npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/mol-io/reader/cif/schema/ccd.js CHANGED Viewed

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.350, IHM 1.17, CARB draft.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.352, IHM 1.17, CARB draft.
  *
  * @author molstar/ciftools package
  */

package/lib/mol-io/reader/cif/schema/cif-core.d.ts CHANGED Viewed

@@ -106,7 +106,7 @@ export declare const CifCore_Schema: {
      * Abstracts. This ordering is used in _chemical_formula.moiety
      * and _chemical_formula.sum.
      *
-     * _chemical_formula.iupac      '[Mo (C O)4 (C18 H33 P)2]'
+     * _chemical_formula.IUPAC      '[Mo (C O)4 (C18 H33 P)2]'
      * _chemical_formula.moiety     'C40 H66 Mo O4 P2'
      * _chemical_formula.structural '((C O)4 (P (C6 H11)3)2)Mo'
      * _chemical_formula.sum         'C40 H66 Mo O4 P2'
@@ -138,7 +138,7 @@ export declare const CifCore_Schema: {
         sum: Schema.Str;
         /**
          * Mass corresponding to the formulae _chemical_formula.structural,
-         * *_iupac, *_moiety or *_sum and, together with the Z value and cell
+         * *_IUPAC, *_moiety or *_sum and, together with the Z value and cell
          * parameters yield the density given as _exptl_crystal.density_diffrn.
          */
         weight: Schema.Float;
@@ -470,7 +470,7 @@ export declare const CifCore_Schema: {
          * A concatenated series of single-letter codes which indicate the
          * refinement restraints or constraints applied to this site. This
          * item should not be used. It has been replaced by
-         * _atom_site.refinement_flags_posn, _adp and _occupancy. It is
+         * _atom_site.refinement_flags_posn, _ADP and _occupancy. It is
          * retained in this dictionary only to provide compatibility with
          * legacy CIFs.
          */
@@ -497,9 +497,9 @@ export declare const CifCore_Schema: {
          * atomic  displacement parameter, U(equiv), in angstroms squared,
          * calculated from anisotropic atomic displacement  parameters.
          *
-         * U(equiv) = (1/3) sum~i~[sum~j~(U^ij^ a*~i~ a*~j~ a~i~ a~j~)]
+         * U(equiv) = (1/3) sum~i~[sum~j~(U^ij^ a*~i~ a*~j~ a~i~.a~j~)]
          *
-         * a  = the real-space cell lengths
+         * a  = the real-space cell vectors
          * a* = the reciprocal-space cell lengths
          * Ref: Fischer, R. X. & Tillmanns, E. (1988). Acta Cryst. C44, 775-776.
          */
@@ -659,8 +659,11 @@ export declare const CifCore_Aliases: {
     'geom_bond.atom_site_label_1': string[];
     'geom_bond.atom_site_label_2': string[];
     'geom_bond.distance': string[];
+    'audit.block_doi': string[];
     'database_code.cod': string[];
     'database_code.csd': string[];
+    'database_code.depnum_ccdc_archive': string[];
+    'database_code.depnum_ccdc_fiz': string[];
     'database_code.icsd': string[];
     'database_code.mdf': string[];
     'database_code.nbs': string[];

package/lib/mol-io/reader/cif/schema/cif-core.js CHANGED Viewed

@@ -110,7 +110,7 @@ export var CifCore_Schema = {
      * Abstracts. This ordering is used in _chemical_formula.moiety
      * and _chemical_formula.sum.
      *
-     * _chemical_formula.iupac      '[Mo (C O)4 (C18 H33 P)2]'
+     * _chemical_formula.IUPAC      '[Mo (C O)4 (C18 H33 P)2]'
      * _chemical_formula.moiety     'C40 H66 Mo O4 P2'
      * _chemical_formula.structural '((C O)4 (P (C6 H11)3)2)Mo'
      * _chemical_formula.sum         'C40 H66 Mo O4 P2'
@@ -142,7 +142,7 @@ export var CifCore_Schema = {
         sum: str,
         /**
          * Mass corresponding to the formulae _chemical_formula.structural,
-         * *_iupac, *_moiety or *_sum and, together with the Z value and cell
+         * *_IUPAC, *_moiety or *_sum and, together with the Z value and cell
          * parameters yield the density given as _exptl_crystal.density_diffrn.
          */
         weight: float,
@@ -474,7 +474,7 @@ export var CifCore_Schema = {
          * A concatenated series of single-letter codes which indicate the
          * refinement restraints or constraints applied to this site. This
          * item should not be used. It has been replaced by
-         * _atom_site.refinement_flags_posn, _adp and _occupancy. It is
+         * _atom_site.refinement_flags_posn, _ADP and _occupancy. It is
          * retained in this dictionary only to provide compatibility with
          * legacy CIFs.
          */
@@ -501,9 +501,9 @@ export var CifCore_Schema = {
          * atomic  displacement parameter, U(equiv), in angstroms squared,
          * calculated from anisotropic atomic displacement  parameters.
          *
-         * U(equiv) = (1/3) sum~i~[sum~j~(U^ij^ a*~i~ a*~j~ a~i~ a~j~)]
+         * U(equiv) = (1/3) sum~i~[sum~j~(U^ij^ a*~i~ a*~j~ a~i~.a~j~)]
          *
-         * a  = the real-space cell lengths
+         * a  = the real-space cell vectors
          * a* = the reciprocal-space cell lengths
          * Ref: Fischer, R. X. & Tillmanns, E. (1988). Acta Cryst. C44, 775-776.
          */
@@ -678,12 +678,21 @@ export var CifCore_Aliases = {
     'geom_bond.distance': [
         'geom_bond_dist',
     ],
+    'audit.block_doi': [
+        'audit_block_DOI',
+    ],
     'database_code.cod': [
         'database_code_COD',
     ],
     'database_code.csd': [
         'database_code_CSD',
     ],
+    'database_code.depnum_ccdc_archive': [
+        'database_code_depnum_CCDC_archive',
+    ],
+    'database_code.depnum_ccdc_fiz': [
+        'database_code_depnum_CCDC_fiz',
+    ],
     'database_code.icsd': [
         'database_code_ICSD',
     ],
@@ -694,6 +703,7 @@ export var CifCore_Aliases = {
         'database_code_NBS',
     ],
     'atom_site.adp_type': [
+        'atom_site_ADP_type',
         'atom_site_thermal_displace_type',
     ],
     'atom_site.label': [

package/lib/mol-io/reader/cif/schema/cif-core.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-io/reader/cif/schema/density-server.d.ts CHANGED Viewed

@@ -10,12 +10,12 @@ export declare const DensityServer_Header_Schema: {
         server_version: Schema.Str;
         datetime_utc: Schema.Str;
         guid: Schema.Str;
-        is_empty: Schema.Aliased<"no" | "n" | "yes" | "y">;
-        has_error: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        is_empty: Schema.Aliased<"y" | "yes" | "no" | "n">;
+        has_error: Schema.Aliased<"y" | "yes" | "no" | "n">;
         error: Schema.Str;
         query_source_id: Schema.Str;
         query_type: Schema.Aliased<"cell" | "box">;
-        query_box_type: Schema.Aliased<"fractional" | "cartesian">;
+        query_box_type: Schema.Aliased<"cartesian" | "fractional">;
         query_box_a: Schema.Tensor;
         query_box_b: Schema.Tensor;
     };

package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts CHANGED Viewed

@@ -23,16 +23,16 @@ export declare const mmCIF_chemCompBond_schema: {
     comp_id: Column.Schema.Str;
     value_order: Column.Schema.Aliased<"sing" | "doub" | "trip" | "quad" | "arom" | "poly" | "delo" | "pi">;
     pdbx_ordinal: Column.Schema.Int;
-    pdbx_stereo_config: Column.Schema.Aliased<"E" | "Z" | "N">;
+    pdbx_stereo_config: Column.Schema.Aliased<"N" | "E" | "Z">;
     pdbx_aromatic_flag: Column.Schema.Aliased<"N" | "Y">;
 };
 /** Has `type` extended with 'Ion' and 'Lipid' */
 export declare const mmCIF_chemComp_schema: {
-    type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+    type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
     formula: Column.Schema.Str;
     formula_weight: Column.Schema.Float;
     id: Column.Schema.Str;
-    mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+    mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
     name: Column.Schema.Str;
     pdbx_synonyms: Column.Schema.List<string>;
 };

package/lib/mol-io/reader/cif/schema/mmcif.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.350, IHM 1.17, CARB draft.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.352, IHM 1.17, CARB draft.
  *
  * @author molstar/ciftools package
  */
@@ -478,7 +478,7 @@ export declare const mmCIF_Schema: {
          * _chem_comp.mon_nstd_parent, _chem_comp.mon_nstd_class and
          * _chem_comp.mon_nstd_details data items.
          */
-        mon_nstd_flag: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * The full name of the component.
          */
@@ -489,7 +489,7 @@ export declare const mmCIF_Schema: {
          * linking monomers, monomers with some type of N-terminal (or 5')
          * cap and monomers with some type of C-terminal (or 3') cap.
          */
-        type: Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other">;
+        type: Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking">;
         /**
          * Synonym list for the component.
          */
@@ -534,7 +534,7 @@ export declare const mmCIF_Schema: {
         /**
          * Stereochemical configuration across a double bond.
          */
-        pdbx_stereo_config: Schema.Aliased<"E" | "Z" | "N">;
+        pdbx_stereo_config: Schema.Aliased<"N" | "E" | "Z">;
         /**
          * A flag indicating an aromatic bond.
          */
@@ -786,12 +786,12 @@ export declare const mmCIF_Schema: {
          * one monomer-to-monomer link different from that implied by
          * _entity_poly.type.
          */
-        nstd_linkage: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        nstd_linkage: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * A flag to indicate whether the polymer contains at least
          * one monomer that is not considered standard.
          */
-        nstd_monomer: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        nstd_monomer: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * The type of the polymer.
          */
@@ -885,7 +885,7 @@ export declare const mmCIF_Schema: {
          * A flag to indicate whether this monomer in the polymer is
          * heterogeneous in sequence.
          */
-        hetero: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * This data item is a pointer to _chem_comp.id in the CHEM_COMP
          * category.
@@ -1886,7 +1886,7 @@ export declare const mmCIF_Schema: {
         /**
          * The identifying content type of the related entry.
          */
-        content_type: Schema.Aliased<"other" | "minimized average structure" | "representative structure" | "ensemble" | "derivative structure" | "native structure" | "associated EM volume" | "other EM volume" | "associated NMR restraints" | "associated structure factors" | "associated SAS data" | "protein target sequence and/or protocol data" | "split" | "re-refinement" | "complete structure" | "unspecified">;
+        content_type: Schema.Aliased<"split" | "other" | "minimized average structure" | "representative structure" | "ensemble" | "derivative structure" | "native structure" | "associated EM volume" | "other EM volume" | "associated NMR restraints" | "associated structure factors" | "associated SAS data" | "protein target sequence and/or protocol data" | "re-refinement" | "complete structure" | "unspecified">;
     };
     /**
      * The PDBX_ENTITY_NONPOLY category provides a mapping between
@@ -1974,7 +1974,7 @@ export declare const mmCIF_Schema: {
          * The value of occupancy flag indicates whether the residue
          * is unobserved (= 1) or the coordinates have an occupancy of zero (=0)
          */
-        occupancy_flag: Schema.Aliased<"0" | "1">;
+        occupancy_flag: Schema.Aliased<"1" | "0">;
         /**
          * Part of the identifier for the unobserved or zero occupancy residue.
          *
@@ -2660,7 +2660,7 @@ export declare const mmCIF_Schema: {
          * A flag to indicate whether this monomer in the entity is
          * heterogeneous in sequence.
          */
-        hetero: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * This data item is a pointer to _chem_comp.id in the CHEM_COMP
          * category.
@@ -2779,7 +2779,7 @@ export declare const mmCIF_Schema: {
          * A flag to indicate whether this monomer in the entity is
          * heterogeneous in sequence.
          */
-        hetero: Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: Schema.Aliased<"y" | "yes" | "no" | "n">;
         /**
          * Pointer to _atom_site.label_asym_id.
          */
@@ -3083,7 +3083,7 @@ export declare const mmCIF_Schema: {
         /**
          * The primitive object used to model this segment.
          */
-        model_object_primitive: Schema.Aliased<"other" | "atomistic" | "sphere" | "gaussian">;
+        model_object_primitive: Schema.Aliased<"other" | "sphere" | "atomistic" | "gaussian">;
         /**
          * The identifier for the starting structural model.
          * This data item is a pointer to _ihm_starting_model_details.starting_model_id
@@ -3343,11 +3343,11 @@ export declare const mmCIF_Schema: {
         /**
          * The type of post modeling analysis being carried out.
          */
-        type: Schema.Aliased<"filter" | "other" | "cluster" | "rescore" | "validation" | "none">;
+        type: Schema.Aliased<"none" | "filter" | "other" | "cluster" | "rescore" | "validation">;
         /**
          * The parameter/feature used in the post modeling analysis.
          */
-        feature: Schema.Aliased<"other" | "none" | "energy/score" | "RMSD" | "dRMSD">;
+        feature: Schema.Aliased<"none" | "other" | "energy/score" | "RMSD" | "dRMSD">;
         /**
          * The number of models at the beginning of the post processing step.
          */
@@ -4595,7 +4595,7 @@ export declare const mmCIF_Schema: {
         /**
          * The type of entity.
          */
-        entity_type: Schema.Aliased<"non-polymer" | "other" | "polymer" | "water">;
+        entity_type: Schema.Aliased<"other" | "non-polymer" | "polymer" | "water">;
     };
     /**
      * Data items in the IHM_POLY_RESIDUE_FEATURE category provides the defintions

package/lib/mol-io/reader/cif/schema/mmcif.js CHANGED Viewed

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.350, IHM 1.17, CARB draft.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.352, IHM 1.17, CARB draft.
  *
  * @author molstar/ciftools package
  */

package/lib/mol-io/reader/cif/schema.js CHANGED Viewed

@@ -21,7 +21,7 @@ export var FieldPath;
     FieldPath.equal = equal;
     function create(category, field, asCanonical) {
         if (asCanonical === void 0) { asCanonical = false; }
-        var p = "" + category + (field ? "." + field : '');
+        var p = "".concat(category).concat(field ? ".".concat(field) : '');
         return asCanonical ? canonical(p) : p;
     }
     FieldPath.create = create;
@@ -80,13 +80,13 @@ function createListColumn(schema, category, key) {
 }
 function createTensorColumn(schema, category, key) {
     var space = schema.space;
-    var zeroOffset = (category.fieldNames.includes(key + "[0]") ||
-        category.fieldNames.includes(key + "[0][0]") ||
-        category.fieldNames.includes(key + "[0][0][0]"));
+    var zeroOffset = (category.fieldNames.includes("".concat(key, "[0]")) ||
+        category.fieldNames.includes("".concat(key, "[0][0]")) ||
+        category.fieldNames.includes("".concat(key, "[0][0][0]")));
     var fst = zeroOffset ? 0 : 1;
-    var namingVariant = (category.fieldNames.includes(key + "_1") ||
-        category.fieldNames.includes(key + "_11") ||
-        category.fieldNames.includes(key + "_111")) ? 'underscore' : 'brackets';
+    var namingVariant = (category.fieldNames.includes("".concat(key, "_1")) ||
+        category.fieldNames.includes("".concat(key, "_11")) ||
+        category.fieldNames.includes("".concat(key, "_111"))) ? 'underscore' : 'brackets';
     var getName = Data.tensorFieldNameGetter(key, space.rank, zeroOffset, namingVariant);
     var first = category.getField(getName(fst, fst, fst)) || Column.Undefined(category.rowCount, schema);
     var value = function (row) { return Data.getTensor(category, space, row, getName); };

package/lib/mol-io/reader/cif/schema.js.map CHANGED Viewed

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package/lib/mol-io/reader/cif/text/parser.js CHANGED Viewed

@@ -584,7 +584,7 @@ function handleLoop(tokenizer, ctx) {
                         return [2 /*return*/, {
                                 hasError: true,
                                 errorLine: tokenizer.lineNumber,
-                                errorMessage: "The number of values for loop starting at line " + loopLine + " is not a multiple of the number of columns."
+                                errorMessage: "The number of values for loop starting at line ".concat(loopLine, " is not a multiple of the number of columns.")
                             }];
                     }
                     rowCount = (state.tokenCount / fieldCount) | 0;
@@ -704,7 +704,7 @@ function parseInternal(data, runtimeCtx) {
                 case 7:
                     // Check if the latest save frame was closed.
                     if (tokenizer.inSaveFrame) {
-                        return [2 /*return*/, error(tokenizer.lineNumber, "Unfinished save frame (" + saveFrame.header + ").")];
+                        return [2 /*return*/, error(tokenizer.lineNumber, "Unfinished save frame (".concat(saveFrame.header, ")."))];
                     }
                     if (blockCtx.categoryNames.length > 0 || saveFrames.length > 0) {
                         dataBlocks.push(CifBlock(blockCtx, blockHeader, saveFrames));

package/lib/mol-io/reader/cif/text/parser.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-io/reader/dcd/parser.js CHANGED Viewed

@@ -122,7 +122,7 @@ export function _parseDcd(data) {
         // xyz coordinates
         for (var j = 0; j < 3; ++j) {
             if (dv.getInt32(nextPos, ef) !== natom4) {
-                throw new Error("dcd bad format, coord block start: " + i + ", " + j);
+                throw new Error("dcd bad format, coord block start: ".concat(i, ", ").concat(j));
             }
             nextPos += 4; // block start
             var c = new Float32Array(data.buffer, nextPos, natom);
@@ -134,7 +134,7 @@ export function _parseDcd(data) {
                 frame.z = c;
             nextPos += natom4;
             if (dv.getInt32(nextPos, ef) !== natom4) {
-                throw new Error("dcd bad format, coord block end: " + i + ", " + j);
+                throw new Error("dcd bad format, coord block end: ".concat(i, ", ").concat(j));
             }
             nextPos += 4; // block end
         }

package/lib/mol-io/reader/dcd/parser.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"parser.js","sourceRoot":"","sources":["../../../../src/mol-io/reader/dcd/parser.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,YAAY,IAAI,MAAM,EAAE,MAAM,WAAW,CAAC;AACnD,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AAEzC,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AA6BpD,MAAM,UAAU,SAAS,CAAC,IAAgB;IACtC,qEAAqE;IAErE,0CAA0C;IAC1C,gEAAgE;IAChE,0EAA0E;IAC1E,6EAA6E;IAC7E,mCAAmC;IACnC,uEAAuE;IACvE,6EAA6E;IAC7E,wBAAwB;IACxB,4BAA4B;IAC5B,wBAAwB;IACxB,6EAA6E;IAC7E,QAAQ;IACR,SAAS;IACT,MAAM;IACN,6EAA6E;IAC7E,mCAAmC;IACnC,kBAAkB;IAClB,kBAAkB;IAClB,6EAA6E;IAE7E,IAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAErC,IAAM,MAAM,GAAuB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IACvD,IAAM,MAAM,GAAe,EAAE,CAAC;IAE9B,IAAI,OAAO,GAAG,CAAC,CAAC;IAEhB,eAAe;IAEf,IAAM,OAAO,GAAG,IAAI,UAAU,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC;IACnD,IAAM,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,iBAAiB;IAC3D,+DAA+D;IAC/D,IAAI,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,EAAE;QACnB,IAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE;YAC3B,EAAE,CAAC,UAAU,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;SAC5C;KACJ;IACD,IAAI,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;KACzD;IAED,uCAAuC;IACvC,IAAM,YAAY,GAAG,MAAM,CAAC,YAAY,CACpC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,EAC9B,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,CACjC,CAAC;IACF,IAAI,YAAY,KAAK,MAAM,EAAE;QACzB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;KACpD;IACD,IAAI,QAAQ,GAAG,KAAK,CAAC;IACrB,IAAI,UAAU,GAAG,KAAK,CAAC;IACvB,IAAI,QAAQ,GAAG,KAAK,CAAC;IACrB,4CAA4C;IAC5C,IAAI,OAAO,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE;QACnB,QAAQ,GAAG,IAAI,CAAC;QAChB,IAAI,OAAO,CAAC,EAAE,CAAC,KAAK,CAAC;YAAE,UAAU,GAAG,IAAI,CAAC;QACzC,IAAI,OAAO,CAAC,EAAE,CAAC,KAAK,CAAC;YAAE,QAAQ,GAAG,IAAI,CAAC;KAC1C;IACD,MAAM,CAAC,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;IACzB,MAAM,CAAC,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;IAC3B,MAAM,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;IAC1B,MAAM,CAAC,KAAK,GAAG,OAAO,CAAC,EAAE,CAAC,CAAC;IAE3B,IAAI,QAAQ,EAAE;QACV,MAAM,CAAC,KAAK,GAAG,EAAE,CAAC,UAAU,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;KACxC;SAAM;QACH,MAAM,CAAC,KAAK,GAAG,EAAE,CAAC,UAAU,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;KACxC;IAED,IAAI,OAAO,CAAC,EAAE,CAAC,KAAK,EAAE,EAAE;QACpB,MAAM,IAAI,KAAK,CAAC,kCAAkC,CAAC,CAAC;KACvD;IACD,OAAO,GAAG,OAAO,GAAG,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC;IAE/B,cAAc;IAEd,IAAM,QAAQ,GAAG,EAAE,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;IAC1C,IAAM,UAAU,GAAG,OAAO,GAAG,CAAC,CAAC;IAC/B,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE;QAC3B,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;KACxD;IACD,MAAM,CAAC,KAAK,GAAG,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC;IAClE,IAAI,EAAE,CAAC,QAAQ,CAAC,UAAU,GAAG,QAAQ,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,KAAK,QAAQ,EAAE;QAC7D,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAC;KACtD;IAED,OAAO,GAAG,OAAO,GAAG,QAAQ,GAAG,CAAC,CAAC;IAEjC,cAAc;IAEd,IAAI,EAAE,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE;QAChC,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;KACxD;IACD,MAAM,CAAC,KAAK,GAAG,EAAE,CAAC,QAAQ,CAAC,OAAO,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC;IAC5C,IAAI,EAAE,CAAC,QAAQ,CAAC,OAAO,GAAG,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE;QACpC,MAAM,IAAI,KAAK,CAAC,iCAAiC,CAAC,CAAC;KACtD;IACD,OAAO,GAAG,OAAO,GAAG,CAAC,GAAG,CAAC,CAAC;IAE1B,oBAAoB;IAEpB,IAAI,MAAM,CAAC,KAAK,GAAG,CAAC,EAAE;QAClB,mDAAmD;QACnD,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAC;KACxE;IAED,SAAS;IACT,IAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IAC3B,IAAM,MAAM,GAAG,KAAK,GAAG,CAAC,CAAC;IAEzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;QACzC,IAAM,KAAK,GAAsB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QACrD,KAAK,CAAC,YAAY,GAAG,KAAK,CAAC;QAE3B,IAAI,UAAU,EAAE;YACZ,OAAO,IAAI,CAAC,CAAC,CAAC,cAAc;YAC5B,KAAK,CAAC,IAAI,GAAG;gBACT,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC;gBAC1B,EAAE,CAAC,UAAU,CAAC,OAAO,GAAG,CAAC,EAAE,EAAE,CAAC;gBAC9B,EAAE,CAAC,UAAU,CAAC,OAAO,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;gBAClC,EAAE,CAAC,UAAU,CAAC,OAAO,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;gBAClC,EAAE,CAAC,UAAU,CAAC,OAAO,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;gBAClC,EAAE,CAAC,UAAU,CAAC,OAAO,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;aAC5B,CAAC;YACX,OAAO,IAAI,EAAE,CAAC;YACd,OAAO,IAAI,CAAC,CAAC,CAAC,YAAY;SAC7B;QAED,kBAAkB;QAClB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;YACxB,IAAI,EAAE,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,KAAK,MAAM,EAAE;gBACrC,MAAM,IAAI,KAAK,CAAC,6CAAsC,CAAC,eAAK,CAAC,CAAE,CAAC,CAAC;aACpE;YACD,OAAO,IAAI,CAAC,CAAC,CAAC,cAAc;YAC5B,IAAM,CAAC,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC;YACxD,IAAI,CAAC,KAAK,CAAC;gBAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC;iBACpB,IAAI,CAAC,KAAK,CAAC;gBAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC;;gBACzB,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC;YAEjB,OAAO,IAAI,MAAM,CAAC;YAClB,IAAI,EAAE,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,KAAK,MAAM,EAAE;gBACrC,MAAM,IAAI,KAAK,CAAC,2CAAoC,CAAC,eAAK,CAAC,CAAE,CAAC,CAAC;aAClE;YACD,OAAO,IAAI,CAAC,CAAC,CAAC,YAAY;SAC7B;QAED,IAAI,QAAQ,EAAE;YACV,IAAM,KAAK,GAAG,EAAE,CAAC,QAAQ,CAAC,OAAO,EAAE,EA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package/lib/mol-io/reader/ply/schema.d.ts CHANGED Viewed

@@ -24,7 +24,7 @@ export declare const PlyTypeByteLength: {
 };
 export declare type PlyType = keyof typeof PlyTypeByteLength;
 export declare const PlyTypes: Set<string>;
-export declare function PlyType(str: string): "int" | "float" | "ushort" | "float32" | "int32" | "uint32" | "uint16" | "char" | "uchar" | "short" | "uint" | "double" | "int8" | "uint8" | "int16" | "float64";
+export declare function PlyType(str: string): "double" | "float" | "char" | "int" | "uint8" | "int8" | "uint16" | "int16" | "uint32" | "int32" | "float32" | "ushort" | "uchar" | "short" | "uint" | "float64";
 export interface PlyFile {
     readonly comments: ReadonlyArray<string>;
     readonly elementNames: ReadonlyArray<string>;

package/lib/mol-io/reader/ply/schema.js CHANGED Viewed

@@ -26,7 +26,7 @@ export var PlyTypeByteLength = {
 export var PlyTypes = new Set(Object.keys(PlyTypeByteLength));
 export function PlyType(str) {
     if (!PlyTypes.has(str))
-        throw new Error("unknown ply type '" + str + "'");
+        throw new Error("unknown ply type '".concat(str, "'"));
     return str;
 }
 export function PlyFile(elements, elementNames, comments) {

package/lib/mol-io/reader/ply/schema.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"schema.js","sourceRoot":"","sources":["../../../../src/mol-io/reader/ply/schema.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,yCAAyC;AACzC,kDAAkD;AAElD,MAAM,CAAC,IAAM,iBAAiB,GAAG;IAC7B,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,KAAK,EAAE,CAAC;IACR,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IAEX,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,SAAS,EAAE,CAAC;IACZ,SAAS,EAAE,CAAC;CACf,CAAC;AAEF,MAAM,CAAC,IAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC;AAChE,MAAM,UAAU,OAAO,CAAC,GAAW;IAC/B,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC;QAAE,MAAM,IAAI,KAAK,CAAC,~~uBAAqB~~,GAAG,MAAG,CAAC,CAAC;IACrE,OAAO,GAAc,CAAC;AAC1B,CAAC;AAQD,MAAM,UAAU,OAAO,CAAC,QAAsB,EAAE,YAAsB,EAAE,QAAkB;IACtF,IAAM,UAAU,GAAG,IAAI,GAAG,EAAsB,CAAC;IACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACnD,UAAU,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;KAChD;IACD,OAAO;QACH,QAAQ,UAAA;QACR,YAAY,cAAA;QACZ,UAAU,EAAE,UAAC,IAAY;YACrB,OAAO,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAChC,CAAC;KACJ,CAAC;AACN,CAAC"}
1	+ {"version":3,"file":"schema.js","sourceRoot":"","sources":["../../../../src/mol-io/reader/ply/schema.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,yCAAyC;AACzC,kDAAkD;AAElD,MAAM,CAAC,IAAM,iBAAiB,GAAG;IAC7B,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,KAAK,EAAE,CAAC;IACR,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IAEX,MAAM,EAAE,CAAC;IACT,OAAO,EAAE,CAAC;IACV,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,OAAO,EAAE,CAAC;IACV,QAAQ,EAAE,CAAC;IACX,SAAS,EAAE,CAAC;IACZ,SAAS,EAAE,CAAC;CACf,CAAC;AAEF,MAAM,CAAC,IAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC;AAChE,MAAM,UAAU,OAAO,CAAC,GAAW;IAC/B,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC;QAAE,MAAM,IAAI,KAAK,CAAC,4BAAqB,GAAG,MAAG,CAAC,CAAC;IACrE,OAAO,GAAc,CAAC;AAC1B,CAAC;AAQD,MAAM,UAAU,OAAO,CAAC,QAAsB,EAAE,YAAsB,EAAE,QAAkB;IACtF,IAAM,UAAU,GAAG,IAAI,GAAG,EAAsB,CAAC;IACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACnD,UAAU,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;KAChD;IACD,OAAO;QACH,QAAQ,UAAA;QACR,YAAY,cAAA;QACZ,UAAU,EAAE,UAAC,IAAY;YACrB,OAAO,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAChC,CAAC;KACJ,CAAC;AACN,CAAC"}

package/lib/mol-io/reader/result.js CHANGED Viewed

@@ -24,7 +24,7 @@ var ReaderResult;
         }
         Error.prototype.toString = function () {
             if (this.line >= 0) {
-                return "[Line " + this.line + "] " + this.message;
+                return "[Line ".concat(this.line, "] ").concat(this.message);
             }
             return this.message;
         };