npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/cli/structure-info/model.js CHANGED Viewed

@@ -23,7 +23,7 @@ function downloadFromPdb(pdb) {
         var parsed;
         return __generator(this, function (_a) {
             switch (_a.label) {
-                case 0: return [4 /*yield*/, downloadCif("http://www.ebi.ac.uk/pdbe/static/entry/" + pdb + "_updated.cif", false)];
+                case 0: return [4 /*yield*/, downloadCif("http://www.ebi.ac.uk/pdbe/static/entry/".concat(pdb, "_updated.cif"), false)];
                 case 1:
                     parsed = _a.sent();
                     return [2 /*return*/, parsed.blocks[0]];
@@ -51,7 +51,7 @@ export function atomLabel(model, aI) {
     var label_asym_id = chains.label_asym_id;
     var rI = residueAtomSegments.index[aI];
     var cI = chainAtomSegments.index[aI];
-    return label_asym_id.value(cI) + " " + label_comp_id.value(aI) + " " + label_seq_id.value(rI) + " " + label_atom_id.value(aI);
+    return "".concat(label_asym_id.value(cI), " ").concat(label_comp_id.value(aI), " ").concat(label_seq_id.value(rI), " ").concat(label_atom_id.value(aI));
 }
 export function residueLabel(model, rI) {
     var _a = model.atomicHierarchy, atoms = _a.atoms, residues = _a.residues, chains = _a.chains, residueAtomSegments = _a.residueAtomSegments, chainAtomSegments = _a.chainAtomSegments;
@@ -60,7 +60,7 @@ export function residueLabel(model, rI) {
     var label_asym_id = chains.label_asym_id;
     var aI = residueAtomSegments.offsets[rI];
     var cI = chainAtomSegments.index[aI];
-    return label_asym_id.value(cI) + " " + label_comp_id.value(aI) + " " + label_seq_id.value(rI);
+    return "".concat(label_asym_id.value(cI), " ").concat(label_comp_id.value(aI), " ").concat(label_seq_id.value(rI));
 }
 export function printSecStructure(model) {
     console.log('\nSecondary Structure\n=============');
@@ -78,7 +78,7 @@ export function printSecStructure(model) {
         rI--;
         var e = elements[key[start]];
         if (e.kind !== 'none')
-            console.log(e.kind + ": " + residueLabel(model, start) + " - " + residueLabel(model, rI));
+            console.log("".concat(e.kind, ": ").concat(residueLabel(model, start), " - ").concat(residueLabel(model, rI)));
         rI++;
     }
 }
@@ -98,7 +98,7 @@ export function printBonds(structure, showIntra, showInter) {
                 var x = a[bI], y = b[bI];
                 if (x >= y)
                     continue;
-                console.log(atomLabel(model, elements[x]) + " -- " + atomLabel(model, elements[y]));
+                console.log("".concat(atomLabel(model, elements[x]), " -- ").concat(atomLabel(model, elements[y])));
             }
         }
     }
@@ -116,12 +116,12 @@ export function printBonds(structure, showIntra, showInter) {
                 var unitA = pairBonds.unitA, unitB = pairBonds.unitB, edgeCount = pairBonds.edgeCount;
                 var uA = structure.unitMap.get(unitA);
                 var uB = structure.unitMap.get(unitB);
-                console.log(unitA + " - " + unitB + ": " + edgeCount + " bond(s)");
+                console.log("".concat(unitA, " - ").concat(unitB, ": ").concat(edgeCount, " bond(s)"));
                 for (var _h = 0, _k = pairBonds.connectedIndices; _h < _k.length; _h++) {
                     var aI = _k[_h];
                     for (var _l = 0, _m = pairBonds.getEdges(aI); _l < _m.length; _l++) {
                         var bond = _m[_l];
-                        console.log(atomLabel(uA.model, uA.elements[aI]) + " -- " + atomLabel(uB.model, uB.elements[bond.indexB]));
+                        console.log("".concat(atomLabel(uA.model, uA.elements[aI]), " -- ").concat(atomLabel(uB.model, uB.elements[bond.indexB])));
                     }
                 }
             }
@@ -135,8 +135,8 @@ export function printSequence(model) {
         var key = _b[_a];
         var _c = byEntityKey[+key], sequence = _c.sequence, entityId = _c.entityId;
         var seqId = sequence.seqId, compId = sequence.compId;
-        console.log(entityId + " (" + sequence.kind + " " + seqId.value(0) + ", " + seqId.value(seqId.rowCount - 1) + ") (" + compId.value(0) + ", " + compId.value(compId.rowCount - 1) + ")");
-        console.log("" + Sequence.getSequenceString(sequence));
+        console.log("".concat(entityId, " (").concat(sequence.kind, " ").concat(seqId.value(0), ", ").concat(seqId.value(seqId.rowCount - 1), ") (").concat(compId.value(0), ", ").concat(compId.value(compId.rowCount - 1), ")"));
+        console.log("".concat(Sequence.getSequenceString(sequence)));
     }
     console.log();
 }
@@ -153,7 +153,7 @@ export function printRings(structure) {
         }
         if (all.length > 5)
             fps.push('...');
-        console.log("Unit " + unit.id + ", " + all.length + " ring(s), " + byFingerprint.size + " different fingerprint(s).\n  " + fps.join(', '));
+        console.log("Unit ".concat(unit.id, ", ").concat(all.length, " ring(s), ").concat(byFingerprint.size, " different fingerprint(s).\n  ").concat(fps.join(', ')));
     }
     console.log();
 }
@@ -166,10 +166,10 @@ export function printUnits(structure) {
         var elements = unit.elements;
         var size = OrderedSet.size(elements);
         if (Unit.isAtomic(l.unit)) {
-            console.log("Atomic unit " + unit.id + " " + unit.conformation.operator.name + ": " + size + " elements");
+            console.log("Atomic unit ".concat(unit.id, " ").concat(unit.conformation.operator.name, ": ").concat(size, " elements"));
         }
         else if (Unit.isCoarse(l.unit)) {
-            console.log("Coarse unit " + unit.id + " " + unit.conformation.operator.name + " (" + (Unit.isSpheres(l.unit) ? 'spheres' : 'gaussians') + "): " + size + " elements.");
+            console.log("Coarse unit ".concat(unit.id, " ").concat(unit.conformation.operator.name, " (").concat(Unit.isSpheres(l.unit) ? 'spheres' : 'gaussians', "): ").concat(size, " elements."));
             var props = StructureProperties.coarse;
             var modelSeq = l.unit.model.sequence;
             for (var j = 0, _j = Math.min(size, 3); j < _j; j++) {
@@ -179,7 +179,7 @@ export function printUnits(structure) {
                 var compId = modelSeq.byEntityKey[props.entityKey(l)].sequence.compId.value;
                 for (var e = start; e <= end; e++)
                     residues.push(compId(e));
-                console.log(props.asym_id(l) + ":" + start + "-" + end + " (" + residues.join('-') + ") " + props.asym_id(l) + " [" + props.x(l).toFixed(2) + ", " + props.y(l).toFixed(2) + ", " + props.z(l).toFixed(2) + "]");
+                console.log("".concat(props.asym_id(l), ":").concat(start, "-").concat(end, " (").concat(residues.join('-'), ") ").concat(props.asym_id(l), " [").concat(props.x(l).toFixed(2), ", ").concat(props.y(l).toFixed(2), ", ").concat(props.z(l).toFixed(2), "]"));
             }
             if (size > 3)
                 console.log("...");
@@ -192,10 +192,10 @@ export function printSymmetryInfo(model) {
     if (!symmetry)
         return;
     var _a = symmetry.spacegroup.cell, size = _a.size, anglesInRadians = _a.anglesInRadians;
-    console.log("Spacegroup: " + symmetry.spacegroup.name + " size: " + Vec3.toString(size) + " angles: " + Vec3.toString(anglesInRadians));
-    console.log("Assembly names: " + symmetry.assemblies.map(function (a) { return a.id; }).join(', '));
+    console.log("Spacegroup: ".concat(symmetry.spacegroup.name, " size: ").concat(Vec3.toString(size), " angles: ").concat(Vec3.toString(anglesInRadians)));
+    console.log("Assembly names: ".concat(symmetry.assemblies.map(function (a) { return a.id; }).join(', ')));
     // NCS example: 1auy
-    console.log("NCS operators: " + (symmetry.ncsOperators && symmetry.ncsOperators.map(function (a) { return a.name; }).join(', ')));
+    console.log("NCS operators: ".concat(symmetry.ncsOperators && symmetry.ncsOperators.map(function (a) { return a.name; }).join(', ')));
 }
 export function printModelStats(models) {
     return __awaiter(this, void 0, void 0, function () {
@@ -212,10 +212,10 @@ export function printModelStats(models) {
                 case 2:
                     m = _a.sent();
                     if (m.coarseHierarchy.isDefined) {
-                        console.log(m.label + " " + m.modelNum + ": " + m.atomicHierarchy.atoms._rowCount + " atom(s), " + m.coarseHierarchy.spheres.count + " sphere(s), " + m.coarseHierarchy.gaussians.count + " gaussian(s)");
+                        console.log("".concat(m.label, " ").concat(m.modelNum, ": ").concat(m.atomicHierarchy.atoms._rowCount, " atom(s), ").concat(m.coarseHierarchy.spheres.count, " sphere(s), ").concat(m.coarseHierarchy.gaussians.count, " gaussian(s)"));
                     }
                     else {
-                        console.log(m.label + " " + m.modelNum + ": " + m.atomicHierarchy.atoms._rowCount + " atom(s)");
+                        console.log("".concat(m.label, " ").concat(m.modelNum, ": ").concat(m.atomicHierarchy.atoms._rowCount, " atom(s)"));
                     }
                     _a.label = 3;
                 case 3:

package/lib/cli/structure-info/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/cli/structure-info/volume.js CHANGED Viewed

@@ -109,5 +109,5 @@ parser.add_argument('--mesh', {
     required: true
 });
 var args = parser.parse_args();
-run("https://ds.litemol.org/em/emd-" + args.emdb + "/cell?detail=4", args.mesh);
+run("https://ds.litemol.org/em/emd-".concat(args.emdb, "/cell?detail=4"), args.mesh);
 //# sourceMappingURL=volume.js.map

package/lib/cli/structure-info/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"volume.js","sourceRoot":"","sources":["../../../src/cli/structure-info/volume.ts"],"names":[],"mappings":";AACA;;;;GAIG;;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,KAAK,QAAQ,MAAM,UAAU,CAAC;AACrC,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAE7B,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAChD,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAC;AACxC,OAAO,EAAE,GAAG,EAAE,MAAM,yBAAyB,CAAC;AAC9C,OAAO,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,0BAA0B,EAAE,MAAM,kCAAkC,CAAC;AAC9E,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAC;AAC9C,OAAO,EAAE,2BAA2B,EAAE,WAAW,EAAE,MAAM,+CAA+C,CAAC;AAEzG,OAAO,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;AACjC,IAAM,cAAc,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;AAEpD,SAAe,SAAS,CAAC,GAAW;;;;;wBACpB,qBAAM,WAAW,CAAC,GAAG,EAAE,IAAI,CAAC,EAAA;;oBAAlC,GAAG,GAAG,SAA4B;oBAClC,IAAI,GAAG,GAAG,CAAC,MAAM,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC9C,qBAAM,2BAA2B,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAA;wBAApD,sBAAO,SAA6C,EAAC;;;;CACxD;AAED,SAAS,KAAK,CAAC,MAAc;IACzB,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,MAAM,CAAC,UAAU,CAAC;QAAE,OAAO;IACvC,IAAA,mBAAmB,GAAK,MAAM,CAAC,UAAU,CAAC,IAAI,oBAA3B,CAA4B;IACvD,IAAM,GAAG,GAAG,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE,CAAC,CAAC,CAAC;IACjD,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IACjB,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IACnC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC;AAED,SAAe,MAAM,CAAC,MAAc,EAAE,QAAgB;;;;;wBACrC,qBAAM,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,UAAA,OAAO,IAAI,OAAA,0BAA0B,CAAC,EAAE,OAAO,SAAA,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,WAAW,EAAE,EAAE,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,EAAjH,CAAiH,CAAC,CAAC,GAAG,EAAE,EAAA;;oBAAhK,IAAI,GAAG,SAAyJ;oBACtK,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,WAAW,EAAE,EAAE,EAAE,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC;oBAGtD,WAAW,GAAoB,IAAI,YAAxB,EAAE,aAAa,GAAK,IAAI,cAAT,CAAU;oBAEtC,EAAE,GAAG,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC;oBACjC,EAAE,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC;oBAEhC,GAAG,GAAG,aAAa,CAAC,MAAM,EAAE,CAAC;oBACnC,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE;wBAClC,aAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,aAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,aAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,aAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,aAAa,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;wBAC/B,aAAa,CAAC,UAAU,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;wBAClD,aAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBACD,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE;wBACpC,aAAa,CAAC,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;wBAC/B,aAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,aAAa,CAAC,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBAC3D,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;wBACnD,aAAa,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;qBAC9B;oBAED,qBAAM,cAAc,CAAC,QAAQ,EAAE,aAAa,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,EAAA;;oBAA5D,SAA4D,CAAC;;;;;CAChE;AAED,SAAe,GAAG,CAAC,GAAW,EAAE,YAAoB;;;;;wBACjC,qBAAM,SAAS,CAAC,GAAG,CAAC,EAAA;;oBAA7B,MAAM,GAAG,SAAoB;oBACnC,KAAK,CAAC,MAAM,CAAC,CAAC;oBACd,qBAAM,MAAM,CAAC,MAAM,EAAE,YAAY,CAAC,EAAA;;oBAAlC,SAAkC,CAAC;;;;;CACtC;AAED,IAAM,MAAM,GAAG,IAAI,QAAQ,CAAC,cAAc,CAAC;IACvC,QAAQ,EAAE,IAAI;IACd,WAAW,EAAE,6CAA6C;CAC7D,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE,IAAI,EAAE;IAChC,IAAI,EAAE,2BAA2B;CACpC,CAAC,CAAC;AACH,MAAM,CAAC,YAAY,CAAC,QAAQ,EAAE;IAC1B,IAAI,EAAE,eAAe;IACrB,QAAQ,EAAE,IAAI;CACjB,CAAC,CAAC;AAKH,IAAM,IAAI,GAAS,MAAM,CAAC,UAAU,EAAE,CAAC;AAEvC,GAAG,CAAC,wCAAiC,IAAI,CAAC,IAAI,mBAAgB,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC"}

package/lib/commonjs/apps/docking-viewer/index.js CHANGED Viewed

@@ -110,7 +110,7 @@ var Viewer = /** @class */ (function () {
             ? document.getElementById(elementOrId)
             : elementOrId;
         if (!element)
-            throw new Error("Could not get element with id '" + elementOrId + "'");
+            throw new Error("Could not get element with id '".concat(elementOrId, "'"));
         this.plugin = (0, mol_plugin_ui_1.createPlugin)(element, spec);
         this.plugin.customState = {
             colorPalette: {

package/lib/commonjs/apps/docking-viewer/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/apps/docking-viewer/index.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,uDAAsD;AAEtD,0DAAgG;AAChG,qDAAmD;AAGnD,iDAA6E;AAC7E,sDAA4D;AAC5D,sDAA2D;AAC3D,kDAAuD;AACvD,8CAAmD;AACnD,6CAA8C;AAC9C,2CAAsC;AACtC,8CAA6C;AAC7C,oDAAwD;AACxD,oEAAwE;AACxE,mCAAiC;AACjC,4DAAyD;AACzD,wBAAsB;AACtB,uCAA6E;AAE7E,OAAO,CAAC,+BAA+B,CAAC,CAAC;AAEzC,oDAAqE;AAA5D,kGAAA,cAAc,OAAW;AAClC,8CAAuE;AAA9D,qGAAA,YAAY,OAAA;AAAE,0GAAA,iBAAiB,OAAA;AAGxC,IAAM,oBAAoB,GAAG;IACzB,UAAU,EAAE,IAAA,yBAAU,EAAC,EAAE,CAAC;IAC1B,gBAAgB,EAAE,IAAI;IACtB,kBAAkB,EAAE,IAAI;IACxB,qBAAqB,EAAE,IAAI;IAC3B,qBAAqB,EAAE,UAAyC;IAChE,kBAAkB,EAAE,IAAI;IACxB,aAAa,EAAE,IAAI;IACnB,mBAAmB,EAAE,IAAI;IAEzB,kBAAkB,EAAE,qBAAY,CAAC,QAAQ,CAAC,UAAU,CAAC,YAAY;IACjE,oBAAoB,EAAE,qBAAY,CAAC,QAAQ,CAAC,YAAY,CAAC,YAAY;IACrE,oBAAoB,EAAE,qBAAY,CAAC,QAAQ,CAAC,YAAY,CAAC,YAAY;IACrE,yBAAyB,EAAE,qBAAY,CAAC,QAAQ,CAAC,iBAAiB,CAAC,YAAY;IAC/E,qBAAqB,EAAE,qBAAY,CAAC,QAAQ,CAAC,aAAa,CAAC,YAAY;IACvE,iBAAiB,EAAE,qBAAY,CAAC,KAAK,CAAC,aAAa,CAAC,YAAY;IAChE,qBAAqB,EAAE,qBAAY,CAAC,eAAe,CAAC,aAAa,CAAC,YAAY;IAC9E,WAAW,EAAE,qBAAY,CAAC,QAAQ,CAAC,kBAAkB,CAAC,YAAY;IAClE,YAAY,EAAE,qBAAY,CAAC,QAAQ,CAAC,mBAAmB,CAAC,YAAY;CACvE,CAAC;AAEF;IAGI,gBAAY,WAAiC,EAAE,MAA2C,EAAE,WAAkB;QAA9G,iBA4FC;QA5F8C,uBAAA,EAAA,UAAU,IAAA,aAAK,EAAC,QAAQ,CAAC,EAAE,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;QAAE,4BAAA,EAAA,kBAAkB;;QAC1G,IAAM,CAAC,mDAAQ,oBAAoB,GAAK;YACpC,gBAAgB,EAAE,KAAK;YACvB,kBAAkB,EAAE,KAAK;YACzB,qBAAqB,EAAE,KAAK;YAC5B,kBAAkB,EAAE,IAAI;YACxB,aAAa,EAAE,KAAK;YACpB,mBAAmB,EAAE,IAAI;YAEzB,kBAAkB,EAAE,IAAI;YACxB,oBAAoB,EAAE,KAAK;YAC3B,oBAAoB,EAAE,KAAK;YAC3B,yBAAyB,EAAE,KAAK;YAChC,qBAAqB,EAAE,KAAK;SAC/B,CAAE,CAAC;QACJ,IAAM,WAAW,GAAG,IAAA,0BAAmB,GAAE,CAAC;QAE1C,IAAM,IAAI,GAAiB;YACvB,OAAO,EAAE,WAAW,CAAC,OAAO;YAC5B,SAAS,EAAE;gBACP,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,cAAc,CAAC,aAAa,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC;gBAClF,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,cAAc,CAAC,wBAAwB,CAAC;gBAC5E,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,MAAM,CAAC,SAAS,CAAC;gBAErD,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,WAAW,CAAC,aAAa,CAAC;gBAC9D,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,WAAW,CAAC,YAAY,CAAC;gBAC7D,iBAAU,CAAC,QAAQ,CAAC,0BAAe,CAAC,WAAW,CAAC,kBAAkB,CAAC;aACtE;YACD,UAAU,EAAE,WAAW,CAAC,UAAU;YAClC,kBAAkB,EAAE,WAAW,CAAC,kBAAkB;YAClD,MAAM,EAAE;gBACJ,OAAO,EAAE;oBACL,UAAU,EAAE,CAAC,CAAC,gBAAgB;oBAC9B,YAAY,EAAE,CAAC,CAAC,kBAAkB;oBAClC,eAAe,EAAE,CAAC,CAAC,qBAAqB;iBAC3C;aACJ;YACD,UAAU,kDACH,WAAW,CAAC,UAAU,KACzB,QAAQ,kDACD,MAAA,WAAW,CAAC,UAAU,0CAAE,QAAQ,KACnC,GAAG,EAAE,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,EAC9C,MAAM,EAAE,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,EAC5C,IAAI,EAAE,CAAC,CAAC,mBAAmB,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,KAEpD,WAAW,EAAE,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,EACzD,QAAQ,EAAE;oBACN,IAAI,EAAE,4BAAiB;iBAC1B,GACJ;YACD,MAAM,EAAE;gBACJ,CAAC,qBAAY,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC,kBAAkB,CAAC;gBACxD,CAAC,qBAAY,CAAC,QAAQ,CAAC,YAAY,EAAE,CAAC,CAAC,oBAAoB,CAAC;gBAC5D,CAAC,qBAAY,CAAC,QAAQ,CAAC,YAAY,EAAE,CAAC,CAAC,oBAAoB,CAAC;gBAC5D,CAAC,qBAAY,CAAC,QAAQ,CAAC,iBAAiB,EAAE,CAAC,CAAC,yBAAyB,CAAC;gBACtE,CAAC,qBAAY,CAAC,QAAQ,CAAC,aAAa,EAAE,CAAC,CAAC,qBAAqB,CAAC;gBAC9D,CAAC,qBAAY,CAAC,KAAK,CAAC,aAAa,EAAE,CAAC,CAAC,iBAAiB,CAAC;gBACvD,CAAC,qBAAY,CAAC,KAAK,CAAC,aAAa,EAAE,CAAC,CAAC,iBAAiB,CAAC;gBACvD,CAAC,qBAAY,CAAC,eAAe,CAAC,aAAa,EAAE,CAAC,CAAC,qBAAqB,CAAC;gBACrE,CAAC,qBAAY,CAAC,QAAQ,CAAC,kBAAkB,EAAE,CAAC,CAAC,WAAW,CAAC;gBACzD,CAAC,qBAAY,CAAC,QAAQ,CAAC,mBAAmB,EAAE,CAAC,CAAC,YAAY,CAAC;gBAC3D,CAAC,sBAAW,EAAE,WAAW,CAAC;aAC7B;SACJ,CAAC;QAEF,IAAM,OAAO,GAAG,OAAO,WAAW,KAAK,QAAQ;YAC3C,CAAC,CAAC,QAAQ,CAAC,cAAc,CAAC,WAAW,CAAC;YACtC,CAAC,CAAC,WAAW,CAAC;QAClB,IAAI,CAAC,OAAO;YAAE,MAAM,IAAI,KAAK,CAAC,yCAAkC,WAAW,MAAG,CAAC,CAAC;QAChF,IAAI,CAAC,MAAM,GAAG,IAAA,4BAAY,EAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAEzC,IAAI,CAAC,MAAM,CAAC,WAAmB,GAAG;YAC/B,YAAY,EAAE;gBACV,IAAI,EAAE,QAAQ;gBACd,MAAM,EAAE,EAAE,IAAI,EAAE,EAAE,MAAM,QAAA,EAAE,EAAE;aAC/B;SACJ,CAAC;QAEF,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,QAAQ,CAAC,WAAW,CAAC,SAAS,CAAC,UAAA,CAAC;YAClD,IAAI,CAAC,EAAE;gBACH,yBAAc,CAAC,QAAQ,CAAC,WAAW,CAAC,KAAI,CAAC,MAAM,EAAE,EAAE,QAAQ,EAAE;wBACzD,QAAQ,kDACD,KAAI,CAAC,MAAM,CAAC,QAAS,CAAC,KAAK,CAAC,QAAQ,KACvC,eAAe,EAAE,kBAAU,CAAC,KAAK,GACpC;wBACD,MAAM,kDACC,KAAI,CAAC,MAAM,CAAC,QAAS,CAAC,KAAK,CAAC,MAAM,KACrC,MAAM,EAAE,EAAE,IAAI,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE,EAAE,EAAE,GAChD;qBACJ,EAAE,CAAC,CAAC;aACR;QACL,CAAC,CAAC,CAAC;IACP,CAAC;IAEK,+CAA8B,GAApC,UAAqC,OAA+E;;;;;;;wBAC1G,UAAU,GAAsB,EAAE,CAAC;8BACM,EAAP,mBAAO;;;6BAAP,CAAA,qBAAO,CAAA;wBAApC,kBAAyB,EAAvB,GAAG,SAAA,EAAE,MAAM,YAAA,EAAE,QAAQ,cAAA;wBACjB,qBAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,GAAG,KAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,EAAA;;wBAAlE,SAAO,SAA2D;wBACrD,qBAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,eAAe,CAAC,MAAI,EAAE,MAAM,CAAC,EAAA;;wBAA/E,UAAU,GAAG,SAAkE;wBACvE,qBAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,WAAW,CAAC,UAAU,CAAC,EAAA;;wBAApE,KAAK,GAAG,SAA4D;wBAClD,qBAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,qBAAqB,CAAC,KAAK,CAAC,EAAA;;wBAAnF,eAA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package/lib/commonjs/apps/docking-viewer/viewport.d.ts CHANGED Viewed

@@ -9,7 +9,7 @@ import { StructureRef } from '../../mol-plugin-state/manager/structure/hierarchy
 import { PluginUIComponent } from '../../mol-plugin-ui/base';
 export declare const StructurePreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
         globalName: any;
         carbonColor: any;
@@ -31,7 +31,7 @@ export declare const StructurePreset: StructureRepresentationPresetProvider<{
 }>;
 export declare const IllustrativePreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
         globalName: any;
         carbonColor: any;

package/lib/commonjs/apps/viewer/index.d.ts CHANGED Viewed

@@ -24,7 +24,7 @@ export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
 export { setDebugMode, setProductionMode } from '../../mol-util/debug';
 declare const DefaultViewerOptions: {
     customFormats: [string, DataFormatProvider<any, any, any>][];
-    extensions: ("geo-export" | "g3d" | "cellpack" | "dnatco-confal-pyramids" | "pdbe-structure-quality-report" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "mp4-export")[];
+    extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation")[];
     layoutIsExpanded: boolean;
     layoutShowControls: boolean;
     layoutShowRemoteState: boolean;
@@ -130,7 +130,7 @@ export declare class Viewer {
             unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
             structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
             structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            representation: {
+            representation: {} | {
                 components?: undefined;
                 representations?: undefined;
             } | {
@@ -188,7 +188,7 @@ export declare class Viewer {
                 representations: {
                     all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
                 };
-            } | {} | {
+            } | {
                 components?: undefined;
                 representations?: undefined;
             } | {
@@ -213,7 +213,7 @@ export declare class Viewer {
             unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
             structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
             structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            representation: {
+            representation: {} | {
                 components?: undefined;
                 representations?: undefined;
             } | {
@@ -271,7 +271,7 @@ export declare class Viewer {
                 representations: {
                     all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
                 };
-            } | {} | {
+            } | {
                 components?: undefined;
                 representations?: undefined;
             } | {
@@ -290,7 +290,7 @@ export declare class Viewer {
             unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
             structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
             structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
-            representation: {
+            representation: {} | {
                 components?: undefined;
                 representations?: undefined;
             } | {
@@ -348,7 +348,7 @@ export declare class Viewer {
                 representations: {
                     all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
                 };
-            } | {} | {
+            } | {
                 components?: undefined;
                 representations?: undefined;
             } | {

package/lib/commonjs/apps/viewer/index.js CHANGED Viewed

@@ -129,11 +129,11 @@ var Viewer = /** @class */ (function () {
             ? document.getElementById(elementOrId)
             : elementOrId;
         if (!element)
-            throw new Error("Could not get element with id '" + elementOrId + "'");
+            throw new Error("Could not get element with id '".concat(elementOrId, "'"));
         this.plugin = (0, mol_plugin_ui_1.createPlugin)(element, spec);
     }
     Viewer.prototype.setRemoteSnapshot = function (id) {
-        var url = this.plugin.config.get(config_1.PluginConfig.State.CurrentServer) + "/get/" + id;
+        var url = "".concat(this.plugin.config.get(config_1.PluginConfig.State.CurrentServer), "/get/").concat(id);
         return commands_1.PluginCommands.State.Snapshots.Fetch(this.plugin, { url: url });
     };
     Viewer.prototype.loadSnapshotFromUrl = function (url, type) {
@@ -294,7 +294,7 @@ var Viewer = /** @class */ (function () {
             return (0, tslib_1.__generator)(this, function (_b) {
                 plugin = this.plugin;
                 if (!plugin.dataFormats.get(format)) {
-                    throw new Error("Unknown density format: " + format);
+                    throw new Error("Unknown density format: ".concat(format));
                 }
                 if (options === null || options === void 0 ? void 0 : options.isLazy) {
                     update = this.plugin.build();

package/lib/commonjs/apps/viewer/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/cli/chem-comp-dict/create-ions.js CHANGED Viewed

@@ -27,7 +27,7 @@ function extractIonNames(ccd) {
     return ionNames;
 }
 function writeIonNamesFile(filePath, ionNames) {
-    var output = "/**\n * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated ion names params file. Names extracted from CCD components.\n *\n * @author molstar/chem-comp-dict/create-table cli\n */\n\nexport const IonNames = new Set(" + JSON.stringify(ionNames).replace(/"/g, "'").replace(/,/g, ', ') + ");\n";
+    var output = "/**\n * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.\n *\n * Code-generated ion names params file. Names extracted from CCD components.\n *\n * @author molstar/chem-comp-dict/create-table cli\n */\n\nexport const IonNames = new Set(".concat(JSON.stringify(ionNames).replace(/"/g, "'").replace(/,/g, ', '), ");\n");
     writeFile(filePath, output);
 }
 function run(out, forceDownload) {

package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/cli/chem-comp-dict/create-table.js CHANGED Viewed

@@ -20,10 +20,10 @@ var mmcif_extras_1 = require("../../mol-io/reader/cif/schema/mmcif-extras");
 var ccd_extras_1 = require("../../mol-io/reader/cif/schema/ccd-extras");
 var util_1 = require("./util");
 function ccbKey(compId, atomId1, atomId2) {
-    return atomId1 < atomId2 ? compId + ":" + atomId1 + "-" + atomId2 : compId + ":" + atomId2 + "-" + atomId1;
+    return atomId1 < atomId2 ? "".concat(compId, ":").concat(atomId1, "-").concat(atomId2) : "".concat(compId, ":").concat(atomId2, "-").concat(atomId1);
 }
 function ccaKey(compId, atomId) {
-    return compId + ":" + atomId;
+    return "".concat(compId, ":").concat(atomId);
 }
 function addChemCompBondToSet(set, ccb) {
     for (var i = 0, il = ccb._rowCount; i < il; ++i) {
@@ -68,7 +68,7 @@ function checkAddingBondsFromPVCD(pvcd) {
                     extraBonds.forEach(function (bk) {
                         var _a = bk.split('|'), a1 = _a[0], a2 = _a[1];
                         if (entryAtoms.has(a1) && entryAtoms.has(a2)) {
-                            console.error("Adding all PVCD bonds would wrongly add bond " + bk + " for " + k);
+                            console.error("Adding all PVCD bonds would wrongly add bond ".concat(bk, " for ").concat(k));
                         }
                     });
                 };

package/lib/commonjs/cli/chem-comp-dict/create-table.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/cli/chem-comp-dict/util.d.ts CHANGED Viewed

@@ -16,7 +16,7 @@ export declare function readCCD(): Promise<import("../../mol-data/db").DatabaseC
         name: import("../../mol-data/db/column").Column.Schema.Str;
         one_letter_code: import("../../mol-data/db/column").Column.Schema.Str;
         three_letter_code: import("../../mol-data/db/column").Column.Schema.Str;
-        type: import("../../mol-data/db/column").Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other">;
+        type: import("../../mol-data/db/column").Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking">;
         pdbx_synonyms: import("../../mol-data/db/column").Column.Schema.List<string>;
         pdbx_type: import("../../mol-data/db/column").Column.Schema.Str;
         pdbx_ambiguous_flag: import("../../mol-data/db/column").Column.Schema.Str;
@@ -57,7 +57,7 @@ export declare function readCCD(): Promise<import("../../mol-data/db").DatabaseC
         comp_id: import("../../mol-data/db/column").Column.Schema.Str;
         value_order: import("../../mol-data/db/column").Column.Schema.Aliased<"sing" | "doub" | "trip" | "quad" | "arom" | "poly" | "delo" | "pi">;
         pdbx_ordinal: import("../../mol-data/db/column").Column.Schema.Int;
-        pdbx_stereo_config: import("../../mol-data/db/column").Column.Schema.Aliased<"E" | "Z" | "N">;
+        pdbx_stereo_config: import("../../mol-data/db/column").Column.Schema.Aliased<"N" | "E" | "Z">;
         pdbx_aromatic_flag: import("../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
     };
     pdbx_chem_comp_descriptor: {
@@ -84,7 +84,7 @@ export declare function readPVCD(): Promise<import("../../mol-data/db").Database
         name: import("../../mol-data/db/column").Column.Schema.Str;
         one_letter_code: import("../../mol-data/db/column").Column.Schema.Str;
         three_letter_code: import("../../mol-data/db/column").Column.Schema.Str;
-        type: import("../../mol-data/db/column").Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other">;
+        type: import("../../mol-data/db/column").Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking">;
         pdbx_synonyms: import("../../mol-data/db/column").Column.Schema.List<string>;
         pdbx_type: import("../../mol-data/db/column").Column.Schema.Str;
         pdbx_ambiguous_flag: import("../../mol-data/db/column").Column.Schema.Str;
@@ -125,7 +125,7 @@ export declare function readPVCD(): Promise<import("../../mol-data/db").Database
         comp_id: import("../../mol-data/db/column").Column.Schema.Str;
         value_order: import("../../mol-data/db/column").Column.Schema.Aliased<"sing" | "doub" | "trip" | "quad" | "arom" | "poly" | "delo" | "pi">;
         pdbx_ordinal: import("../../mol-data/db/column").Column.Schema.Int;
-        pdbx_stereo_config: import("../../mol-data/db/column").Column.Schema.Aliased<"E" | "Z" | "N">;
+        pdbx_stereo_config: import("../../mol-data/db/column").Column.Schema.Aliased<"N" | "E" | "Z">;
         pdbx_aromatic_flag: import("../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
     };
     pdbx_chem_comp_descriptor: {