camera/stereo';
 import { WboitPass } from './wboit';
 import { AntialiasingPass, PostprocessingPass } from './postprocessing';
 import { MarkingPass } from './marking';
+import { createCopyRenderable } from '../../mol-gl/compute/util';
 var DepthMergeSchema = __assign(__assign({}, QuadSchema), { tDepthPrimitives: TextureSpec('texture', 'depth', 'ushort', 'nearest'), tDepthVolumes: TextureSpec('texture', 'depth', 'ushort', 'nearest'), uTexSize: UniformSpec('v2'), dPackedDepth: DefineSpec('boolean') });
 var DepthMergeShaderCode = ShaderCode('depth-merge', quad_vert, depthMerge_frag);
 function getDepthMergeRenderable(ctx, depthTexturePrimitives, depthTextureVolumes, packedDepth) {
@@ -28,14 +28,6 @@ function getDepthMergeRenderable(ctx, depthTexturePrimitives, depthTextureVolume
     var renderItem = createComputeRenderItem(ctx, 'triangles', DepthMergeShaderCode, schema, values);
     return createComputeRenderable(renderItem, values);
 }
-var CopySchema = __assign(__assign({}, QuadSchema), { tColor: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: UniformSpec('v2') });
-var CopyShaderCode = ShaderCode('copy', quad_vert, copy_frag);
-function getCopyRenderable(ctx, colorTexture) {
-    var values = __assign(__assign({}, QuadValues), { tColor: ValueCell.create(colorTexture), uTexSize: ValueCell.create(Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())) });
-    var schema = __assign({}, CopySchema);
-    var renderItem = createComputeRenderItem(ctx, 'triangles', CopyShaderCode, schema, values);
-    return createComputeRenderable(renderItem, values);
-}
 var DrawPass = /** @class */ (function () {
     function DrawPass(webgl, width, height, enableWboit) {
         this.webgl = webgl;
@@ -58,8 +50,8 @@ var DrawPass = /** @class */ (function () {
         this.marking = new MarkingPass(webgl, width, height);
         this.postprocessing = new PostprocessingPass(webgl, this);
         this.antialiasing = new AntialiasingPass(webgl, this);
-        this.copyFboTarget = getCopyRenderable(webgl, this.colorTarget.texture);
-        this.copyFboPostprocessing = getCopyRenderable(webgl, this.postprocessing.target.texture);
+        this.copyFboTarget = createCopyRenderable(webgl, this.colorTarget.texture);
+        this.copyFboPostprocessing = createCopyRenderable(webgl, this.postprocessing.target.texture);
     }
     Object.defineProperty(DrawPass.prototype, "wboitEnabled", {
         get: function () {

package/lib/mol-canvas3d/passes/draw.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-canvas3d/passes/wboit.js CHANGED Viewed

@@ -98,7 +98,7 @@ var WboitPass = /** @class */ (function () {
                     missing.push('depthTexture');
                 if (!drawBuffers)
                     missing.push('drawBuffers');
-                console.log("Missing \"" + missing.join('", "') + "\" extensions required for \"wboit\"");
+                console.log("Missing \"".concat(missing.join('", "'), "\" extensions required for \"wboit\""));
             }
             return false;
         }

package/lib/mol-canvas3d/passes/wboit.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-canvas3d/util.js CHANGED Viewed

@@ -9,7 +9,7 @@ export function setCanvasSize(canvas, width, height, scale) {
     if (scale === void 0) { scale = 1; }
     canvas.width = Math.round(window.devicePixelRatio * scale * width);
     canvas.height = Math.round(window.devicePixelRatio * scale * height);
-    Object.assign(canvas.style, { width: width + "px", height: height + "px" });
+    Object.assign(canvas.style, { width: "".concat(width, "px"), height: "".concat(height, "px") });
 }
 /** Resize canvas to container element taking `devicePixelRatio` into account */
 export function resizeCanvas(canvas, container, scale) {

package/lib/mol-canvas3d/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-data/db/table.js CHANGED Viewed

@@ -28,7 +28,7 @@ var Table;
             else if (!!guard[k])
                 ret[k] = guard[k];
             else
-                throw Error("Cannot find column '" + k + "'.");
+                throw Error("Cannot find column '".concat(k, "'."));
         }
         return ret;
     }

package/lib/mol-data/db/table.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-data/int/_spec/sorted-ranges.spec.js CHANGED Viewed

@@ -11,7 +11,7 @@ describe('rangesArray', function () {
         it(name, function () { return expect(a).toEqual(b); });
     }
     function testIterator(name, ranges, set, expectedValues) {
-        it("iterator, " + name, function () {
+        it("iterator, ".concat(name), function () {
             var rangesIt = SortedRanges.transientSegments(ranges, set);
             var index = expectedValues.index, start = expectedValues.start, end = expectedValues.end;
             var i = 0;

package/lib/mol-data/int/_spec/sorted-ranges.spec.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-data/int/impl/ordered-set.d.ts CHANGED Viewed

@@ -31,9 +31,9 @@ export declare function findPredecessorIndex(set: OrderedSetImpl, x: number): nu
 export declare function findPredecessorIndexInInterval(set: OrderedSetImpl, x: number, bounds: I): number;
 export declare function findRange(set: OrderedSetImpl, min: number, max: number): I<number>;
 export declare function intersectionSize(a: OrderedSetImpl, b: OrderedSetImpl): number;
-export declare function union(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
-export declare function intersect(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
-export declare function subtract(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
+export declare function union(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
+export declare function intersect(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
+export declare function subtract(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
 export declare function forEach(set: OrderedSetImpl, f: (value: number, i: number, ctx: any) => void, ctx: any): any;
 export declare function forEachSegment(set: OrderedSetImpl, segment: (v: number) => number, f: (value: number, segIndex: number, ctx: any) => void, ctx: any): any;
 export declare function indexedIntersect(idxA: OrderedSetImpl, a: S, b: S): OrderedSetImpl;

package/lib/mol-data/int/impl/sorted-array.d.ts CHANGED Viewed

@@ -9,7 +9,7 @@ export declare const Empty: Nums;
 export declare function ofSingleton(v: number): number[];
 export declare function ofSortedArray(xs: Nums): Nums;
 export declare function ofUnsortedArray(xs: Nums): Nums;
-export declare function ofRange(min: number, max: number): Int32Array | never[];
+export declare function ofRange(min: number, max: number): never[] | Int32Array;
 export declare function is(xs: any): xs is Nums;
 export declare function isRange(xs: Nums): boolean;
 export declare function start(xs: Nums): number;

package/lib/mol-data/int/impl/sorted-array.js CHANGED Viewed

@@ -36,8 +36,8 @@ export function hashCode(xs) {
 export function toString(xs) {
     var s = xs.length;
     if (s > 5)
-        return "[" + xs[0] + ", " + xs[1] + ", ..., " + xs[s - 1] + "], length " + s;
-    return "[" + xs.join(', ') + "]";
+        return "[".concat(xs[0], ", ").concat(xs[1], ", ..., ").concat(xs[s - 1], "], length ").concat(s);
+    return "[".concat(xs.join(', '), "]");
 }
 /** Returns the index of `x` in `set` or -1 if not found. */
 export function indexOf(xs, v) {

package/lib/mol-data/int/impl/sorted-array.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-data/int/tuple.js CHANGED Viewed

@@ -75,7 +75,7 @@ var IntTuple;
     IntTuple.hashCode = hashCode;
     function toString(t) {
         _float64[0] = t;
-        return "(" + _int32[0] + ", " + _int32[1] + ")";
+        return "(".concat(_int32[0], ", ").concat(_int32[1], ")");
     }
     IntTuple.toString = toString;
 })(IntTuple || (IntTuple = {}));

package/lib/mol-data/int/tuple.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-data/util/_spec/interval-iterator.spec.js CHANGED Viewed

@@ -7,7 +7,7 @@ import { Interval, SortedArray } from '../../int';
 import { IntervalIterator } from '../interval-iterator';
 describe('interval', function () {
     function testIterator(name, interval, set, expectedValues) {
-        it("iterator, " + name, function () {
+        it("iterator, ".concat(name), function () {
             var intervalIt = new IntervalIterator(interval, set);
             var index = expectedValues.index, start = expectedValues.start, end = expectedValues.end;
             var i = 0;

package/lib/mol-data/util/_spec/interval-iterator.spec.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"interval-iterator.spec.js","sourceRoot":"","sources":["../../../../src/mol-data/util/_spec/interval-iterator.spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,QAAQ,EAAc,WAAW,EAAE,MAAM,WAAW,CAAC;AAC9D,OAAO,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AAExD,QAAQ,CAAC,UAAU,EAAE;IACjB,SAAS,YAAY,CAAC,IAAY,EAAE,QAAkB,EAAE,GAAe,EAAE,cAAkE;QACvI,EAAE,CAAC,oBAAa,IAAI,CAAE,EAAE;YACpB,IAAM,UAAU,GAAG,IAAI,gBAAgB,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;YAC/C,IAAA,KAAK,GAAiB,cAAc,MAA/B,EAAE,KAAK,GAAU,cAAc,MAAxB,EAAE,GAAG,GAAK,cAAc,IAAnB,CAAoB;YAE7C,IAAI,CAAC,GAAG,CAAC,CAAC;YACV,OAAO,UAAU,CAAC,OAAO,EAAE;gBACvB,IAAM,OAAO,GAAG,UAAU,CAAC,IAAI,EAAE,CAAC;gBAClC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBACjC,EAAE,CAAC,CAAC;aACP;YACD,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACjC,CAAC,CAAC,CAAC;IACP,CAAC;IAED,YAAY,CAAC,OAAO,EAChB,QAAQ,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC,EACtB,WAAW,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,EACvC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAChD,CAAC;AACN,CAAC,CAAC,CAAC"}

package/lib/mol-geo/geometry/base.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -22,12 +22,24 @@ export declare const VisualQualityInfo: {
     lowest: {};
 };
 export declare type VisualQuality = keyof typeof VisualQualityInfo;
-export declare const VisualQualityNames: ("custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest")[];
-export declare const VisualQualityOptions: ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string][];
+export declare const VisualQualityNames: ("auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest")[];
+export declare const VisualQualityOptions: ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string][];
+export declare const ColorSmoothingParams: {
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+        resolutionFactor: number;
+        sampleStride: number;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+};
+export declare type ColorSmoothingParams = typeof ColorSmoothingParams;
+export declare function hasColorSmoothingProp(props: PD.Values<any>): props is PD.Values<ColorSmoothingParams>;
+export declare function getColorSmoothingProps(smoothColors: PD.Values<ColorSmoothingParams>['smoothColors'], preferSmoothing?: boolean, resolution?: number): {
+    resolution: number;
+    stride: number;
+} | undefined;
 export declare namespace BaseGeometry {
     const Params: {
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const ShadingCategory: PD.Info;

package/lib/mol-geo/geometry/base.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -11,6 +11,7 @@ import { ColorNames } from '../../mol-util/color/names';
 import { NullLocation } from '../../mol-model/location';
 import { UniformColorTheme } from '../../mol-theme/color/uniform';
 import { UniformSizeTheme } from '../../mol-theme/size/uniform';
+import { smoothstep } from '../../mol-math/interpolate';
 export var VisualQualityInfo = {
     'custom': {},
     'auto': {},
@@ -25,6 +26,38 @@ export var VisualQualityInfo = {
 export var VisualQualityNames = Object.keys(VisualQualityInfo);
 export var VisualQualityOptions = PD.arrayToOptions(VisualQualityNames);
 //
+export var ColorSmoothingParams = {
+    smoothColors: PD.MappedStatic('auto', {
+        auto: PD.Group({}),
+        on: PD.Group({
+            resolutionFactor: PD.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
+            sampleStride: PD.Numeric(3, { min: 1, max: 12, step: 1 }),
+        }),
+        off: PD.Group({})
+    }),
+};
+export function hasColorSmoothingProp(props) {
+    return !!props.smoothColors;
+}
+export function getColorSmoothingProps(smoothColors, preferSmoothing, resolution) {
+    if ((smoothColors.name === 'on' || (smoothColors.name === 'auto' && preferSmoothing)) && resolution && resolution < 3) {
+        var stride = 3;
+        if (smoothColors.name === 'on') {
+            resolution *= smoothColors.params.resolutionFactor;
+            stride = smoothColors.params.sampleStride;
+        }
+        else {
+            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
+            resolution *= 2 - smoothstep(0, 1.1, resolution);
+            resolution = Math.max(0.5, resolution);
+            if (resolution > 1.2)
+                stride = 2;
+        }
+        return { resolution: resolution, stride: stride };
+    }
+    ;
+}
+//
 export var BaseGeometry;
 (function (BaseGeometry) {
     BaseGeometry.Params = {

package/lib/mol-geo/geometry/base.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-geo/geometry/cylinders/cylinders.d.ts CHANGED Viewed

@@ -44,7 +44,7 @@ export declare namespace Cylinders {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Cylinders, Params>;