molstar 2.3.7 → 2.4.1

package/lib/mol-repr/structure/visual/util/color.js

@@ -1,94 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { calcMeshColorSmoothing } from '../../../../mol-geo/geometry/mesh/color-smoothing';
-import { calcTextureMeshColorSmoothing } from '../../../../mol-geo/geometry/texture-mesh/color-smoothing';
-import { smoothstep } from '../../../../mol-math/interpolate';
-import { ValueCell } from '../../../../mol-util';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export var ColorSmoothingParams = {
-    smoothColors: PD.MappedStatic('auto', {
-        auto: PD.Group({}),
-        on: PD.Group({
-            resolutionFactor: PD.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
-            sampleStride: PD.Numeric(3, { min: 1, max: 12, step: 1 }),
-        }),
-        off: PD.Group({})
-    }),
-};
-export function getColorSmoothingProps(props, theme, resolution) {
-    if ((props.smoothColors.name === 'on' || (props.smoothColors.name === 'auto' && theme.color.preferSmoothing)) && resolution && resolution < 3) {
-        var stride = 3;
-        if (props.smoothColors.name === 'on') {
-            resolution *= props.smoothColors.params.resolutionFactor;
-            stride = props.smoothColors.params.sampleStride;
-        }
-        else {
-            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
-            resolution *= 2 - smoothstep(0, 1.1, resolution);
-            resolution = Math.max(0.5, resolution);
-            if (resolution > 1.2)
-                stride = 2;
-        }
-        return { resolution: resolution, stride: stride };
-    }
-    ;
-}
-function isSupportedColorType(x) {
-    return x === 'group' || x === 'groupInstance';
-}
-export function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    var smoothingData = calcMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionBuffer: values.aPosition.ref.value,
-        groupBuffer: values.aGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    if (smoothingData.kind === 'volume') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColorGrid, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-        ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-        ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-    }
-    else if (smoothingData.kind === 'vertex') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColor, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.texDim);
-    }
-}
-export function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
-    var smoothingData = calcTextureMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionTexture: values.tPosition.ref.value,
-        groupTexture: values.tGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-    ValueCell.update(values.tColorGrid, smoothingData.texture);
-    ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-    ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-    ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-}
-//# sourceMappingURL=color.js.map

package/lib/mol-repr/structure/visual/util/color.js.map

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package/lib/mol-repr/structure/visual/util/orientation.d.ts

@@ -1,17 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Unit, StructureElement } from '../../../../mol-model/structure';
-import { PickingId } from '../../../../mol-geo/geometry/picking';
-import { Interval } from '../../../../mol-data/int';
-import { Loci } from '../../../../mol-model/loci';
-import { LocationIterator } from '../../../../mol-geo/util/location-iterator';
-import { StructureGroup } from './common';
-export declare function isUnitApplicable(unit: Unit): boolean;
-export declare function UnitIterator(structureGroup: StructureGroup): LocationIterator;
-export declare function getUnitLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): StructureElement.Loci | {
-    kind: "empty-loci";
-};
-export declare function eachUnit(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean): boolean;

package/lib/mol-repr/structure/visual/util/orientation.js

@@ -1,71 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Unit, Structure, StructureElement } from '../../../../mol-model/structure';
-import { OrderedSet, Interval } from '../../../../mol-data/int';
-import { EmptyLoci } from '../../../../mol-model/loci';
-import { LocationIterator } from '../../../../mol-geo/util/location-iterator';
-export function isUnitApplicable(unit) {
-    if (Unit.Traits.is(unit.traits, 1 /* MultiChain */))
-        return false;
-    if (Unit.Traits.is(unit.traits, 2 /* Partitioned */))
-        return false;
-    if (Unit.isCoarse(unit))
-        return true;
-    if (unit.elements.length === 0)
-        return false;
-    unit.model.atomicHierarchy.derived.residue.moleculeType;
-    var rI = unit.residueIndex[unit.elements[0]];
-    var mt = unit.model.atomicHierarchy.derived.residue.moleculeType[rI];
-    if (mt === 3 /* Ion */)
-        return false;
-    if (mt === 2 /* Water */)
-        return false;
-    return true;
-}
-export function UnitIterator(structureGroup) {
-    var group = structureGroup.group, structure = structureGroup.structure;
-    var groupCount = 1;
-    var instanceCount = group.units.length;
-    var location = StructureElement.Location.create(structure);
-    var getLocation = function (groupIndex, instanceIndex) {
-        var unit = group.units[instanceIndex];
-        location.unit = unit;
-        location.element = unit.elements[groupIndex];
-        return location;
-    };
-    return LocationIterator(groupCount, instanceCount, 1, getLocation);
-}
-export function getUnitLoci(pickingId, structureGroup, id) {
-    var objectId = pickingId.objectId, instanceId = pickingId.instanceId;
-    if (id === objectId) {
-        var structure = structureGroup.structure, group = structureGroup.group;
-        var unit = group.units[instanceId];
-        var indices = OrderedSet.ofBounds(0, unit.elements.length);
-        return StructureElement.Loci(structure, [{ unit: unit, indices: indices }]);
-    }
-    return EmptyLoci;
-}
-export function eachUnit(loci, structureGroup, apply) {
-    var changed = false;
-    if (!StructureElement.Loci.is(loci))
-        return false;
-    var structure = structureGroup.structure, group = structureGroup.group;
-    if (!Structure.areEquivalent(loci.structure, structure))
-        return false;
-    var elementCount = group.elements.length;
-    for (var _i = 0, _a = loci.elements; _i < _a.length; _i++) {
-        var e = _a[_i];
-        var unitIdx = group.unitIndexMap.get(e.unit.id);
-        if (unitIdx !== undefined) {
-            if (OrderedSet.size(e.indices) === elementCount) {
-                if (apply(Interval.ofSingleton(unitIdx)))
-                    changed = true;
-            }
-        }
-    }
-    return changed;
-}
-//# sourceMappingURL=orientation.js.map

package/lib/mol-repr/structure/visual/util/orientation.js.map

@@ -1 +0,0 @@
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