npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/commonjs/mol-plugin-state/builder/structure/representation.js CHANGED Viewed

@@ -89,7 +89,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
     };
     StructureRepresentationBuilder.prototype.registerPreset = function (provider) {
         if (this.providerMap.has(provider.id)) {
-            throw new Error("Representation provider with id '" + provider.id + "' already registered.");
+            throw new Error("Representation provider with id '".concat(provider.id, "' already registered."));
         }
         this._providers.push(provider);
         this.providerMap.set(provider.id, provider);
@@ -117,7 +117,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
             : {});
         var defaults = this.plugin.config.get(config_1.PluginConfig.Structure.DefaultRepresentationPresetParams);
         prms = param_definition_1.ParamDefinition.merge(pd, defaults, prms);
-        var task = mol_task_1.Task.create("" + provider.display.name, function () { return provider.apply(cell, prms, _this.plugin); });
+        var task = mol_task_1.Task.create("".concat(provider.display.name), function () { return provider.apply(cell, prms, _this.plugin); });
         return this.plugin.runTask(task);
     };
     StructureRepresentationBuilder.prototype.addRepresentation = function (structure, props, options) {

package/lib/commonjs/mol-plugin-state/builder/structure/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/commonjs/mol-plugin-state/builder/structure.js CHANGED Viewed

@@ -37,7 +37,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         provider = typeof format === 'string' ? this.plugin.dataFormats.get(format) : format;
                         if (!provider)
-                            throw new Error("'" + format + "' is not a supported data format.");
+                            throw new Error("'".concat(format, "' is not a supported data format."));
                         return [4 /*yield*/, provider.parse(this.plugin, data)];
                     case 1:
                         trajectory = (_a.sent()).trajectory;
@@ -123,7 +123,7 @@ var StructureBuilder = /** @class */ (function () {
                     case 0:
                         state = this.dataState;
                         root = state.build().to(structure);
-                        keyTag = "structure-component-" + key;
+                        keyTag = "structure-component-".concat(key);
                         component = root.applyOrUpdateTagged(keyTag, transforms_1.StateTransforms.Model.StructureComponent, params, {
                             tags: tags ? (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], tags, true), [keyTag], false) : [keyTag]
                         });
@@ -153,7 +153,7 @@ var StructureBuilder = /** @class */ (function () {
             type: { name: 'static', params: type },
             nullIfEmpty: true,
             label: ((params === null || params === void 0 ? void 0 : params.label) || '').trim()
-        }, "static-" + type, params === null || params === void 0 ? void 0 : params.tags);
+        }, "static-".concat(type), params === null || params === void 0 ? void 0 : params.tags);
     };
     StructureBuilder.prototype.tryCreateComponentFromSelection = function (structure, selection, key, params) {
         var _this = this;

package/lib/commonjs/mol-plugin-state/builder/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/commonjs/mol-plugin-state/formats/registry.js CHANGED Viewed

@@ -124,7 +124,7 @@ var DataFormatRegistry = /** @class */ (function () {
             return this._map.get(name);
         }
         else {
-            throw new Error("unknown data format name '" + name + "'");
+            throw new Error("unknown data format name '".concat(name, "'"));
         }
     };
     Object.defineProperty(DataFormatRegistry.prototype, "list", {

package/lib/commonjs/mol-plugin-state/formats/registry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/formats/registry.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAKH,2CAAwD;AACxD,mCAAgD;AAChD,iCAA8C;AAC9C,yCAAsD;AAEtD;IAsCI;QArCQ,UAAK,GAAqD,EAAE,CAAA;QAC5D,SAAI,GAAG,IAAI,GAAG,EAA8B,CAAA;QAC5C,gBAAW,GAA4B,SAAS,CAAA;QAChD,sBAAiB,GAA4B,SAAS,CAAA;QACtD,aAAQ,GAA2C,SAAS,CAAA;QAkChE,KAAsB,UAAoB,EAApB,yBAAA,6BAAoB,EAApB,kCAAoB,EAApB,IAAoB;YAA/B,IAAA,+BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA2B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC5D,KAAsB,UAAuB,EAAvB,4BAAA,mCAAuB,EAAvB,qCAAuB,EAAvB,IAAuB;YAAlC,IAAA,kCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA8B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC/D,KAAsB,UAAmB,EAAnB,wBAAA,2BAAmB,EAAnB,iCAAmB,EAAnB,IAAmB;YAA9B,IAAA,8BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA0B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC3D,KAAsB,UAAwB,EAAxB,6BAAA,qCAAwB,EAAxB,sCAAwB,EAAxB,IAAwB;YAAnC,IAAA,mCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA+B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;IACpE,CAAC;IApCD,sBAAI,qCAAK;aAAT;YACI,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAqB,EAA9C,CAA8C,CAAC,CAAC;QAC/E,CAAC;;;OAAA;IAED,sBAAI,0CAAU;aAAd;YACI,IAAI,IAAI,CAAC,WAAW;gBAAE,OAAO,IAAI,CAAC,WAAW,CAAC;YAC9C,IAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;YACrC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAC1B,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;gBAC/D,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;YACnE,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,WAAW,GAAG,UAAU,CAAC;YAC9B,OAAO,UAAU,CAAC;QACtB,CAAC;;;OAAA;IAED,sBAAI,gDAAgB;aAApB;YACI,IAAI,IAAI,CAAC,iBAAiB;gBAAE,OAAO,IAAI,CAAC,iBAAiB,CAAC;YAC1D,IAAM,gBAAgB,GAAG,IAAI,GAAG,EAAU,CAAC;YAC3C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAAO,OAAA,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,gBAAgB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAzB,CAAyB,CAAC,CAAA;aAAA,CAAC,CAAC;YAC3G,IAAI,CAAC,iBAAiB,GAAG,gBAAgB,CAAC;YAC1C,OAAO,gBAAgB,CAAC;QAC5B,CAAC;;;OAAA;IAED,sBAAI,uCAAO;aAAX;YACI,IAAI,IAAI,CAAC,QAAQ;gBAAE,OAAO,IAAI,CAAC,QAAQ,CAAC;YACxC,IAAM,OAAO,GAA+B,EAAE,CAAC;YAC/C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAkB;oBAAhB,IAAI,UAAA,EAAE,QAAQ,cAAA;gBAAO,OAAA,OAAO,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC;YAA7D,CAA6D,CAAC,CAAC;YAC1G,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC;YACxB,OAAO,OAAO,CAAC;QACnB,CAAC;;;OAAA;IAOA,CAAC;IAEM,mCAAM,GAAd;QACI,IAAI,CAAC,WAAW,GAAG,SAAS,CAAC;QAC7B,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAC;QACnC,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAC;IAC9B,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY,EAAE,QAA4B;QAC1C,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAClC,CAAC;IAED,mCAAM,GAAN,UAAO,IAAY;QACf,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,IAAI,EAAf,CAAe,CAAC,EAAE,CAAC,CAAC,CAAC;QACjE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;IAED,iCAAI,GAAJ,UAAK,IAAc,EAAE,eAA8E;QAC/F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxC,IAAA,QAAQ,GAAK,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,SAAlB,CAAmB;YAEnC,IAAI,MAAM,GAAG,KAAK,CAAC;YACnB,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;iBAC5F,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;YACtG,IAAI,MAAM,IAAI,CAAC,CAAC,QAAQ,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC,IAAI,CAAC,CAAC;gBAAE,OAAO,QAAQ,CAAC;SAChH;QACD,OAAO;IACX,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY;QACZ,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YACrB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAE,CAAC;SAC/B;aAAM;YACH,MAAM,IAAI,KAAK,CAAC~~,+BAA6B~~,IAAI,MAAG,CAAC,CAAC;SACzD;IACL,CAAC;IAED,sBAAI,oCAAI;aAAR;YACI,OAAO,IAAI,CAAC,KAAK,CAAC;QACtB,CAAC;;;OAAA;IACL,yBAAC;AAAD,CAAC,AAtFD,IAsFC;AAtFY,gDAAkB"}
1	+ {"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/formats/registry.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAKH,2CAAwD;AACxD,mCAAgD;AAChD,iCAA8C;AAC9C,yCAAsD;AAEtD;IAsCI;QArCQ,UAAK,GAAqD,EAAE,CAAA;QAC5D,SAAI,GAAG,IAAI,GAAG,EAA8B,CAAA;QAC5C,gBAAW,GAA4B,SAAS,CAAA;QAChD,sBAAiB,GAA4B,SAAS,CAAA;QACtD,aAAQ,GAA2C,SAAS,CAAA;QAkChE,KAAsB,UAAoB,EAApB,yBAAA,6BAAoB,EAApB,kCAAoB,EAApB,IAAoB;YAA/B,IAAA,+BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA2B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC5D,KAAsB,UAAuB,EAAvB,4BAAA,mCAAuB,EAAvB,qCAAuB,EAAvB,IAAuB;YAAlC,IAAA,kCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA8B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC/D,KAAsB,UAAmB,EAAnB,wBAAA,2BAAmB,EAAnB,iCAAmB,EAAnB,IAAmB;YAA9B,IAAA,8BAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA0B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;QAC3D,KAAsB,UAAwB,EAAxB,6BAAA,qCAAwB,EAAxB,sCAAwB,EAAxB,IAAwB;YAAnC,IAAA,mCAAO,EAAN,EAAE,QAAA,EAAE,CAAC,QAAA;YAA+B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;SAAA;IACpE,CAAC;IApCD,sBAAI,qCAAK;aAAT;YACI,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAqB,EAA9C,CAA8C,CAAC,CAAC;QAC/E,CAAC;;;OAAA;IAED,sBAAI,0CAAU;aAAd;YACI,IAAI,IAAI,CAAC,WAAW;gBAAE,OAAO,IAAI,CAAC,WAAW,CAAC;YAC9C,IAAM,UAAU,GAAG,IAAI,GAAG,EAAU,CAAC;YACrC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAC1B,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;gBAC/D,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAnB,CAAmB,CAAC,CAAC;YACnE,CAAC,CAAC,CAAC;YACH,IAAI,CAAC,WAAW,GAAG,UAAU,CAAC;YAC9B,OAAO,UAAU,CAAC;QACtB,CAAC;;;OAAA;IAED,sBAAI,gDAAgB;aAApB;YACI,IAAI,IAAI,CAAC,iBAAiB;gBAAE,OAAO,IAAI,CAAC,iBAAiB,CAAC;YAC1D,IAAM,gBAAgB,GAAG,IAAI,GAAG,EAAU,CAAC;YAC3C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAY;;oBAAV,QAAQ,cAAA;gBAAO,OAAA,MAAA,QAAQ,CAAC,gBAAgB,0CAAE,OAAO,CAAC,UAAA,GAAG,IAAI,OAAA,gBAAgB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAzB,CAAyB,CAAC,CAAA;aAAA,CAAC,CAAC;YAC3G,IAAI,CAAC,iBAAiB,GAAG,gBAAgB,CAAC;YAC1C,OAAO,gBAAgB,CAAC;QAC5B,CAAC;;;OAAA;IAED,sBAAI,uCAAO;aAAX;YACI,IAAI,IAAI,CAAC,QAAQ;gBAAE,OAAO,IAAI,CAAC,QAAQ,CAAC;YACxC,IAAM,OAAO,GAA+B,EAAE,CAAC;YAC/C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAC,EAAkB;oBAAhB,IAAI,UAAA,EAAE,QAAQ,cAAA;gBAAO,OAAA,OAAO,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC;YAA7D,CAA6D,CAAC,CAAC;YAC1G,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC;YACxB,OAAO,OAAO,CAAC;QACnB,CAAC;;;OAAA;IAOA,CAAC;IAEM,mCAAM,GAAd;QACI,IAAI,CAAC,WAAW,GAAG,SAAS,CAAC;QAC7B,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAC;QACnC,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAC;IAC9B,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY,EAAE,QAA4B;QAC1C,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAClC,CAAC;IAED,mCAAM,GAAN,UAAO,IAAY;QACf,IAAI,CAAC,MAAM,EAAE,CAAC;QACd,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,IAAI,EAAf,CAAe,CAAC,EAAE,CAAC,CAAC,CAAC;QACjE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;IAED,iCAAI,GAAJ,UAAK,IAAc,EAAE,eAA8E;QAC/F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxC,IAAA,QAAQ,GAAK,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,SAAlB,CAAmB;YAEnC,IAAI,MAAM,GAAG,KAAK,CAAC;YACnB,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;iBAC5F,IAAI,QAAQ,CAAC,gBAAgB,IAAI,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,IAAI,CAAC;YACtG,IAAI,MAAM,IAAI,CAAC,CAAC,QAAQ,CAAC,YAAY,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC,IAAI,CAAC,CAAC;gBAAE,OAAO,QAAQ,CAAC;SAChH;QACD,OAAO;IACX,CAAC;IAED,gCAAG,GAAH,UAAI,IAAY;QACZ,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YACrB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAE,CAAC;SAC/B;aAAM;YACH,MAAM,IAAI,KAAK,CAAC,oCAA6B,IAAI,MAAG,CAAC,CAAC;SACzD;IACL,CAAC;IAED,sBAAI,oCAAI;aAAR;YACI,OAAO,IAAI,CAAC,KAAK,CAAC;QACtB,CAAC;;;OAAA;IACL,yBAAC;AAAD,CAAC,AAtFD,IAsFC;AAtFY,gDAAkB"}

package/lib/commonjs/mol-plugin-state/formats/shape.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ export declare const PlyProvider: {
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>) => Promise<{
+    parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>) => Promise<{
         format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
@@ -26,7 +26,7 @@ export declare const BuiltInShapeFormats: readonly [readonly ["ply", {
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>) => Promise<{
+    parse: (plugin: PluginContext, data: StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>) => Promise<{
         format: import("../../mol-state").StateObjectSelector<PluginStateObject.Format.Ply, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Ply, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         shape: import("../../mol-state").StateObjectSelector<PluginStateObject.Shape.Provider, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ply, PluginStateObject.Shape.Provider, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;

package/lib/commonjs/mol-plugin-state/formats/structure.d.ts CHANGED Viewed

@@ -10,7 +10,7 @@ export declare const PsfProvider: {
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<{
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
         format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
@@ -20,21 +20,21 @@ export declare const DcdProvider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
 };
 export declare const XtcProvider: {
     label: string;
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
 };
 export declare const BuiltInStructureFormats: readonly [readonly ["psf", {
     label: string;
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<{
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<{
         format: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Format.Psf, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Data.String, import("../objects").PluginStateObject.Format.Psf, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         topology: import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-state/transformer").StateTransformer<import("../objects").PluginStateObject.Format.Psf, import("../objects").PluginStateObject.Molecule.Topology, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
@@ -43,12 +43,12 @@ export declare const BuiltInStructureFormats: readonly [readonly ["psf", {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
 }], readonly ["xtc", {
     label: string;
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.Binary | import("../objects").PluginStateObject.Data.String>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
+    parse: (plugin: import("../../mol-plugin/context").PluginContext, data: import("../../mol-state").StateObjectRef<import("../objects").PluginStateObject.Data.String | import("../objects").PluginStateObject.Data.Binary>) => Promise<import("../../mol-state").StateObjectSelector<import("../objects").PluginStateObject.Molecule.Coordinates, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>>;
 }]];
 export declare type BuildInStructureFormat = (typeof BuiltInStructureFormats)[number][0];

package/lib/commonjs/mol-plugin-state/formats/volume.d.ts CHANGED Viewed

@@ -20,7 +20,7 @@ export declare const Ccp4Provider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Ccp4, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.Binary, PluginStateObject.Format.Ccp4, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ccp4, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             voxelSize: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
@@ -35,7 +35,7 @@ export declare const Dsn6Provider: {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Dsn6, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.Binary, PluginStateObject.Format.Dsn6, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Dsn6, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             voxelSize: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
@@ -50,7 +50,7 @@ export declare const DxProvider: {
     category: string;
     stringExtensions: string[];
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Dx, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
     visuals: typeof defaultVisuals;
@@ -60,7 +60,7 @@ export declare const CubeProvider: {
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Cube, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Cube, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Cube, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             dataIndex: number;
@@ -69,14 +69,14 @@ export declare const CubeProvider: {
         structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Molecule.Model, PluginStateObject.Molecule.Structure, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             type: import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-                ijkMin: any;
-                ijkMax: any;
-            }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                ijkMin: any;
+                ijkMax: any;
+            }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
             }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
@@ -102,7 +102,7 @@ export declare const DscifProvider: {
     stringExtensions: string[];
     binaryExtensions: string[];
     isApplicable: (info: import("../../mol-util/file-info").FileInfo, data: string | Uint8Array) => boolean;
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: DsCifParams | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: DsCifParams | undefined) => Promise<{
         volumes: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
     }>;
     visuals: (plugin: PluginContext, data: {
@@ -114,7 +114,7 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Ccp4, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.Binary, PluginStateObject.Format.Ccp4, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Ccp4, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             voxelSize: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
@@ -128,7 +128,7 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
     description: string;
     category: string;
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Dsn6, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.Binary, PluginStateObject.Format.Dsn6, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Dsn6, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             voxelSize: import("../../mol-math/linear-algebra/3d/vec3").Vec3;
@@ -141,7 +141,7 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
     description: string;
     category: string;
     stringExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         format: StateObjectSelector<PluginStateObject.Format.Cube, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Data.String, PluginStateObject.Format.Cube, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Cube, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             dataIndex: number;
@@ -150,14 +150,14 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
         structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Molecule.Model, PluginStateObject.Molecule.Structure, import("../../mol-util/param-definition").ParamDefinition.Normalize<{
             type: import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-                ijkMin: any;
-                ijkMax: any;
-            }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
                 id: any;
             }>, "assembly"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
-            }>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
+                ijkMin: any;
+                ijkMax: any;
+            }>, "symmetry"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
             }>, "model"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 dynamicBonds: any;
@@ -178,7 +178,7 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
     category: string;
     stringExtensions: string[];
     binaryExtensions: string[];
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: Params | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: Params | undefined) => Promise<{
         volume: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<PluginStateObject.Format.Dx, PluginStateObject.Volume.Data, import("../../mol-util/param-definition").ParamDefinition.Normalize<{}>>>;
     }>;
     visuals: typeof defaultVisuals;
@@ -189,7 +189,7 @@ export declare const BuiltInVolumeFormats: readonly [readonly ["ccp4", {
     stringExtensions: string[];
     binaryExtensions: string[];
     isApplicable: (info: import("../../mol-util/file-info").FileInfo, data: string | Uint8Array) => boolean;
-    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.Binary | PluginStateObject.Data.String>, params?: DsCifParams | undefined) => Promise<{
+    parse: (plugin: PluginContext, data: import("../../mol-state").StateObjectRef<PluginStateObject.Data.String | PluginStateObject.Data.Binary>, params?: DsCifParams | undefined) => Promise<{
         volumes: StateObjectSelector<PluginStateObject.Volume.Data, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
     }>;
     visuals: (plugin: PluginContext, data: {

package/lib/commonjs/mol-plugin-state/formats/volume.js CHANGED Viewed

@@ -43,6 +43,7 @@ function tryObtainRecommendedIsoValue(plugin, volume) {
                                 return [3 /*break*/, 3];
                             case 2:
                                 e_1 = _a.sent();
+                                console.warn(e_1);
                                 return [3 /*break*/, 3];
                             case 3: return [2 /*return*/];
                         }

package/lib/commonjs/mol-plugin-state/formats/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts CHANGED Viewed

@@ -14,14 +14,14 @@ export declare namespace RootStructureDefinition {
     function getParams(model?: Model, defaultValue?: 'auto' | 'model' | 'assembly' | 'symmetry' | 'symmetry-mates' | 'symmetry-assembly'): {
         type: PD.Mapped<PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
-            ijkMin: Vec3;
-            ijkMax: Vec3;
-        }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
             id: string | undefined;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{
+            ijkMin: Vec3;
+            ijkMax: Vec3;
+        }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;
         }>, "model"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: boolean | undefined;

package/lib/commonjs/mol-plugin-state/helpers/root-structure.js CHANGED Viewed

@@ -23,19 +23,19 @@ var RootStructureDefinition;
 (function (RootStructureDefinition) {
     function getParams(model, defaultValue) {
         var symmetry = model && symmetry_2.ModelSymmetry.Provider.get(model);
-        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, a.id + ": " + (0, string_1.stringToWords)(a.details)]; }) : [];
+        var assemblyIds = symmetry ? symmetry.assemblies.map(function (a) { return [a.id, "".concat(a.id, ": ").concat((0, string_1.stringToWords)(a.details))]; }) : [];
         var showSymm = !symmetry ? true : !geometry_1.SpacegroupCell.isZero(symmetry.spacegroup.cell);
         var operatorOptions = [];
         if (symmetry) {
             var operators = symmetry.spacegroup.operators;
             for (var i = 0, il = operators.length; i < il; i++) {
-                operatorOptions.push([i, i + 1 + ": " + geometry_1.Spacegroup.getOperatorXyz(operators[i])]);
+                operatorOptions.push([i, "".concat(i + 1, ": ").concat(geometry_1.Spacegroup.getOperatorXyz(operators[i]))]);
             }
         }
         var asymIdsOptions = [];
         if (model) {
             model.properties.structAsymMap.forEach(function (v) {
-                var label = v.id === v.auth_id ? v.id : v.id + " [auth " + v.auth_id + "]";
+                var label = v.id === v.auth_id ? v.id : "".concat(v.id, " [auth ").concat(v.auth_id, "]");
                 asymIdsOptions.push([v.id, label]);
             });
         }
@@ -51,11 +51,11 @@ var RootStructureDefinition;
                     operators: param_definition_1.ParamDefinition.ObjectList({
                         index: param_definition_1.ParamDefinition.Select(0, operatorOptions),
                         shift: param_definition_1.ParamDefinition.Vec3((0, linear_algebra_1.Vec3)(), { step: 1 }, { label: 'IJK', fieldLabels: { x: 'I', y: 'J', z: 'K' } })
-                    }, function (e) { return e.index + 1 + "_" + e.shift.map(function (a) { return a + 5; }).join(''); }, {
+                    }, function (e) { return "".concat(e.index + 1, "_").concat(e.shift.map(function (a) { return a + 5; }).join('')); }, {
                         defaultValue: []
                     }),
                     asymIds: param_definition_1.ParamDefinition.MultiSelect([], asymIdsOptions)
-                }, function (e) { return e.asymIds.length + " asym ids, " + e.operators.length + " operators"; }, {
+                }, function (e) { return "".concat(e.asymIds.length, " asym ids, ").concat(e.operators.length, " operators"); }, {
                     defaultValue: []
                 }) }, CommonStructureParams), { isFlat: true })
         };
@@ -96,12 +96,12 @@ var RootStructureDefinition;
                             id = symmetry.assemblies[0].id;
                         }
                         if (!symmetry || symmetry.assemblies.length === 0) {
-                            plugin.log.warn("Model '" + model.entryId + "' has no assembly, returning model structure.");
+                            plugin.log.warn("Model '".concat(model.entryId, "' has no assembly, returning model structure."));
                         }
                         else {
                             asm = symmetry_1.Symmetry.findAssembly(model, id || '');
                             if (!asm) {
-                                plugin.log.warn("Model '" + model.entryId + "' has no assembly called '" + id + "', returning model structure.");
+                                plugin.log.warn("Model '".concat(model.entryId, "' has no assembly called '").concat(id, "', returning model structure."));
                             }
                         }
                         base = structure_1.Structure.ofModel(model, props);
@@ -113,7 +113,7 @@ var RootStructureDefinition;
                         return [4 /*yield*/, structure_1.StructureSymmetry.buildAssembly(base, id).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Assembly " + id, description: structure_1.Structure.elementDescription(s) };
+                        objProps = { label: "Assembly ".concat(id), description: structure_1.Structure.elementDescription(s) };
                         return [2 /*return*/, new objects_1.PluginStateObject.Molecule.Structure(s, objProps)];
                 }
             });
@@ -129,7 +129,7 @@ var RootStructureDefinition;
                         return [4 /*yield*/, structure_1.StructureSymmetry.buildSymmetryRange(base, ijkMin, ijkMax).runInContext(ctx)];
                     case 1:
                         s = _a.sent();
-                        objProps = { label: "Symmetry [" + ijkMin + "] to [" + ijkMax + "]", description: structure_1.Structure.elementDescription(s) };
+                        objProps = { label: "Symmetry [".concat(ijkMin, "] to [").concat(ijkMax, "]"), description: structure_1.Structure.elementDescription(s) };
                         return [2 /*return*/, new objects_1.PluginStateObject.Molecule.Structure(s, objProps)];
                 }
             });
@@ -198,7 +198,7 @@ var RootStructureDefinition;
                 if (params.name === 'symmetry-assembly') {
                     return [2 /*return*/, buildSymmetryAssembly(ctx, model, params.params.generators, symmetry, props)];
                 }
-                throw new Error("Unknown represetation type: " + params.name);
+                throw new Error("Unknown represetation type: ".concat(params.name));
             });
         });
     }

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package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ import { Script } from '../../mol-script/script';
 export declare const StaticStructureComponentTypes: readonly ["all", "polymer", "protein", "nucleic", "water", "ion", "lipid", "branched", "ligand", "non-standard", "coarse"];
 export declare type StaticStructureComponentType = (typeof StaticStructureComponentTypes)[number];
 export declare const StructureComponentParams: () => {
-    type: PD.Mapped<PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "all" | "protein" | "nucleic" | "lipid" | "non-standard" | "coarse", "static"> | PD.NamedParams<Expression, "expression"> | PD.NamedParams<StructureElement.Bundle, "bundle">>;
+    type: PD.Mapped<PD.NamedParams<"all" | "polymer" | "water" | "branched" | "ligand" | "ion" | "lipid" | "coarse" | "protein" | "nucleic" | "non-standard", "static"> | PD.NamedParams<Script, "script"> | PD.NamedParams<StructureElement.Bundle, "bundle"> | PD.NamedParams<Expression, "expression">>;
     nullIfEmpty: PD.Base<boolean | undefined>;
     label: PD.Text<string>;
 };
@@ -21,7 +21,7 @@ export declare type StructureComponentParams = PD.ValuesFor<ReturnType<typeof St
 export declare function createStructureComponent(a: Structure, params: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;
-}): SO.Molecule.Structure | StateObject<any, any>;
+}): StateObject<any, any> | SO.Molecule.Structure;
 export declare function updateStructureComponent(a: Structure, b: SO.Molecule.Structure, oldParams: StructureComponentParams, newParams: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;