molstar 2.3.7 → 2.4.1

package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js

@@ -16,6 +16,7 @@ import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { Box3D } from '../../../mol-math/geometry';
 import { accumulate_frag } from '../../../mol-gl/shader/compute/color-smoothing/accumulate.frag';
 import { accumulate_vert } from '../../../mol-gl/shader/compute/color-smoothing/accumulate.vert';
+import { isWebGL2 } from '../../../mol-gl/webgl/compat';
 export var ColorAccumulateSchema = {
     drawCount: ValueSpec('number'),
     instanceCount: ValueSpec('number'),
@@ -30,7 +31,7 @@ export var ColorAccumulateSchema = {
     tPosition: TextureSpec('texture', 'rgba', 'float', 'nearest'),
     tGroup: TextureSpec('texture', 'rgba', 'float', 'nearest'),
     uColorTexDim: UniformSpec('v2'),
-    tColor: TextureSpec('image-uint8', 'rgb', 'ubyte', 'nearest'),
+    tColor: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'),
     dColorType: DefineSpec('string', ['group', 'groupInstance', 'vertex', 'vertexInstance']),
     uCurrentSlice: UniformSpec('f'),
     uCurrentX: UniformSpec('f'),
@@ -40,6 +41,7 @@ export var ColorAccumulateSchema = {
     uResolution: UniformSpec('f', 'material'),
 };
 var ColorAccumulateName = 'color-accumulate';
+var ColorCountName = 'color-count';
 function getSampleBuffer(sampleCount, stride) {
     var sampleBuffer = new Float32Array(sampleCount);
     for (var i = 0; i < sampleCount; ++i) {
@@ -66,7 +68,7 @@ function getAccumulateRenderable(ctx, input, box, resolution, stride) {
         ValueCell.update(v.uGeoTexDim, Vec2.set(v.uGeoTexDim.ref.value, input.positionTexture.getWidth(), input.positionTexture.getHeight()));
         ValueCell.update(v.tPosition, input.positionTexture);
         ValueCell.update(v.tGroup, input.groupTexture);
-        ValueCell.update(v.uColorTexDim, Vec2.set(v.uColorTexDim.ref.value, input.colorData.width, input.colorData.height));
+        ValueCell.update(v.uColorTexDim, Vec2.set(v.uColorTexDim.ref.value, input.colorData.getWidth(), input.colorData.getHeight()));
         ValueCell.update(v.tColor, input.colorData);
         ValueCell.updateIfChanged(v.dColorType, input.colorType);
         ValueCell.updateIfChanged(v.uCurrentSlice, 0);
@@ -98,7 +100,7 @@ function createAccumulateRenderable(ctx, input, box, resolution, stride) {
         uGeoTexDim: ValueCell.create(Vec2.create(input.positionTexture.getWidth(), input.positionTexture.getHeight())),
         tPosition: ValueCell.create(input.positionTexture),
         tGroup: ValueCell.create(input.groupTexture),
-        uColorTexDim: ValueCell.create(Vec2.create(input.colorData.width, input.colorData.height)),
+        uColorTexDim: ValueCell.create(Vec2.create(input.colorData.getWidth(), input.colorData.getHeight())),
         tColor: ValueCell.create(input.colorData),
         dColorType: ValueCell.create(input.colorType),
         uCurrentSlice: ValueCell.create(0),
@@ -109,7 +111,7 @@ function createAccumulateRenderable(ctx, input, box, resolution, stride) {
         uResolution: ValueCell.create(resolution),
     };
     var schema = __assign({}, ColorAccumulateSchema);
-    var shaderCode = ShaderCode('accumulate', accumulate_vert, accumulate_frag);
+    var shaderCode = ShaderCode('accumulate', accumulate_vert, accumulate_frag, { drawBuffers: 'required' });
     var renderItem = createComputeRenderItem(ctx, 'points', shaderCode, schema, values);
     return createComputeRenderable(renderItem, values);
 }
@@ -125,22 +127,23 @@ function setAccumulateDefaults(ctx) {
     state.blendEquation(gl.FUNC_ADD);
 }
 //
-export var ColorNormalizeSchema = __assign(__assign({}, QuadSchema), { tColor: TextureSpec('texture', 'rgba', 'float', 'nearest'), uTexSize: UniformSpec('v2') });
+export var ColorNormalizeSchema = __assign(__assign({}, QuadSchema), { tColor: TextureSpec('texture', 'rgba', 'float', 'nearest'), tCount: TextureSpec('texture', 'alpha', 'float', 'nearest'), uTexSize: UniformSpec('v2') });
 var ColorNormalizeName = 'color-normalize';
-function getNormalizeRenderable(ctx, color) {
+function getNormalizeRenderable(ctx, color, count) {
     if (ctx.namedComputeRenderables[ColorNormalizeName]) {
         var v = ctx.namedComputeRenderables[ColorNormalizeName].values;
         ValueCell.update(v.tColor, color);
+        ValueCell.update(v.tCount, count);
         ValueCell.update(v.uTexSize, Vec2.set(v.uTexSize.ref.value, color.getWidth(), color.getHeight()));
         ctx.namedComputeRenderables[ColorNormalizeName].update();
     }
     else {
-        ctx.namedComputeRenderables[ColorNormalizeName] = createColorNormalizeRenderable(ctx, color);
+        ctx.namedComputeRenderables[ColorNormalizeName] = createColorNormalizeRenderable(ctx, color, count);
     }
     return ctx.namedComputeRenderables[ColorNormalizeName];
 }
-function createColorNormalizeRenderable(ctx, color) {
-    var values = __assign(__assign({}, QuadValues), { tColor: ValueCell.create(color), uTexSize: ValueCell.create(Vec2.create(color.getWidth(), color.getHeight())) });
+function createColorNormalizeRenderable(ctx, color, count) {
+    var values = __assign(__assign({}, QuadValues), { tColor: ValueCell.create(color), tCount: ValueCell.create(count), uTexSize: ValueCell.create(Vec2.create(color.getWidth(), color.getHeight())) });
     var schema = __assign({}, ColorNormalizeSchema);
     var shaderCode = ShaderCode('normalize', quad_vert, normalize_frag);
     var renderItem = createComputeRenderItem(ctx, 'triangles', shaderCode, schema, values);
@@ -179,6 +182,9 @@ function getTexture2dSize(gridDim) {
     return { texDimX: texDimX, texDimY: texDimY, texRows: texRows, texCols: texCols, powerOfTwoSize: texDimY < powerOfTwoSize ? powerOfTwoSize : powerOfTwoSize * 2 };
 }
 export function calcTextureMeshColorSmoothing(input, resolution, stride, webgl, texture) {
+    var drawBuffers = webgl.extensions.drawBuffers;
+    if (!drawBuffers)
+        throw new Error('need WebGL draw buffers');
     var gl = webgl.gl, resources = webgl.resources, state = webgl.state, _a = webgl.extensions, colorBufferHalfFloat = _a.colorBufferHalfFloat, textureHalfFloat = _a.textureHalfFloat;
     var isInstanceType = input.colorType.endsWith('Instance');
     var box = Box3D.fromSphere3D(Box3D(), isInstanceType ? input.boundingSphere : input.invariantBoundingSphere);
@@ -191,24 +197,45 @@ export function calcTextureMeshColorSmoothing(input, resolution, stride, webgl,
     var dx = gridDim[0], dy = gridDim[1], dz = gridDim[2];
     var _b = getTexture2dSize(gridDim), width = _b.texDimX, height = _b.texDimY, texCols = _b.texCols;
     // console.log({ width, height, texCols, dim, resolution });
-    if (!webgl.namedTextures[ColorAccumulateName]) {
-        webgl.namedTextures[ColorAccumulateName] = colorBufferHalfFloat && textureHalfFloat
-            ? resources.texture('image-float16', 'rgba', 'fp16', 'nearest')
-            : resources.texture('image-float32', 'rgba', 'float', 'nearest');
-    }
-    var accumulateTexture = webgl.namedTextures[ColorAccumulateName];
-    accumulateTexture.define(width, height);
-    var accumulateRenderable = getAccumulateRenderable(webgl, input, box, resolution, stride);
-    //
-    var _c = accumulateRenderable.values, uCurrentSlice = _c.uCurrentSlice, uCurrentX = _c.uCurrentX, uCurrentY = _c.uCurrentY;
     if (!webgl.namedFramebuffers[ColorAccumulateName]) {
         webgl.namedFramebuffers[ColorAccumulateName] = webgl.resources.framebuffer();
     }
     var framebuffer = webgl.namedFramebuffers[ColorAccumulateName];
+    if (isWebGL2(gl)) {
+        if (!webgl.namedTextures[ColorAccumulateName]) {
+            webgl.namedTextures[ColorAccumulateName] = colorBufferHalfFloat && textureHalfFloat
+                ? resources.texture('image-float16', 'rgba', 'fp16', 'nearest')
+                : resources.texture('image-float32', 'rgba', 'float', 'nearest');
+        }
+        if (!webgl.namedTextures[ColorCountName]) {
+            webgl.namedTextures[ColorCountName] = resources.texture('image-float32', 'alpha', 'float', 'nearest');
+        }
+    }
+    else {
+        // in webgl1 drawbuffers must be in the same format for some reason
+        // this is quite wasteful but good enough for medium size meshes
+        if (!webgl.namedTextures[ColorAccumulateName]) {
+            webgl.namedTextures[ColorAccumulateName] = resources.texture('image-float32', 'rgba', 'float', 'nearest');
+        }
+        if (!webgl.namedTextures[ColorCountName]) {
+            webgl.namedTextures[ColorCountName] = resources.texture('image-float32', 'rgba', 'float', 'nearest');
+        }
+    }
+    var accumulateTexture = webgl.namedTextures[ColorAccumulateName];
+    var countTexture = webgl.namedTextures[ColorCountName];
+    accumulateTexture.define(width, height);
+    countTexture.define(width, height);
+    accumulateTexture.attachFramebuffer(framebuffer, 0);
+    countTexture.attachFramebuffer(framebuffer, 1);
+    var accumulateRenderable = getAccumulateRenderable(webgl, input, box, resolution, stride);
+    state.currentRenderItemId = -1;
     framebuffer.bind();
+    drawBuffers.drawBuffers([
+        drawBuffers.COLOR_ATTACHMENT0,
+        drawBuffers.COLOR_ATTACHMENT1,
+    ]);
+    var _c = accumulateRenderable.values, uCurrentSlice = _c.uCurrentSlice, uCurrentX = _c.uCurrentX, uCurrentY = _c.uCurrentY;
     setAccumulateDefaults(webgl);
-    state.currentRenderItemId = -1;
-    accumulateTexture.attachFramebuffer(framebuffer, 0);
     gl.viewport(0, 0, width, height);
     gl.scissor(0, 0, width, height);
     gl.clear(gl.COLOR_BUFFER_BIT);
@@ -232,18 +259,26 @@ export function calcTextureMeshColorSmoothing(input, resolution, stride, webgl,
         ++currCol;
         currX += dx;
     }
+    accumulateTexture.detachFramebuffer(framebuffer, 0);
+    countTexture.detachFramebuffer(framebuffer, 1);
+    drawBuffers.drawBuffers([gl.COLOR_ATTACHMENT0, gl.NONE]);
     // const accImage = new Float32Array(width * height * 4);
     // accumulateTexture.attachFramebuffer(framebuffer, 0);
     // webgl.readPixels(0, 0, width, height, accImage);
     // console.log(accImage);
-    // printTextureImage({ array: accImage, width, height }, 1 / 4);
+    // printTextureImage({ array: accImage, width, height }, { scale: 1 });
+    // const cntImage = new Float32Array(width * height * 4);
+    // countTexture.attachFramebuffer(framebuffer, 0);
+    // webgl.readPixels(0, 0, width, height, cntImage);
+    // console.log(cntImage);
+    // printTextureImage({ array: cntImage, width, height }, { scale: 1 });
     // normalize
     if (!texture)
-        texture = resources.texture('image-uint8', 'rgb', 'ubyte', 'linear');
+        texture = resources.texture('image-uint8', 'rgba', 'ubyte', 'linear');
     texture.define(width, height);
-    var normalizeRenderable = getNormalizeRenderable(webgl, accumulateTexture);
-    setNormalizeDefaults(webgl);
+    var normalizeRenderable = getNormalizeRenderable(webgl, accumulateTexture, countTexture);
     state.currentRenderItemId = -1;
+    setNormalizeDefaults(webgl);
     texture.attachFramebuffer(framebuffer, 0);
     gl.viewport(0, 0, width, height);
     gl.scissor(0, 0, width, height);
@@ -253,9 +288,106 @@ export function calcTextureMeshColorSmoothing(input, resolution, stride, webgl,
     // texture.attachFramebuffer(framebuffer, 0);
     // webgl.readPixels(0, 0, width, height, normImage);
     // console.log(normImage);
-    // printTextureImage({ array: normImage, width, height }, 1 / 4);
+    // printTextureImage({ array: normImage, width, height }, { scale: 1 });
     var gridTransform = Vec4.create(min[0], min[1], min[2], scaleFactor);
     var type = isInstanceType ? 'volumeInstance' : 'volume';
     return { texture: texture, gridDim: gridDim, gridTexDim: Vec2.create(width, height), gridTransform: gridTransform, type: type };
 }
+//
+var ColorSmoothingRgbName = 'color-smoothing-rgb';
+var ColorSmoothingRgbaName = 'color-smoothing-rgba';
+var ColorSmoothingAlphaName = 'color-smoothing-alpha';
+function isSupportedColorType(x) {
+    return x === 'group' || x === 'groupInstance';
+}
+export function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedColorType(values.dColorType.ref.value))
+        return;
+    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
+    if (!webgl.namedTextures[ColorSmoothingRgbName]) {
+        webgl.namedTextures[ColorSmoothingRgbName] = webgl.resources.texture('image-uint8', 'rgb', 'ubyte', 'nearest');
+    }
+    var colorData = webgl.namedTextures[ColorSmoothingRgbName];
+    colorData.load(values.tColor.ref.value);
+    var smoothingData = calcTextureMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionTexture: values.tPosition.ref.value,
+        groupTexture: values.tGroup.ref.value,
+        colorData: colorData,
+        colorType: values.dColorType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+    }, resolution, stride, webgl, colorTexture);
+    ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
+    ValueCell.update(values.tColorGrid, smoothingData.texture);
+    ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
+    ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
+    ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
+}
+function isSupportedOverpaintType(x) {
+    return x === 'groupInstance';
+}
+export function applyTextureMeshOverpaintSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedOverpaintType(values.dOverpaintType.ref.value))
+        return;
+    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
+    if (!webgl.namedTextures[ColorSmoothingRgbaName]) {
+        webgl.namedTextures[ColorSmoothingRgbaName] = webgl.resources.texture('image-uint8', 'rgba', 'ubyte', 'nearest');
+    }
+    var colorData = webgl.namedTextures[ColorSmoothingRgbaName];
+    colorData.load(values.tOverpaint.ref.value);
+    var smoothingData = calcTextureMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionTexture: values.tPosition.ref.value,
+        groupTexture: values.tGroup.ref.value,
+        colorData: colorData,
+        colorType: values.dOverpaintType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+    }, resolution, stride, webgl, colorTexture);
+    ValueCell.updateIfChanged(values.dOverpaintType, smoothingData.type);
+    ValueCell.update(values.tOverpaintGrid, smoothingData.texture);
+    ValueCell.update(values.uOverpaintTexDim, smoothingData.gridTexDim);
+    ValueCell.update(values.uOverpaintGridDim, smoothingData.gridDim);
+    ValueCell.update(values.uOverpaintGridTransform, smoothingData.gridTransform);
+}
+function isSupportedTransparencyType(x) {
+    return x === 'groupInstance';
+}
+export function applyTextureMeshTransparencySmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedTransparencyType(values.dTransparencyType.ref.value))
+        return;
+    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
+    if (!webgl.namedTextures[ColorSmoothingAlphaName]) {
+        webgl.namedTextures[ColorSmoothingAlphaName] = webgl.resources.texture('image-uint8', 'alpha', 'ubyte', 'nearest');
+    }
+    var colorData = webgl.namedTextures[ColorSmoothingAlphaName];
+    colorData.load(values.tTransparency.ref.value);
+    var smoothingData = calcTextureMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionTexture: values.tPosition.ref.value,
+        groupTexture: values.tGroup.ref.value,
+        colorData: colorData,
+        colorType: values.dTransparencyType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+    }, resolution, stride, webgl, colorTexture);
+    ValueCell.updateIfChanged(values.dTransparencyType, smoothingData.type);
+    ValueCell.update(values.tTransparencyGrid, smoothingData.texture);
+    ValueCell.update(values.uTransparencyTexDim, smoothingData.gridTexDim);
+    ValueCell.update(values.uTransparencyGridDim, smoothingData.gridDim);
+    ValueCell.update(values.uTransparencyGridTransform, smoothingData.gridTransform);
+}
 //# sourceMappingURL=color-smoothing.js.map

package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js.map

@@ -1 +1 @@
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package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts

@@ -21,7 +21,9 @@ export interface TextureMesh {
     readonly normalTexture: ValueCell<Texture>;
     readonly doubleBuffer: TextureMesh.DoubleBuffer;
     readonly boundingSphere: Sphere3D;
-    meta?: unknown;
+    readonly meta: {
+        [k: string]: unknown;
+    };
 }
 export declare namespace TextureMesh {
     class DoubleBuffer {
@@ -44,7 +46,7 @@ export declare namespace TextureMesh {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<TextureMesh, Params>;

package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js

@@ -72,6 +72,7 @@ export var TextureMesh;
                 normalTexture: ValueCell.create(normalTexture),
                 doubleBuffer: new DoubleBuffer(),
                 boundingSphere: Sphere3D.clone(boundingSphere),
+                meta: {}
             };
         }
     }
@@ -107,7 +108,7 @@ export var TextureMesh;
         var counts = { drawCount: textureMesh.vertexCount, vertexCount: textureMesh.vertexCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = Sphere3D.clone(textureMesh.boundingSphere);
         var boundingSphere = calculateTransformBoundingSphere(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), clipping), transform), BaseGeometry.createValues(props, counts)), { dDoubleSided: ValueCell.create(props.doubleSided), dFlatShaded: ValueCell.create(props.flatShaded), dFlipSided: ValueCell.create(props.flipSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded), dGeoTexture: ValueCell.create(true) });
+        return __assign(__assign(__assign(__assign(__assign(__assign(__assign(__assign({ uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: ValueCell.create(boundingSphere), invariantBoundingSphere: ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: ValueCell.create(Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), clipping), transform), BaseGeometry.createValues(props, counts)), { dDoubleSided: ValueCell.create(props.doubleSided), dFlatShaded: ValueCell.create(props.flatShaded), dFlipSided: ValueCell.create(props.flipSided), dIgnoreLight: ValueCell.create(props.ignoreLight), dXrayShaded: ValueCell.create(props.xrayShaded), dGeoTexture: ValueCell.create(true), meta: ValueCell.create(textureMesh.meta) });
     }
     function createValuesSimple(textureMesh, props, colorValue, sizeValue, transform) {
         var s = BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map

@@ -1 +1 @@
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+{"version":3,"file":"texture-mesh.js","sourceRoot":"","sources":["../../../../src/mol-geo/geometry/texture-mesh/texture-mesh.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,4BAA4B,CAAC;AACtD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,gBAAgB,EAAE,MAAM,yCAAyC,CAAC;AAE3E,OAAO,EAAE,YAAY,EAAE,MAAM,eAAe,CAAC;AAC7C,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAI/C,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACvC,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AACzD,OAAO,EAAE,uBAAuB,EAAE,MAAM,sBAAsB,CAAC;AAE/D,OAAO,EAAE,gCAAgC,EAAE,MAAM,iCAAiC,CAAC;AACnF,OAAO,EAAE,iBAAiB,EAAW,MAAM,+BAA+B,CAAC;AAC3E,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,kCAAkC,CAAC;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,6BAA6B,CAAC;AAqB3D,MAAM,KAAW,WAAW,CA2J3B;AA3JD,WAAiB,WAAW;IACxB;QAAA;YACY,UAAK,GAAG,CAAC,CAAC;YACV,aAAQ,GAAyE,EAAE,CAAA;QAoB/F,CAAC;QAlBG,0BAAG,GAAH;YACI,OAAO,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACrC,CAAC;QAED,0BAAG,GAAH,UAAI,MAAe,EAAE,KAAc,EAAE,MAAe;YAChD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE;gBACvE,MAAM,QAAA;gBAAE,KAAK,OAAA;gBAAE,MAAM,QAAA;aACxB,CAAC,CAAC;YACH,IAAI,CAAC,KAAK,GAAG,CAAC,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;QACtC,CAAC;QAED,8BAAO,GAAP;YACI,KAAqB,UAAa,EAAb,KAAA,IAAI,CAAC,QAAQ,EAAb,cAAa,EAAb,IAAa,EAAE;gBAA/B,IAAM,MAAM,SAAA;gBACb,MAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACzB,MAAO,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC;gBACxB,MAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC5B;QACL,CAAC;QACL,mBAAC;IAAD,CAAC,AAtBD,IAsBC;IAtBY,wBAAY,eAsBxB,CAAA;IAED,SAAgB,MAAM,CAAC,WAAmB,EAAE,UAAkB,EAAE,aAAsB,EAAE,YAAqB,EAAE,aAAsB,EAAE,cAAwB,EAAE,WAAyB;QACtL,IAAM,KAAK,GAAG,aAAa,CAAC,QAAQ,EAAE,CAAC;QACvC,IAAM,MAAM,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC;QACzC,IAAI,WAAW,EAAE;YACb,WAAW,CAAC,WAAW,GAAG,WAAW,CAAC;YACtC,WAAW,CAAC,UAAU,GAAG,UAAU,CAAC;YACpC,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,aAAa,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,aAAa,CAAC,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC;YAC1G,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;YAC3D,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC;YACzD,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;YAC3D,WAAW,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,EAAE,YAAY,EAAE,aAAa,CAAC,CAAC;YACzE,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,cAAc,EAAE,cAAc,CAAC,CAAC;YAC1D,OAAO,WAAW,CAAC;SACtB;aAAM;YACH,OAAO;gBACH,IAAI,EAAE,cAAc;gBACpB,WAAW,aAAA;gBACX,UAAU,YAAA;gBACV,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBAC3D,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC;gBAC9C,YAAY,EAAE,SAAS,CAAC,MAAM,CAAC,YAAY,CAAC;gBAC5C,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC;gBAC9C,YAAY,EAAE,IAAI,YAAY,EAAE;gBAChC,cAAc,EAAE,QAAQ,CAAC,KAAK,CAAC,cAAc,CAAC;gBAC9C,IAAI,EAAE,EAAE;aACX,CAAC;SACL;IACL,CAAC;IA3Be,kBAAM,SA2BrB,CAAA;IAED,SAAgB,WAAW,CAAC,WAAyB;QACjD,IAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,iBAAiB,EAAE,CAAC;QACnF,IAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,iBAAiB,EAAE,CAAC;QAClF,IAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,iBAAiB,EAAE,CAAC;QACnF,IAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,cAAc,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC;QACjE,OAAO,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,WAAW,CAAC,CAAC;IACrD,CAAC;IANe,uBAAW,cAM1B,CAAA;IAEY,kBAAM,yBACZ,YAAY,CAAC,MAAM,KACtB,WAAW,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,sBAAsB,CAAC,EACnE,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,eAAe,CAAC,EAC1D,UAAU,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,eAAe,CAAC,EAC3D,WAAW,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,eAAe,CAAC,EAC5D,UAAU,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,YAAY,CAAC,eAAe,CAAC,GAC9D,CAAC;IAGW,iBAAK,GAAuC;QACrD,MAAM,oBAAA;QACN,WAAW,aAAA;QACX,YAAY,cAAA;QACZ,kBAAkB,oBAAA;QAClB,YAAY,cAAA;QACZ,oBAAoB,sBAAA;QACpB,qBAAqB,EAAE,YAAY,CAAC,qBAAqB;QACzD,qBAAqB,EAAE,YAAY,CAAC,qBAAqB;QACzD,sBAAsB,EAAE,cAAM,OAAA,gBAAgB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC,EAA7C,CAA6C;KAC9E,CAAC;IAEF,SAAS,YAAY,CAAC,WAAwB,EAAE,SAAwB,EAAE,UAA4B,EAAE,KAAY,EAAE,KAAwB;QAClI,IAAA,aAAa,GAAiB,UAAU,cAA3B,EAAE,UAAU,GAAK,UAAU,WAAf,CAAgB;QACjD,IAAM,UAAU,GAAG,YAAA,KAAK,CAAC,sBAAsB,CAAC,WAAW,EAAE,SAAS,CAAC,CAAC;QAExE,IAAM,KAAK,GAAG,YAAY,CAAC,UAAU,EAAE,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC;QAChE,IAAM,MAAM,GAAG,aAAa,CAAC,aAAa,GAAG,UAAU,CAAC,CAAC;QACzD,IAAM,SAAS,GAAG,oBAAoB,EAAE,CAAC;QACzC,IAAM,YAAY,GAAG,uBAAuB,EAAE,CAAC;QAC/C,IAAM,QAAQ,GAAG,mBAAmB,EAAE,CAAC;QAEvC,IAAM,MAAM,GAAG,EAAE,SAAS,EAAE,WAAW,CAAC,WAAW,EAAE,WAAW,EAAE,WAAW,CAAC,WAAW,EAAE,UAAU,YAAA,EAAE,aAAa,eAAA,EAAE,CAAC;QAEvH,IAAM,uBAAuB,GAAG,QAAQ,CAAC,KAAK,CAAC,WAAW,CAAC,cAAc,CAAC,CAAC;QAC3E,IAAM,cAAc,GAAG,gCAAgC,CAAC,uBAAuB,EAAE,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,EAAE,aAAa,CAAC,CAAC;QAEhI,iFACI,UAAU,EAAE,WAAW,CAAC,aAAa,EACrC,SAAS,EAAE,WAAW,CAAC,aAAa,EACpC,MAAM,EAAE,WAAW,CAAC,YAAY,EAChC,OAAO,EAAE,WAAW,CAAC,aAAa,EAElC,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,cAAc,CAAC,EAChD,uBAAuB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package/lib/mol-geo/geometry/transparency-data.d.ts

@@ -1,16 +1,21 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { ValueCell } from '../../mol-util/value-cell';
-import { Vec2 } from '../../mol-math/linear-algebra';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
 import { TextureImage } from '../../mol-gl/renderable/util';
+import { Texture } from '../../mol-gl/webgl/texture';
 export declare type TransparencyData = {
     tTransparency: ValueCell<TextureImage<Uint8Array>>;
     uTransparencyTexDim: ValueCell<Vec2>;
     dTransparency: ValueCell<boolean>;
     transparencyAverage: ValueCell<number>;
+    tTransparencyGrid: ValueCell<Texture>;
+    uTransparencyGridDim: ValueCell<Vec3>;
+    uTransparencyGridTransform: ValueCell<Vec4>;
+    dTransparencyType: ValueCell<string>;
 };
 export declare function applyTransparencyValue(array: Uint8Array, start: number, end: number, value: number): boolean;
 export declare function getTransparencyAverage(array: Uint8Array, count: number): number;

package/lib/mol-geo/geometry/transparency-data.js

@@ -1,11 +1,12 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { ValueCell } from '../../mol-util/value-cell';
-import { Vec2 } from '../../mol-math/linear-algebra';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
 import { createTextureImage } from '../../mol-gl/renderable/util';
+import { createNullTexture } from '../../mol-gl/webgl/texture';
 export function applyTransparencyValue(array, start, end, value) {
     for (var i = start; i < end; ++i) {
         array[i] = value * 255;
@@ -37,6 +38,10 @@ export function createTransparency(count, transparencyData) {
             uTransparencyTexDim: ValueCell.create(Vec2.create(transparency.width, transparency.height)),
             dTransparency: ValueCell.create(count > 0),
             transparencyAverage: ValueCell.create(0),
+            tTransparencyGrid: ValueCell.create(createNullTexture()),
+            uTransparencyGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
+            uTransparencyGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
+            dTransparencyType: ValueCell.create('groupInstance'),
         };
     }
 }
@@ -53,6 +58,10 @@ export function createEmptyTransparency(transparencyData) {
             uTransparencyTexDim: ValueCell.create(Vec2.create(1, 1)),
             dTransparency: ValueCell.create(false),
             transparencyAverage: ValueCell.create(0),
+            tTransparencyGrid: ValueCell.create(createNullTexture()),
+            uTransparencyGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
+            uTransparencyGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
+            dTransparencyType: ValueCell.create('groupInstance'),
         };
     }
 }

package/lib/mol-geo/geometry/transparency-data.js.map

@@ -1 +1 @@
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+{"version":3,"file":"transparency-data.js","sourceRoot":"","sources":["../../../src/mol-geo/geometry/transparency-data.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,2BAA2B,CAAC;AACtD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAgB,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAChF,OAAO,EAAE,iBAAiB,EAAW,MAAM,4BAA4B,CAAC;AAcxE,MAAM,UAAU,sBAAsB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,KAAa;IAC/F,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,sBAAsB,CAAC,KAAiB,EAAE,KAAa;IACnE,IAAI,GAAG,GAAG,CAAC,CAAC;IACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,EAAE,CAAC,EAAE;QAC5B,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC;KACnB;IACD,OAAO,GAAG,GAAG,CAAC,GAAG,GAAG,KAAK,CAAC,CAAC;AAC/B,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IAC3E,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,CAAC,CAAC;AAC9B,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,KAAa,EAAE,gBAAmC;IACjF,IAAM,YAAY,GAAG,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,gBAAgB,IAAI,gBAAgB,CAAC,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAC/I,IAAI,gBAAgB,EAAE;QAClB,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,aAAa,EAAE,YAAY,CAAC,CAAC;QAC/D,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,mBAAmB,EAAE,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC;QAC7G,SAAS,CAAC,eAAe,CAAC,gBAAgB,CAAC,aAAa,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QACrE,SAAS,CAAC,eAAe,CAAC,gBAAgB,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,YAAY,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC;QACnH,OAAO,gBAAgB,CAAC;KAC3B;SAAM;QACH,OAAO;YACH,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,YAAY,CAAC;YAC7C,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;YAC3F,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;YAC1C,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;YAExC,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,iBAAiB,EAAE,CAAC;YACxD,oBAAoB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAC5D,0BAA0B,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACrE,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACvD,CAAC;KACL;AACL,CAAC;AAED,IAAM,wBAAwB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AACnF,MAAM,UAAU,uBAAuB,CAAC,gBAAmC;IACvE,IAAI,gBAAgB,EAAE;QAClB,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,aAAa,EAAE,wBAAwB,CAAC,CAAC;QAC3E,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,mBAAmB,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QAC1E,OAAO,gBAAgB,CAAC;KAC3B;SAAM;QACH,OAAO;YACH,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,wBAAwB,CAAC;YACzD,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACxD,aAAa,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC;YACtC,mBAAmB,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;YAExC,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,iBAAiB,EAAE,CAAC;YACxD,oBAAoB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAC5D,0BAA0B,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACrE,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACvD,CAAC;KACL;AACL,CAAC"}

package/lib/mol-geo/primitive/polyhedron.js

@@ -83,7 +83,7 @@ function createBuilder() {
     var indices = [];
     var vertexMap = new Map();
     function addVertex(v) {
-        var key = v[0].toFixed(5) + "|" + v[1].toFixed(5) + "|" + v[2].toFixed(5);
+        var key = "".concat(v[0].toFixed(5), "|").concat(v[1].toFixed(5), "|").concat(v[2].toFixed(5));
         var idx = vertexMap.get(key);
         if (idx === undefined) {
             idx = vertices.length / 3;

package/lib/mol-geo/primitive/polyhedron.js.map

@@ -1 +1 @@
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package/lib/mol-gl/_spec/gl.shim.js

@@ -549,7 +549,7 @@ export function createGl(width, height, contextAttributes) {
             switch (pname) {
                 case gl.SHADER_TYPE: return items[shader].type;
                 case gl.COMPILE_STATUS: return true;
-                default: throw new Error("getShaderParameter " + pname);
+                default: throw new Error("getShaderParameter ".concat(pname));
             }
         }, shaderSource: function () { }, compileShader: function () { }, createProgram: function () {
             var id = getNextId();
@@ -569,7 +569,7 @@ export function createGl(width, height, contextAttributes) {
                 case gl.DELETE_STATUS: return false;
                 case gl.VALIDATE_STATUS: return true;
                 case gl.ATTACHED_SHADERS: return 2;
-                default: throw new Error("getProgramParameter " + pname);
+                default: throw new Error("getProgramParameter ".concat(pname));
             }
         }, deleteShader: function () { }, deleteProgram: function () { }, viewport: function (x, y, width, height) {
             viewport.x = x;
@@ -595,13 +595,13 @@ export function createGl(width, height, contextAttributes) {
             return {
                 size: 1,
                 type: gl.INT_VEC3,
-                name: "__activeUniform" + index,
+                name: "__activeUniform".concat(index),
             };
         }, getActiveAttrib: function (program, index) {
             return {
                 size: 1,
                 type: gl.FLOAT,
-                name: "__activeAttrib" + index
+                name: "__activeAttrib".concat(index)
             };
         }, clear: function () { }, uniform1f: function () { }, uniform1fv: function () { }, uniform1i: function () { }, uniform1iv: function () { }, uniform2f: function () { }, uniform2fv: function () { }, uniform2i: function () { }, uniform2iv: function () { }, uniform3f: function () { }, uniform3fv: function () { }, uniform3i: function () { }, uniform3iv: function () { }, uniform4f: function () { }, uniform4fv: function () { }, uniform4i: function () { }, uniform4iv: function () { }, uniformMatrix2fv: function () { }, uniformMatrix3fv: function () { }, uniformMatrix4fv: function () { }, getAttribLocation: function () { return 1; }, vertexAttribPointer: function () { }, enableVertexAttribArray: function () { }, disableVertexAttribArray: function () { }, drawElements: function () { }, drawArrays: function () { }, depthMask: function () { }, depthRange: function (zNear, zFar) {
             depthRange.zNear = zNear;