npm - molstar - Versions diffs - 2.3.7 → 2.4.1 - Mend

molstar 2.3.7 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1699) hide show

package/lib/mol-plugin-ui/controls.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-ui/plugin.js CHANGED Viewed

@@ -16,7 +16,7 @@ var Plugin = /** @class */ (function (_super) {
         return _super !== null && _super.apply(this, arguments) || this;
     }
     Plugin.prototype.region = function (kind, element) {
-        return _jsx("div", __assign({ className: "msp-layout-region msp-layout-" + kind }, { children: _jsx("div", __assign({ className: 'msp-layout-static' }, { children: element }), void 0) }), void 0);
+        return _jsx("div", __assign({ className: "msp-layout-region msp-layout-".concat(kind) }, { children: _jsx("div", __assign({ className: 'msp-layout-static' }, { children: element }), void 0) }), void 0);
     };
     Plugin.prototype.render = function () {
         return _jsx(PluginReactContext.Provider, __assign({ value: this.props.plugin }, { children: _jsx(Layout, {}, void 0) }), void 0);
@@ -71,7 +71,7 @@ var Layout = /** @class */ (function (_super) {
         this.subscribe(this.plugin.layout.events.updated, function () { return _this.forceUpdate(); });
     };
     Layout.prototype.region = function (kind, Element) {
-        return _jsx("div", __assign({ className: "msp-layout-region msp-layout-" + kind }, { children: _jsx("div", __assign({ className: 'msp-layout-static' }, { children: Element ? _jsx(Element, {}, void 0) : null }), void 0) }), void 0);
+        return _jsx("div", __assign({ className: "msp-layout-region msp-layout-".concat(kind) }, { children: _jsx("div", __assign({ className: 'msp-layout-static' }, { children: Element ? _jsx(Element, {}, void 0) : null }), void 0) }), void 0);
     };
     Object.defineProperty(Layout.prototype, "layoutVisibilityClassName", {
         get: function () {
@@ -107,7 +107,7 @@ var Layout = /** @class */ (function (_super) {
                 classList.push('msp-layout-expanded');
             }
             else {
-                classList.push('msp-layout-standard', "msp-layout-standard-" + layout.controlsDisplay);
+                classList.push('msp-layout-standard', "msp-layout-standard-".concat(layout.controlsDisplay));
             }
             return classList.join(' ');
         },

package/lib/mol-plugin-ui/plugin.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-plugin-ui/sequence/chain.js CHANGED Viewed

@@ -31,12 +31,12 @@ var ChainSequenceWrapper = /** @class */ (function (_super) {
             lociElements.push({ unit: unit, indices: indices });
         }
         if (residueCount > 0)
-            counts.push(residueCount + " residues");
-        counts.push(elementCount + " elements");
+            counts.push("".concat(residueCount, " residues"));
+        counts.push("".concat(elementCount, " elements"));
         var length = 1;
         var markerArray = new Uint8Array(length);
         _this = _super.call(this, data, markerArray, length) || this;
-        _this.label = "Whole Chain (" + counts.join(', ') + ")";
+        _this.label = "Whole Chain (".concat(counts.join(', '), ")");
         _this.unitIndices = unitIndices;
         _this.loci = StructureElement.Loci(_this.data.structure, lociElements);
         return _this;

package/lib/mol-plugin-ui/sequence/chain.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-plugin-ui/sequence/polymer.d.ts CHANGED Viewed

@@ -17,7 +17,7 @@ export declare class PolymerSequenceWrapper extends SequenceWrapper<StructureUni
     private seqId;
     residueLabel(seqIdx: number): string;
     residueColor(seqIdx: number): import("../../mol-util/color").Color;
-    residueClass(seqIdx: number): "msp-sequence-present" | "msp-sequence-missing";
+    residueClass(seqIdx: number): "msp-sequence-missing" | "msp-sequence-present";
     mark(loci: Loci, action: MarkerAction): boolean;
     getLoci(seqIdx: number): StructureElement.Loci;
     constructor(data: StructureUnit);

package/lib/mol-plugin-ui/sequence/sequence.js CHANGED Viewed

@@ -188,7 +188,7 @@ var Sequence = /** @class */ (function (_super) {
             : this.props.sequenceWrapper.residueClass(seqIdx);
     };
     Sequence.prototype.residue = function (seqIdx, label, marker) {
-        return _jsx("span", __assign({ "data-seqid": seqIdx, style: { backgroundColor: this.getBackgroundColor(marker) }, className: this.getResidueClass(seqIdx, label) }, { children: "\u200B" + label + "\u200B" }), seqIdx);
+        return _jsx("span", __assign({ "data-seqid": seqIdx, style: { backgroundColor: this.getBackgroundColor(marker) }, className: this.getResidueClass(seqIdx, label) }, { children: "\u200B".concat(label, "\u200B") }), seqIdx);
     };
     Sequence.prototype.getSequenceNumberClass = function (seqIdx, seqNum, label) {
         var classList = ['msp-sequence-number'];
@@ -212,10 +212,10 @@ var Sequence = /** @class */ (function (_super) {
             if (Unit.isAtomic(l.unit)) {
                 var seqId = StructureProperties.residue.auth_seq_id(l);
                 var insCode = StructureProperties.residue.pdbx_PDB_ins_code(l);
-                seqNum = "" + seqId + (insCode ? insCode : '');
+                seqNum = "".concat(seqId).concat(insCode ? insCode : '');
             }
             else if (Unit.isCoarse(l.unit)) {
-                seqNum = "" + (seqIdx + 1);
+                seqNum = "".concat(seqIdx + 1);
             }
         }
         return seqNum;
@@ -227,7 +227,7 @@ var Sequence = /** @class */ (function (_super) {
     };
     Sequence.prototype.getSequenceNumberSpan = function (seqIdx, label) {
         var seqNum = this.getSequenceNumber(seqIdx);
-        return _jsx("span", __assign({ className: this.getSequenceNumberClass(seqIdx, seqNum, label) }, { children: this.padSeqNum(seqNum) }), "marker-" + seqIdx);
+        return _jsx("span", __assign({ className: this.getSequenceNumberClass(seqIdx, seqNum, label) }, { children: this.padSeqNum(seqNum) }), "marker-".concat(seqIdx));
     };
     Sequence.prototype.updateMarker = function () {
         if (!this.parentDiv.current)

package/lib/mol-plugin-ui/sequence/sequence.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-ui/sequence.js CHANGED Viewed

@@ -31,7 +31,7 @@ function opKey(l) {
     var ncs = SP.unit.struct_ncs_oper_id(l);
     var hkl = SP.unit.hkl(l);
     var spgrOp = SP.unit.spgrOp(l);
-    return ids.sort().join(',') + "|" + ncs + "|" + hkl + "|" + spgrOp;
+    return "".concat(ids.sort().join(','), "|").concat(ncs, "|").concat(hkl, "|").concat(spgrOp);
 }
 function splitModelEntityId(modelEntityId) {
     var _a = modelEntityId.split('|'), modelIdx = _a[0], entityId = _a[1];
@@ -106,7 +106,7 @@ function getModelEntityOptions(structure, polymersOnly) {
         StructureElement.Location.set(l, structure, unit, unit.elements[0]);
         var id = SP.entity.id(l);
         var modelIdx = structure.getModelIndex(unit.model);
-        var key = modelIdx + "|" + id;
+        var key = "".concat(modelIdx, "|").concat(id);
         if (seen.has(key))
             continue;
         if (polymersOnly && SP.entity.type(l) !== 'polymer')
@@ -114,13 +114,13 @@ function getModelEntityOptions(structure, polymersOnly) {
         var description = SP.entity.pdbx_description(l).join(', ');
         if (structure.models.length) {
             if (structure.representativeModel) { // indicates model trajectory
-                description += " (Model " + structure.models[modelIdx].modelNum + ")";
+                description += " (Model ".concat(structure.models[modelIdx].modelNum, ")");
             }
             else if (description.startsWith('Polymer ')) { // indicates generic entity name
-                description += " (" + structure.models[modelIdx].entry + ")";
+                description += " (".concat(structure.models[modelIdx].entry, ")");
             }
         }
-        var label = id + ": " + description;
+        var label = "".concat(id, ": ").concat(description);
         options.push([key, label]);
         seen.add(key);
         if (options.length > MaxSelectOptionsCount) {
@@ -283,7 +283,7 @@ var SequenceView = /** @class */ (function (_super) {
     SequenceView.prototype.getSequenceWrapper = function (params) {
         return {
             wrapper: getSequenceWrapper(this.state, this.plugin.managers.structure.selection),
-            label: PD.optionLabel(params.chain, this.state.chainGroupId) + " | " + PD.optionLabel(params.entity, this.state.modelEntityId)
+            label: "".concat(PD.optionLabel(params.chain, this.state.chainGroupId), " | ").concat(PD.optionLabel(params.entity, this.state.modelEntityId))
         };
     };
     SequenceView.prototype.getSequenceWrappers = function (params) {
@@ -304,7 +304,7 @@ var SequenceView = /** @class */ (function (_super) {
                             chainGroupId: chainGroupId,
                             operatorKey: operatorKey
                         }, this.plugin.managers.structure.selection),
-                        label: cLabel + " | " + eLabel
+                        label: "".concat(cLabel, " | ").concat(eLabel)
                     });
                     if (wrappers.length > MaxSequenceWrappersCount)
                         return [];
@@ -365,7 +365,7 @@ var SequenceView = /** @class */ (function (_super) {
         var params = this.params;
         var values = this.values;
         var sequenceWrappers = this.getSequenceWrappers(params);
-        return _jsxs("div", __assign({ className: 'msp-sequence' }, { children: [_jsxs("div", __assign({ className: 'msp-sequence-select' }, { children: [_jsx(Icon, { svg: HelpOutlineSvg, style: { cursor: 'help', position: 'absolute', right: 0, top: 0 }, title: 'This shows a single sequence. Use the controls to show a different sequence.' }, void 0), _jsx("span", { children: "Sequence of" }, void 0), _jsx(PureSelectControl, { title: "[Structure] " + PD.optionLabel(params.structure, values.structure), param: params.structure, name: 'structure', value: values.structure, onChange: this.setParamProps }, void 0), _jsx(PureSelectControl, { title: "[Mode]", param: SequenceViewModeParam, name: 'mode', value: values.mode, onChange: this.setParamProps }, void 0), values.mode === 'single' && _jsx(PureSelectControl, { title: "[Entity] " + PD.optionLabel(params.entity, values.entity), param: params.entity, name: 'entity', value: values.entity, onChange: this.setParamProps }, void 0), values.mode === 'single' && _jsx(PureSelectControl, { title: "[Chain] " + PD.optionLabel(params.chain, values.chain), param: params.chain, name: 'chain', value: values.chain, onChange: this.setParamProps }, void 0), params.operator.options.length > 1 && _jsx(_Fragment, { children: _jsx(PureSelectControl, { title: "[Instance] " + PD.optionLabel(params.operator, values.operator), param: params.operator, name: 'operator', value: values.operator, onChange: this.setParamProps }, void 0) }, void 0)] }), void 0), _jsx(NonEmptySequenceWrapper, { children: sequenceWrappers.map(function (s, i) {
+        return _jsxs("div", __assign({ className: 'msp-sequence' }, { children: [_jsxs("div", __assign({ className: 'msp-sequence-select' }, { children: [_jsx(Icon, { svg: HelpOutlineSvg, style: { cursor: 'help', position: 'absolute', right: 0, top: 0 }, title: 'This shows a single sequence. Use the controls to show a different sequence.' }, void 0), _jsx("span", { children: "Sequence of" }, void 0), _jsx(PureSelectControl, { title: "[Structure] ".concat(PD.optionLabel(params.structure, values.structure)), param: params.structure, name: 'structure', value: values.structure, onChange: this.setParamProps }, void 0), _jsx(PureSelectControl, { title: "[Mode]", param: SequenceViewModeParam, name: 'mode', value: values.mode, onChange: this.setParamProps }, void 0), values.mode === 'single' && _jsx(PureSelectControl, { title: "[Entity] ".concat(PD.optionLabel(params.entity, values.entity)), param: params.entity, name: 'entity', value: values.entity, onChange: this.setParamProps }, void 0), values.mode === 'single' && _jsx(PureSelectControl, { title: "[Chain] ".concat(PD.optionLabel(params.chain, values.chain)), param: params.chain, name: 'chain', value: values.chain, onChange: this.setParamProps }, void 0), params.operator.options.length > 1 && _jsx(_Fragment, { children: _jsx(PureSelectControl, { title: "[Instance] ".concat(PD.optionLabel(params.operator, values.operator)), param: params.operator, name: 'operator', value: values.operator, onChange: this.setParamProps }, void 0) }, void 0)] }), void 0), _jsx(NonEmptySequenceWrapper, { children: sequenceWrappers.map(function (s, i) {
                         var elem = typeof s.wrapper === 'string'
                             ? _jsx("div", __assign({ className: 'msp-sequence-wrapper' }, { children: s.wrapper }), i)
                             : _jsx(Sequence, { sequenceWrapper: s.wrapper }, i);

package/lib/mol-plugin-ui/sequence.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-plugin-ui/skin/base/components/controls.scss CHANGED Viewed

@@ -1,3 +1,5 @@
+@use "sass:math";
 .msp-control-row {
     position: relative;
     height: $row-height;
@@ -184,7 +186,7 @@
         z-index: 100000;
         background: $default-background;
         border-top: 1px solid $default-background;
-        padding-bottom: $control-spacing / 2;
+        padding-bottom: math.div($control-spacing, 2);
         width: 100%;
         // input[type=text] {
@@ -195,8 +197,8 @@
 .msp-toggle-color-picker-above {
     .msp-color-picker {
-        top: -2 * 32px - 16px - $control-spacing / 2;
-        height: 2 * 32px + 16px + $control-spacing / 2;
+        top: -2 * 32px - 16px - math.div($control-spacing, 2);
+        height: 2 * 32px + 16px + math.div($control-spacing, 2);
     }
 }
@@ -208,10 +210,6 @@
 }
 .msp-control-offset {
-    // border-left-width: $control-spacing / 2;
-    // border-left-style: solid;
-    // border-left-color: color-increase-contrast($default-background, 10%);
-    // padding-left: 1px;
     padding-left: $control-spacing;
 }
@@ -228,7 +226,7 @@
 // }
 .msp-control-group-wrapper {
-    //border-left-width: $control-spacing / 2;
+    //border-left-width: math.div($control-spacing, 2);
     //border-left-style: solid;
     //border-left-color: color-increase-contrast($default-background, 10%);
@@ -240,10 +238,10 @@
 .msp-control-group-header {
     background: $default-background;
     > button, div {
-        padding-left: 4px; // $control-spacing / 2 !important;
+        padding-left: 4px; // math.div($control-spacing, 2) !important;
         text-align: left;
-        height: 24px !important; // 2 * $row-height / 3 !important;
-        line-height: 24px !important; // 2 * $row-height / 3 !important;
+        height: 24px !important;
+        line-height: 24px !important;
         font-size: 85% !important;
         background: $default-background !important;
         color: color-lower-contrast($font-color, 15%);
@@ -253,8 +251,8 @@
         line-height: 24px !important;
     }
     > span {
-        padding-left: $control-spacing / 2;
-        line-height: 2 * $row-height / 3;
+        padding-left: math.div($control-spacing, 2);
+        line-height: math.div(2 * $row-height, 3);
         font-size: 70%;
         background: $default-background;
         color: color-lower-contrast($font-color, 15%);
@@ -267,7 +265,7 @@
 .msp-control-group-footer {
     background: color-increase-contrast($default-background, 5%);
-    height: $control-spacing / 2;
+    height: math.div($control-spacing, 2);
     font-size: 1px;
     margin-top: 1px;
 }
@@ -339,7 +337,7 @@
     margin-top: 1px;
     > div {
-        padding: ($control-spacing / 2) $control-spacing;
+        padding: (math.div($control-spacing, 2)) $control-spacing;
         text-align: left;
         color: color-lower-contrast($font-color, 15%);
     }
@@ -359,7 +357,7 @@
         height: $control-spacing * 3;
         > span {
-            padding: $control-spacing / 2;
+            padding: math.div($control-spacing, 2);
             color: white;
             font-weight: bold;
             background-color: rgba(0, 0, 0, 0.2);
@@ -370,7 +368,7 @@
 .msp-table-legend {
     > div {
         // min-width: 60px;
-        margin-right: $control-spacing / 2;
+        margin-right: math.div($control-spacing, 2);
         display: inline-flex;
         .msp-table-legend-color {
@@ -379,7 +377,7 @@
         }
         .msp-table-legend-text {
-            margin: 0 ($control-spacing / 2);
+            margin: 0 (math.div($control-spacing, 2));
         }
     }
 }

package/lib/mol-plugin-ui/skin/base/components/toast.scss CHANGED Viewed

@@ -1,4 +1,6 @@
+@use "sass:math";
 .msp-toast-container {
     position: relative;
     // bottom: $control-spacing;
@@ -75,7 +77,7 @@
                 bottom: 0;
                 width: 100%;
                 text-align: right;
-                padding-right: $control-spacing / 2;
+                padding-right: math.div($control-spacing, 2);
             }
         }
     }

package/lib/mol-plugin-ui/state/actions.js CHANGED Viewed

@@ -40,7 +40,7 @@ var StateObjectActions = /** @class */ (function (_super) {
             return null;
         var def = cell.transform.transformer.definition;
         var display = cell.obj ? cell.obj.label : (def.display && def.display.name) || def.name;
-        return _jsxs("div", __assign({ className: 'msp-state-actions' }, { children: [!this.props.hideHeader && _jsxs("div", __assign({ className: 'msp-section-header' }, { children: [_jsx(Icon, { svg: CodeSvg }, void 0), " ", "Actions (" + display + ")"] }), void 0), actions.map(function (act, i) { return _jsx(ApplyActionControl, { state: state, action: act, nodeRef: ref, initiallyCollapsed: i === 0 ? !_this.props.alwaysExpandFirst && _this.props.initiallyCollapsed : _this.props.initiallyCollapsed }, "" + act.id); })] }), void 0);
+        return _jsxs("div", __assign({ className: 'msp-state-actions' }, { children: [!this.props.hideHeader && _jsxs("div", __assign({ className: 'msp-section-header' }, { children: [_jsx(Icon, { svg: CodeSvg }, void 0), " ", "Actions (".concat(display, ")")] }), void 0), actions.map(function (act, i) { return _jsx(ApplyActionControl, { state: state, action: act, nodeRef: ref, initiallyCollapsed: i === 0 ? !_this.props.alwaysExpandFirst && _this.props.initiallyCollapsed : _this.props.initiallyCollapsed }, "".concat(act.id)); })] }), void 0);
     };
     return StateObjectActions;
 }(PluginUIComponent));

package/lib/mol-plugin-ui/state/actions.js.map CHANGED Viewed

	@@ -1 +1 @@
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