rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
- data/README.md +66 -0
- data/Rakefile +19 -2
- data/bin/neat +4 -60
- data/lib/rubyneat/cli.rb +5 -0
- data/lib/rubyneat/cli/generate.rb +131 -0
- data/lib/rubyneat/cli/main.rb +54 -0
- data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
- data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
- data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
- data/rubyneat.gemspec.orig +384 -0
- metadata +76 -292
- data/.idea/.name +0 -1
- data/.idea/.rakeTasks +0 -7
- data/.idea/dictionaries/trader.xml +0 -3
- data/.idea/encodings.xml +0 -5
- data/.idea/misc.xml +0 -5
- data/.idea/modules.xml +0 -9
- data/.idea/rubyneat.iml +0 -198
- data/.idea/runConfigurations/invpend_neat.xml +0 -26
- data/.idea/runConfigurations/sigdebug_neat.xml +0 -24
- data/.idea/runConfigurations/xor_neat.xml +0 -26
- data/.idea/runConfigurations/xordebug_neat.xml +0 -24
- data/.idea/runConfigurations/xorsin_neat.xml +0 -24
- data/.idea/scopes/scope_settings.xml +0 -5
- data/.idea/vcs.xml +0 -7
- data/.idea/workspace.xml +0 -1151
- data/.yardoc/checksums +0 -11
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Guardfile +0 -8
- data/doc/ControllerPoint.html +0 -125
- data/doc/CuteA.html +0 -286
- data/doc/CuteB.html +0 -297
- data/doc/DSL.html +0 -883
- data/doc/NEAT.html +0 -588
- data/doc/NEAT/BasicNeuronTypes.html +0 -136
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -518
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -366
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -275
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -274
- data/doc/NEAT/Controller.html +0 -2490
- data/doc/NEAT/Controller/NeatSettings.html +0 -3985
- data/doc/NEAT/Critter.html +0 -1037
- data/doc/NEAT/Critter/Genotype.html +0 -1601
- data/doc/NEAT/Critter/Genotype/Gene.html +0 -979
- data/doc/NEAT/Critter/Phenotype.html +0 -603
- data/doc/NEAT/DSL.html +0 -1255
- data/doc/NEAT/Evaluator.html +0 -420
- data/doc/NEAT/Evolver.html +0 -602
- data/doc/NEAT/Evolver/CritterOp.html +0 -551
- data/doc/NEAT/Expressor.html +0 -327
- data/doc/NEAT/Graph.html +0 -402
- data/doc/NEAT/Graph/DependencyResolver.html +0 -478
- data/doc/NEAT/Graph/GraphException.html +0 -123
- data/doc/NEAT/NeatException.html +0 -123
- data/doc/NEAT/NeatOb.html +0 -567
- data/doc/NEAT/Neuron.html +0 -1067
- data/doc/NEAT/Operator.html +0 -162
- data/doc/NEAT/Population.html +0 -1961
- data/doc/NEAT/Trait.html +0 -169
- data/doc/_index.html +0 -373
- data/doc/class_list.html +0 -54
- data/doc/css/common.css +0 -1
- data/doc/css/full_list.css +0 -57
- data/doc/css/style.css +0 -339
- data/doc/file_list.html +0 -53
- data/doc/frames.html +0 -26
- data/doc/index.html +0 -373
- data/doc/js/app.js +0 -219
- data/doc/js/full_list.js +0 -178
- data/doc/js/jquery.js +0 -4
- data/doc/method_list.html +0 -1415
- data/doc/top-level-namespace.html +0 -164
- data/foo/foo_aquarium_example.rb +0 -38
- data/foo/foo_gosu.rb +0 -99
- data/foo/foo_rubygoo.rb +0 -104
- data/foo/foo_sdl.rb +0 -34
- data/foo/icon.png +0 -0
- data/neater/invpend_neat.rb +0 -150
- data/neater/rnlib/inverted_pendulum.rb +0 -380
- data/neater/rnlib/xor.rb +0 -10
- data/neater/sigdebug_neat.rb +0 -136
- data/neater/xoranalog_neat.rb +0 -138
- data/neater/xorsin_neat.rb +0 -143
- data/projectFilesBackup/.idea/rubyneat.iml +0 -180
- data/public/.directory +0 -4
- data/public/background.png +0 -0
- data/public/background.xcf +0 -0
- data/public/cart.png +0 -0
- data/public/cart.xcf +0 -0
- data/public/metalpoles_molton_ball_l.jpg +0 -0
- data/public/old_background.png +0 -0
- data/public/pointer.png +0 -0
- data/public/pointer.xcf +0 -0
- data/public/pole.kra +0 -0
- data/public/pole.png +0 -0
- data/public/pole.xcf +0 -0
- data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
- data/public/wheel.png +0 -0
- data/public/wheel.xcf +0 -0
- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +0 -116
- data/rdoc/CuteA.html +0 -177
- data/rdoc/CuteB.html +0 -178
- data/rdoc/DSLSetup.html +0 -177
- data/rdoc/GameTestWindow.html +0 -242
- data/rdoc/GameWindow.html +0 -292
- data/rdoc/Gemfile.html +0 -215
- data/rdoc/Gemfile_lock.html +0 -327
- data/rdoc/GraphTest.html +0 -210
- data/rdoc/Guardfile.html +0 -198
- data/rdoc/InvertedPendulum.html +0 -198
- data/rdoc/InvertedPendulum/Cart.html +0 -668
- data/rdoc/InvertedPendulum/DSL.html +0 -259
- data/rdoc/InvertedPendulum/InvPendWindow.html +0 -402
- data/rdoc/Logger.html +0 -98
- data/rdoc/NEAT.html +0 -422
- data/rdoc/NEAT/BasicNeuronTypes.html +0 -107
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -265
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -206
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -161
- data/rdoc/NEAT/Controller.html +0 -729
- data/rdoc/NEAT/Controller/NeatSettings.html +0 -880
- data/rdoc/NEAT/Critter.html +0 -489
- data/rdoc/NEAT/Critter/Genotype.html +0 -735
- data/rdoc/NEAT/Critter/Genotype/Gene.html +0 -457
- data/rdoc/NEAT/Critter/Phenotype.html +0 -330
- data/rdoc/NEAT/DSL.html +0 -729
- data/rdoc/NEAT/Evaluator.html +0 -256
- data/rdoc/NEAT/Evolver.html +0 -891
- data/rdoc/NEAT/Evolver/CritterOp.html +0 -349
- data/rdoc/NEAT/Expressor.html +0 -402
- data/rdoc/NEAT/Graph.html +0 -263
- data/rdoc/NEAT/Graph/DependencyResolver.html +0 -291
- data/rdoc/NEAT/Graph/GraphException.html +0 -105
- data/rdoc/NEAT/NeatException.html +0 -105
- data/rdoc/NEAT/NeatOb.html +0 -325
- data/rdoc/NEAT/Neuron.html +0 -481
- data/rdoc/NEAT/Operator.html +0 -109
- data/rdoc/NEAT/Population.html +0 -935
- data/rdoc/NEAT/Trait.html +0 -117
- data/rdoc/Object.html +0 -384
- data/rdoc/Phi.html +0 -98
- data/rdoc/Player.html +0 -383
- data/rdoc/Rakefile.html +0 -254
- data/rdoc/RubyNEAT.html +0 -98
- data/rdoc/RubyNEAT/Application.html +0 -105
- data/rdoc/SDL.html +0 -98
- data/rdoc/SDL/Event2.html +0 -98
- data/rdoc/Vector.html +0 -195
- data/rdoc/created.rid +0 -125
- data/rdoc/doc/ControllerPoint_html.html +0 -299
- data/rdoc/doc/CuteA_html.html +0 -438
- data/rdoc/doc/CuteB_html.html +0 -436
- data/rdoc/doc/DSL_html.html +0 -992
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +0 -617
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +0 -498
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +0 -412
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +0 -310
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +0 -3324
- data/rdoc/doc/NEAT/Controller_html.html +0 -2212
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +0 -997
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +0 -1556
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +0 -687
- data/rdoc/doc/NEAT/Critter_html.html +0 -1037
- data/rdoc/doc/NEAT/DSL_html.html +0 -1349
- data/rdoc/doc/NEAT/Evaluator_html.html +0 -556
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +0 -690
- data/rdoc/doc/NEAT/Evolver_html.html +0 -677
- data/rdoc/doc/NEAT/Expressor_html.html +0 -468
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +0 -598
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +0 -299
- data/rdoc/doc/NEAT/Graph_html.html +0 -527
- data/rdoc/doc/NEAT/NeatException_html.html +0 -299
- data/rdoc/doc/NEAT/NeatOb_html.html +0 -671
- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
- data/rdoc/doc/NEAT/Operator_html.html +0 -337
- data/rdoc/doc/NEAT/Population_html.html +0 -1795
- data/rdoc/doc/NEAT/Trait_html.html +0 -344
- data/rdoc/doc/NEAT_html.html +0 -736
- data/rdoc/doc/_index_html.html +0 -559
- data/rdoc/doc/class_list_html.html +0 -369
- data/rdoc/doc/css/common_css.html +0 -188
- data/rdoc/doc/css/full_list_css.html +0 -243
- data/rdoc/doc/css/style_css.html +0 -530
- data/rdoc/doc/file_list_html.html +0 -240
- data/rdoc/doc/frames_html.html +0 -217
- data/rdoc/doc/index_html.html +0 -559
- data/rdoc/doc/js/app_js.html +0 -423
- data/rdoc/doc/js/full_list_js.html +0 -372
- data/rdoc/doc/js/jquery_js.html +0 -1536
- data/rdoc/doc/method_list_html.html +0 -1375
- data/rdoc/doc/top-level-namespace_html.html +0 -317
- data/rdoc/fonts.css +0 -167
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
- data/rdoc/images/bullet_black.png +0 -0
- data/rdoc/images/bullet_toggle_minus.png +0 -0
- data/rdoc/images/bullet_toggle_plus.png +0 -0
- data/rdoc/images/date.png +0 -0
- data/rdoc/images/delete.png +0 -0
- data/rdoc/images/find.png +0 -0
- data/rdoc/images/loadingAnimation.gif +0 -0
- data/rdoc/images/macFFBgHack.png +0 -0
- data/rdoc/images/package.png +0 -0
- data/rdoc/images/page_green.png +0 -0
- data/rdoc/images/page_white_text.png +0 -0
- data/rdoc/images/page_white_width.png +0 -0
- data/rdoc/images/plugin.png +0 -0
- data/rdoc/images/ruby.png +0 -0
- data/rdoc/images/tag_blue.png +0 -0
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- data/rdoc/images/transparent.png +0 -0
- data/rdoc/images/wrench.png +0 -0
- data/rdoc/images/wrench_orange.png +0 -0
- data/rdoc/images/zoom.png +0 -0
- data/rdoc/index.html +0 -282
- data/rdoc/js/darkfish.js +0 -140
- data/rdoc/js/jquery.js +0 -18
- data/rdoc/js/navigation.js +0 -142
- data/rdoc/js/search.js +0 -109
- data/rdoc/js/search_index.js +0 -1
- data/rdoc/js/searcher.js +0 -228
- data/rdoc/rdoc.css +0 -580
- data/rdoc/rubyneat_gemspec.html +0 -387
- data/rdoc/table_of_contents.html +0 -2502
- data/rdoc/xordebug_log.html +0 -170598
- data/rdoc/xorsin_log.html +0 -22569
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<p><p>The Critter class comprises a Genotype and a Phenotype. The
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<pre><strong class="classes">Classes:</strong> <span class='object_link'><a href="Critter/Genotype.html" title="NEAT::Critter::Genotype (class)">Genotype</a></span>, <span class='object_link'><a href="Critter/Phenotype.html" title="NEAT::Critter::Phenotype (class)">Phenotype</a></span></pre>
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<p><p>Ratings assigned by Evaluator.</p> </div></span></p>
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<p><p>Returns the value of attribute genotype.</p>
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<p><p>Ratings assigned by Evaluator.</p> </div></span></p>
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<p><p>Returns the value of attribute phenotype.</p>
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<p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
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<p><p>Compare ourselves against another critter for
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<p><p>Critter print.</p> </div></span></p>
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<p><p>A single evaluation step.</p> </div></span></p>
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<p><p>Exoress this critter using the Expressor plugin.</p>
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|
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<span class="note title constructor">constructor</span>
|
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|
447
|
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<span class="summary_desc"><div class='inline'></pre>
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449
|
-
<p><p>Critter construction.</p> </div></span></p>
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<p></li></p>
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452
|
-
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453
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<pre> <li class="public ">
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|
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<span class="summary_signature">
|
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455
|
-
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456
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<a href="#initialize_neurons%21-instance_method" title="#initialize_neurons! (instance method)">- (Object) <strong>initialize_neurons!</strong> </a>
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</span>
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|
-
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460
|
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<span class="summary_desc"><div class='inline'></pre>
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462
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<p><p>This initializes neurons in preparation for recurrence.</p>
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</div></span></p>
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|
-
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<p></li></p>
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<pre> <li class="public ">
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|
-
<span class="summary_signature">
|
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469
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-
|
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470
|
-
<a href="#ready_for_expression%21-instance_method" title="#ready_for_expression! (instance method)">- (Object) <strong>ready_for_expression!</strong> </a>
|
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|
-
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|
-
</span>
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-
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|
-
<span class="summary_desc"><div class='inline'></pre>
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|
-
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476
|
-
<p><p>Get the Critter ready for the Expressor to express the
|
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|
-
geneotype.</p> </div></span></p>
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478
|
-
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|
-
<p></li></p>
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|
-
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481
|
-
<pre> </ul>
|
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482
|
-
|
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483
|
-
<h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
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484
|
-
<p class="inherited"><span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
|
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485
|
-
|
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486
|
-
<div id="constructor_details" class="method_details_list">
|
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487
|
-
<h2>Constructor Details</h2>
|
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488
|
-
|
|
489
|
-
<div class="method_details first">
|
|
490
|
-
<h3 class="signature first" id="initialize-instance_method">
|
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491
|
-
|
|
492
|
-
- (<tt><span class='object_link'><a href="" title="NEAT::Critter (class)">Critter</a></span></tt>) <strong>initialize</strong>(pop, mating = false, &amp;block)</pre>
|
|
493
|
-
|
|
494
|
-
<p></h3><div class=“docstring”></p>
|
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|
-
|
|
496
|
-
<pre><div class="discussion"></pre>
|
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497
|
-
|
|
498
|
-
<p><p>Critter construction. We construct the genotype. The phenotype
|
|
499
|
-
will be constructed by the Expressor operator.</p></p>
|
|
500
|
-
|
|
501
|
-
<pre></div></pre>
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|
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503
|
-
<p></div> <div class=“tags”></p>
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|
-
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|
-
<p></div><table class=“source_code”></p>
|
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506
|
-
|
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507
|
-
<pre><tr>
|
|
508
|
-
<td>
|
|
509
|
-
<pre class="lines"></pre>
|
|
510
|
-
|
|
511
|
-
<p>20 21 22 23 24 25</pre></p>
|
|
512
|
-
|
|
513
|
-
<pre></td>
|
|
514
|
-
<td>
|
|
515
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 20</span></pre>
|
|
516
|
-
|
|
517
|
-
<p><span class='kw'>def</span> <span class='id
|
|
518
|
-
identifier rubyid_initialize'>initialize</span><span
|
|
519
|
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class='lparen'>(</span><span class='id identifier
|
|
520
|
-
rubyid_pop'>pop</span><span
|
|
521
|
-
class='comma'>,</span> <span class='id identifier
|
|
522
|
-
rubyid_mating'>mating</span> <span
|
|
523
|
-
class='op'>=</span> <span
|
|
524
|
-
class='kw'>false</span><span
|
|
525
|
-
class='comma'>,</span> <span
|
|
526
|
-
class='op'>&amp;</span><span class='id
|
|
527
|
-
identifier rubyid_block'>block</span><span
|
|
528
|
-
class='rparen'>)</span></p>
|
|
529
|
-
|
|
530
|
-
<pre><span class='kw'>super</span> <span class='id identifier rubyid_pop'>pop</span><span class='period'>.</span><span class='id identifier rubyid_controller'>controller</span>
|
|
531
|
-
<span class='ivar'>@population</span> <span class='op'>=</span> <span class='id identifier rubyid_pop'>pop</span>
|
|
532
|
-
<span class='ivar'>@genotype</span> <span class='op'>=</span> <span class='const'>Genotype</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='comma'>,</span> <span class='id identifier rubyid_mating'>mating</span><span class='rparen'>)</span>
|
|
533
|
-
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span></pre>
|
|
534
|
-
|
|
535
|
-
<p><span class='kw'>end</span></pre></p>
|
|
536
|
-
|
|
537
|
-
<pre> </td>
|
|
538
|
-
</tr></pre>
|
|
539
|
-
|
|
540
|
-
<p></table> </div></p>
|
|
541
|
-
|
|
542
|
-
<p></div></p>
|
|
543
|
-
|
|
544
|
-
<pre><div id="instance_attr_details" class="attr_details">
|
|
545
|
-
<h2>Instance Attribute Details</h2>
|
|
546
|
-
|
|
547
|
-
<span id="fitness=-instance_method"></span>
|
|
548
|
-
<div class="method_details first">
|
|
549
|
-
<h3 class="signature first" id="fitness-instance_method">
|
|
550
|
-
|
|
551
|
-
- (<tt>Object</tt>) <strong>fitness</strong></pre>
|
|
552
|
-
|
|
553
|
-
<p></h3><div class=“docstring”></p>
|
|
554
|
-
|
|
555
|
-
<pre><div class="discussion"></pre>
|
|
556
|
-
|
|
557
|
-
<p><p>Ratings assigned by Evaluator</p></p>
|
|
558
|
-
|
|
559
|
-
<pre></div></pre>
|
|
560
|
-
|
|
561
|
-
<p></div> <div class=“tags”></p>
|
|
562
|
-
|
|
563
|
-
<p></div><table class=“source_code”></p>
|
|
564
|
-
|
|
565
|
-
<pre><tr>
|
|
566
|
-
<td>
|
|
567
|
-
<pre class="lines"></pre>
|
|
568
|
-
|
|
569
|
-
<p>16 17 18</pre></p>
|
|
570
|
-
|
|
571
|
-
<pre></td>
|
|
572
|
-
<td>
|
|
573
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span></pre>
|
|
574
|
-
|
|
575
|
-
<p><span class='kw'>def</span> <span class='id
|
|
576
|
-
identifier rubyid_fitness'>fitness</span></p>
|
|
577
|
-
|
|
578
|
-
<pre><span class='ivar'>@fitness</span></pre>
|
|
579
|
-
|
|
580
|
-
<p><span class='kw'>end</span></pre></p>
|
|
581
|
-
|
|
582
|
-
<pre> </td>
|
|
583
|
-
</tr></pre>
|
|
584
|
-
|
|
585
|
-
<p></table> </div></p>
|
|
586
|
-
|
|
587
|
-
<pre> <span id="genotype=-instance_method"></span>
|
|
588
|
-
<div class="method_details ">
|
|
589
|
-
<h3 class="signature " id="genotype-instance_method">
|
|
590
|
-
|
|
591
|
-
- (<tt>Object</tt>) <strong>genotype</strong></pre>
|
|
592
|
-
|
|
593
|
-
<p></h3><div class=“docstring”></p>
|
|
594
|
-
|
|
595
|
-
<pre><div class="discussion"></pre>
|
|
596
|
-
|
|
597
|
-
<p><p>Returns the value of attribute genotype</p></p>
|
|
598
|
-
|
|
599
|
-
<pre></div></pre>
|
|
600
|
-
|
|
601
|
-
<p></div> <div class=“tags”></p>
|
|
602
|
-
|
|
603
|
-
<p></div><table class=“source_code”></p>
|
|
604
|
-
|
|
605
|
-
<pre><tr>
|
|
606
|
-
<td>
|
|
607
|
-
<pre class="lines"></pre>
|
|
608
|
-
|
|
609
|
-
<p>13 14 15</pre></p>
|
|
610
|
-
|
|
611
|
-
<pre></td>
|
|
612
|
-
<td>
|
|
613
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span></pre>
|
|
614
|
-
|
|
615
|
-
<p><span class='kw'>def</span> <span class='id
|
|
616
|
-
identifier rubyid_genotype'>genotype</span></p>
|
|
617
|
-
|
|
618
|
-
<pre><span class='ivar'>@genotype</span></pre>
|
|
619
|
-
|
|
620
|
-
<p><span class='kw'>end</span></pre></p>
|
|
621
|
-
|
|
622
|
-
<pre> </td>
|
|
623
|
-
</tr></pre>
|
|
624
|
-
|
|
625
|
-
<p></table> </div></p>
|
|
626
|
-
|
|
627
|
-
<pre> <span id="novelty=-instance_method"></span>
|
|
628
|
-
<div class="method_details ">
|
|
629
|
-
<h3 class="signature " id="novelty-instance_method">
|
|
630
|
-
|
|
631
|
-
- (<tt>Object</tt>) <strong>novelty</strong></pre>
|
|
632
|
-
|
|
633
|
-
<p></h3><div class=“docstring”></p>
|
|
634
|
-
|
|
635
|
-
<pre><div class="discussion"></pre>
|
|
636
|
-
|
|
637
|
-
<p><p>Ratings assigned by Evaluator</p></p>
|
|
638
|
-
|
|
639
|
-
<pre></div></pre>
|
|
640
|
-
|
|
641
|
-
<p></div> <div class=“tags”></p>
|
|
642
|
-
|
|
643
|
-
<p></div><table class=“source_code”></p>
|
|
644
|
-
|
|
645
|
-
<pre><tr>
|
|
646
|
-
<td>
|
|
647
|
-
<pre class="lines"></pre>
|
|
648
|
-
|
|
649
|
-
<p>16 17 18</pre></p>
|
|
650
|
-
|
|
651
|
-
<pre></td>
|
|
652
|
-
<td>
|
|
653
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span></pre>
|
|
654
|
-
|
|
655
|
-
<p><span class='kw'>def</span> <span class='id
|
|
656
|
-
identifier rubyid_novelty'>novelty</span></p>
|
|
657
|
-
|
|
658
|
-
<pre><span class='ivar'>@novelty</span></pre>
|
|
659
|
-
|
|
660
|
-
<p><span class='kw'>end</span></pre></p>
|
|
661
|
-
|
|
662
|
-
<pre> </td>
|
|
663
|
-
</tr></pre>
|
|
664
|
-
|
|
665
|
-
<p></table> </div></p>
|
|
666
|
-
|
|
667
|
-
<pre> <span id="phenotype=-instance_method"></span>
|
|
668
|
-
<div class="method_details ">
|
|
669
|
-
<h3 class="signature " id="phenotype-instance_method">
|
|
670
|
-
|
|
671
|
-
- (<tt>Object</tt>) <strong>phenotype</strong></pre>
|
|
672
|
-
|
|
673
|
-
<p></h3><div class=“docstring”></p>
|
|
674
|
-
|
|
675
|
-
<pre><div class="discussion"></pre>
|
|
676
|
-
|
|
677
|
-
<p><p>Returns the value of attribute phenotype</p></p>
|
|
678
|
-
|
|
679
|
-
<pre></div></pre>
|
|
680
|
-
|
|
681
|
-
<p></div> <div class=“tags”></p>
|
|
682
|
-
|
|
683
|
-
<p></div><table class=“source_code”></p>
|
|
684
|
-
|
|
685
|
-
<pre><tr>
|
|
686
|
-
<td>
|
|
687
|
-
<pre class="lines"></pre>
|
|
688
|
-
|
|
689
|
-
<p>13 14 15</pre></p>
|
|
690
|
-
|
|
691
|
-
<pre></td>
|
|
692
|
-
<td>
|
|
693
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span></pre>
|
|
694
|
-
|
|
695
|
-
<p><span class='kw'>def</span> <span class='id
|
|
696
|
-
identifier rubyid_phenotype'>phenotype</span></p>
|
|
697
|
-
|
|
698
|
-
<pre><span class='ivar'>@phenotype</span></pre>
|
|
699
|
-
|
|
700
|
-
<p><span class='kw'>end</span></pre></p>
|
|
701
|
-
|
|
702
|
-
<pre> </td>
|
|
703
|
-
</tr></pre>
|
|
704
|
-
|
|
705
|
-
<p></table> </div></p>
|
|
706
|
-
|
|
707
|
-
<pre> <span id=""></span>
|
|
708
|
-
<div class="method_details ">
|
|
709
|
-
<h3 class="signature " id="population-instance_method">
|
|
710
|
-
|
|
711
|
-
- (<tt>Object</tt>) <strong>population</strong> <span class="extras">(readonly)</span></pre>
|
|
712
|
-
|
|
713
|
-
<p></h3><div class=“docstring”></p>
|
|
714
|
-
|
|
715
|
-
<pre><div class="discussion"></pre>
|
|
716
|
-
|
|
717
|
-
<p><p>Returns the value of attribute population</p></p>
|
|
718
|
-
|
|
719
|
-
<pre></div></pre>
|
|
720
|
-
|
|
721
|
-
<p></div> <div class=“tags”></p>
|
|
722
|
-
|
|
723
|
-
<p></div><table class=“source_code”></p>
|
|
724
|
-
|
|
725
|
-
<pre><tr>
|
|
726
|
-
<td>
|
|
727
|
-
<pre class="lines"></pre>
|
|
728
|
-
|
|
729
|
-
<p>12 13 14</pre></p>
|
|
730
|
-
|
|
731
|
-
<pre></td>
|
|
732
|
-
<td>
|
|
733
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 12</span></pre>
|
|
734
|
-
|
|
735
|
-
<p><span class='kw'>def</span> <span class='id
|
|
736
|
-
identifier rubyid_population'>population</span></p>
|
|
737
|
-
|
|
738
|
-
<pre><span class='ivar'>@population</span></pre>
|
|
739
|
-
|
|
740
|
-
<p><span class='kw'>end</span></pre></p>
|
|
741
|
-
|
|
742
|
-
<pre> </td>
|
|
743
|
-
</tr></pre>
|
|
744
|
-
|
|
745
|
-
<p></table> </div></p>
|
|
746
|
-
|
|
747
|
-
<pre></div>
|
|
748
|
-
|
|
749
|
-
<div id="instance_method_details" class="method_details_list">
|
|
750
|
-
<h2>Instance Method Details</h2>
|
|
751
|
-
|
|
752
|
-
<div class="method_details first">
|
|
753
|
-
<h3 class="signature first" id="compare-instance_method">
|
|
754
|
-
|
|
755
|
-
- (<tt>Object</tt>) <strong>compare</strong>(oc)</pre>
|
|
756
|
-
|
|
757
|
-
<p></h3><div class=“docstring”></p>
|
|
758
|
-
|
|
759
|
-
<pre><div class="discussion"></pre>
|
|
760
|
-
|
|
761
|
-
<p><p>Compare ourselves against another critter for
|
|
762
|
-
compability.</p></p>
|
|
763
|
-
|
|
764
|
-
<p><p>The function to be used here is: distance = c1*E + c2*D +
|
|
765
|
-
c3*W</p></p>
|
|
766
|
-
|
|
767
|
-
<p><p>Where: E, D - The number of excess and disjoint genes
|
|
768
|
-
repesctively. N - The number of genes in the largest genome. W - The sum of
|
|
769
|
-
absolute weight differences.</p></p>
|
|
770
|
-
|
|
771
|
-
<p><p>This is a variation of the formulation suggested by the Stanley
|
|
772
|
-
paper, which normalizes the E and D terms by N.</p></p>
|
|
773
|
-
|
|
774
|
-
<pre></div></pre>
|
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775
|
-
|
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776
|
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<p></div> <div class=“tags”></p>
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|
-
|
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|
-
<p></div><table class=“source_code”></p>
|
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|
-
|
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780
|
-
<pre><tr>
|
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781
|
-
<td>
|
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782
|
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<pre class="lines"></pre>
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|
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|
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784
|
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<p>333 334 335 336 337 338 339 340 341</pre></p>
|
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785
|
-
|
|
786
|
-
<pre></td>
|
|
787
|
-
<td>
|
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788
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 333</span></pre>
|
|
789
|
-
|
|
790
|
-
<p><span class='kw'>def</span> <span class='id
|
|
791
|
-
identifier rubyid_compare'>compare</span><span
|
|
792
|
-
class='lparen'>(</span><span class='id identifier
|
|
793
|
-
rubyid_oc'>oc</span><span
|
|
794
|
-
class='rparen'>)</span></p>
|
|
795
|
-
|
|
796
|
-
<pre><span class='id identifier rubyid_c1'>c1</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_excess_coefficient'>excess_coefficient</span>
|
|
797
|
-
<span class='id identifier rubyid_c2'>c2</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_disjoint_coefficient'>disjoint_coefficient</span>
|
|
798
|
-
<span class='id identifier rubyid_c3'>c3</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_weight_coefficient'>weight_coefficient</span>
|
|
799
|
-
<span class='id identifier rubyid_e'>e</span> <span class='op'>=</span> <span class='id identifier rubyid_excess'>excess</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
800
|
-
<span class='id identifier rubyid_d'>d</span> <span class='op'>=</span> <span class='id identifier rubyid_disjoint'>disjoint</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
801
|
-
<span class='id identifier rubyid_w'>w</span> <span class='op'>=</span> <span class='id identifier rubyid_weight_diff'>weight_diff</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
802
|
-
<span class='kw'>return</span> <span class='id identifier rubyid_c1'>c1</span> <span class='op'>*</span> <span class='id identifier rubyid_e'>e</span> <span class='op'>+</span> <span class='id identifier rubyid_c2'>c2</span> <span class='op'>*</span> <span class='id identifier rubyid_d'>d</span> <span class='op'>+</span> <span class='id identifier rubyid_c3'>c3</span> <span class='op'>*</span> <span class='id identifier rubyid_w'>w</span></pre>
|
|
803
|
-
|
|
804
|
-
<p><span class='kw'>end</span></pre></p>
|
|
805
|
-
|
|
806
|
-
<pre> </td>
|
|
807
|
-
</tr></pre>
|
|
808
|
-
|
|
809
|
-
<p></table> </div></p>
|
|
810
|
-
|
|
811
|
-
<pre> <div class="method_details ">
|
|
812
|
-
<h3 class="signature " id="dump_s-instance_method">
|
|
813
|
-
|
|
814
|
-
- (<tt>Object</tt>) <strong>dump_s</strong></pre>
|
|
815
|
-
|
|
816
|
-
<p></h3><div class=“docstring”></p>
|
|
817
|
-
|
|
818
|
-
<pre><div class="discussion"></pre>
|
|
819
|
-
|
|
820
|
-
<p><p>Critter print</p></p>
|
|
821
|
-
|
|
822
|
-
<pre></div></pre>
|
|
823
|
-
|
|
824
|
-
<p></div> <div class=“tags”></p>
|
|
825
|
-
|
|
826
|
-
<p></div><table class=“source_code”></p>
|
|
827
|
-
|
|
828
|
-
<pre><tr>
|
|
829
|
-
<td>
|
|
830
|
-
<pre class="lines"></pre>
|
|
831
|
-
|
|
832
|
-
<p>344 345 346</pre></p>
|
|
833
|
-
|
|
834
|
-
<pre></td>
|
|
835
|
-
<td>
|
|
836
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 344</span></pre>
|
|
837
|
-
|
|
838
|
-
<p><span class='kw'>def</span> <span class='id
|
|
839
|
-
identifier rubyid_dump_s'>dump_s</span></p>
|
|
840
|
-
|
|
841
|
-
<pre><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_dump_s'>dump_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>\n</span><span class='tstring_end'>&quot;</span></span> <span class='op'>+</span> <span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>\n</span><span class='tstring_end'>&quot;</span></span></pre>
|
|
842
|
-
|
|
843
|
-
<p><span class='kw'>end</span></pre></p>
|
|
844
|
-
|
|
845
|
-
<pre> </td>
|
|
846
|
-
</tr></pre>
|
|
847
|
-
|
|
848
|
-
<p></table> </div></p>
|
|
849
|
-
|
|
850
|
-
<pre> <div class="method_details ">
|
|
851
|
-
<h3 class="signature " id="evaluate!-instance_method">
|
|
852
|
-
|
|
853
|
-
- (<tt>Object</tt>) <strong>evaluate!</strong></pre>
|
|
854
|
-
|
|
855
|
-
<p></h3><div class=“docstring”></p>
|
|
856
|
-
|
|
857
|
-
<pre><div class="discussion"></pre>
|
|
858
|
-
|
|
859
|
-
<p><p>A single evaluation step. Evaluate and generate fitness, novelty,
|
|
860
|
-
etc. Returns the result.</p></p>
|
|
861
|
-
|
|
862
|
-
<pre></div></pre>
|
|
863
|
-
|
|
864
|
-
<p></div> <div class=“tags”></p>
|
|
865
|
-
|
|
866
|
-
<p></div><table class=“source_code”></p>
|
|
867
|
-
|
|
868
|
-
<pre><tr>
|
|
869
|
-
<td>
|
|
870
|
-
<pre class="lines"></pre>
|
|
871
|
-
|
|
872
|
-
<p>50 51 52</pre></p>
|
|
873
|
-
|
|
874
|
-
<pre></td>
|
|
875
|
-
<td>
|
|
876
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 50</span></pre>
|
|
877
|
-
|
|
878
|
-
<p><span class='kw'>def</span> <span class='id
|
|
879
|
-
identifier rubyid_evaluate!'>evaluate!</span></p>
|
|
880
|
-
|
|
881
|
-
<pre><span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evaluator'>evaluator</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span> <span class='kw'>self</span></pre>
|
|
882
|
-
|
|
883
|
-
<p><span class='kw'>end</span></pre></p>
|
|
884
|
-
|
|
885
|
-
<pre> </td>
|
|
886
|
-
</tr></pre>
|
|
887
|
-
|
|
888
|
-
<p></table> </div></p>
|
|
889
|
-
|
|
890
|
-
<pre> <div class="method_details ">
|
|
891
|
-
<h3 class="signature " id="express!-instance_method">
|
|
892
|
-
|
|
893
|
-
- (<tt>Object</tt>) <strong>express!</strong></pre>
|
|
894
|
-
|
|
895
|
-
<p></h3><div class=“docstring”></p>
|
|
896
|
-
|
|
897
|
-
<pre><div class="discussion"></pre>
|
|
898
|
-
|
|
899
|
-
<p><p>Exoress this critter using the Expressor plugin.</p></p>
|
|
900
|
-
|
|
901
|
-
<pre></div></pre>
|
|
902
|
-
|
|
903
|
-
<p></div> <div class=“tags”></p>
|
|
904
|
-
|
|
905
|
-
<p></div><table class=“source_code”></p>
|
|
906
|
-
|
|
907
|
-
<pre><tr>
|
|
908
|
-
<td>
|
|
909
|
-
<pre class="lines"></pre>
|
|
910
|
-
|
|
911
|
-
<p>36 37 38</pre></p>
|
|
912
|
-
|
|
913
|
-
<pre></td>
|
|
914
|
-
<td>
|
|
915
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 36</span></pre>
|
|
916
|
-
|
|
917
|
-
<p><span class='kw'>def</span> <span class='id
|
|
918
|
-
identifier rubyid_express!'>express!</span></p>
|
|
919
|
-
|
|
920
|
-
<pre><span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_expressor'>expressor</span><span class='period'>.</span><span class='id identifier rubyid_express!'>express!</span> <span class='kw'>self</span></pre>
|
|
921
|
-
|
|
922
|
-
<p><span class='kw'>end</span></pre></p>
|
|
923
|
-
|
|
924
|
-
<pre> </td>
|
|
925
|
-
</tr></pre>
|
|
926
|
-
|
|
927
|
-
<p></table> </div></p>
|
|
928
|
-
|
|
929
|
-
<pre> <div class="method_details ">
|
|
930
|
-
<h3 class="signature " id="initialize_neurons!-instance_method">
|
|
931
|
-
|
|
932
|
-
- (<tt>Object</tt>) <strong>initialize_neurons!</strong></pre>
|
|
933
|
-
|
|
934
|
-
<p></h3><div class=“docstring”></p>
|
|
935
|
-
|
|
936
|
-
<pre><div class="discussion"></pre>
|
|
937
|
-
|
|
938
|
-
<p><p>This initializes neurons in preparation for recurrence. Note that
|
|
939
|
-
the Critter should already have expressed its genotype before this is
|
|
940
|
-
called.</p></p>
|
|
941
|
-
|
|
942
|
-
<pre></div></pre>
|
|
943
|
-
|
|
944
|
-
<p></div> <div class=“tags”></p>
|
|
945
|
-
|
|
946
|
-
<p></div><table class=“source_code”></p>
|
|
947
|
-
|
|
948
|
-
<pre><tr>
|
|
949
|
-
<td>
|
|
950
|
-
<pre class="lines"></pre>
|
|
951
|
-
|
|
952
|
-
<p>43 44 45</pre></p>
|
|
953
|
-
|
|
954
|
-
<pre></td>
|
|
955
|
-
<td>
|
|
956
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 43</span></pre>
|
|
957
|
-
|
|
958
|
-
<p><span class='kw'>def</span> <span class='id
|
|
959
|
-
identifier
|
|
960
|
-
rubyid_initialize_neurons!'>initialize_neurons!</span></p>
|
|
961
|
-
|
|
962
|
-
<pre><span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_initialize_neurons'>initialize_neurons</span></pre>
|
|
963
|
-
|
|
964
|
-
<p><span class='kw'>end</span></pre></p>
|
|
965
|
-
|
|
966
|
-
<pre> </td>
|
|
967
|
-
</tr></pre>
|
|
968
|
-
|
|
969
|
-
<p></table> </div></p>
|
|
970
|
-
|
|
971
|
-
<pre> <div class="method_details ">
|
|
972
|
-
<h3 class="signature " id="ready_for_expression!-instance_method">
|
|
973
|
-
|
|
974
|
-
- (<tt>Object</tt>) <strong>ready_for_expression!</strong></pre>
|
|
975
|
-
|
|
976
|
-
<p></h3><div class=“docstring”></p>
|
|
977
|
-
|
|
978
|
-
<pre><div class="discussion"></pre>
|
|
979
|
-
|
|
980
|
-
<p><p>Get the Critter ready for the Expressor to express the
|
|
981
|
-
geneotype.</p></p>
|
|
982
|
-
|
|
983
|
-
<pre></div></pre>
|
|
984
|
-
|
|
985
|
-
<p></div> <div class=“tags”></p>
|
|
986
|
-
|
|
987
|
-
<p></div><table class=“source_code”></p>
|
|
988
|
-
|
|
989
|
-
<pre><tr>
|
|
990
|
-
<td>
|
|
991
|
-
<pre class="lines"></pre>
|
|
992
|
-
|
|
993
|
-
<p>29 30 31 32 33</pre></p>
|
|
994
|
-
|
|
995
|
-
<pre></td>
|
|
996
|
-
<td>
|
|
997
|
-
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 29</span></pre>
|
|
998
|
-
|
|
999
|
-
<p><span class='kw'>def</span> <span class='id
|
|
1000
|
-
identifier
|
|
1001
|
-
rubyid_ready_for_expression!'>ready_for_expression!</span></p>
|
|
1002
|
-
|
|
1003
|
-
<pre><span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_wire!'>wire!</span>
|
|
1004
|
-
<span class='ivar'>@phenotype</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Critter</span><span class='op'>::</span><span class='const'>Phenotype</span><span class='lbracket'>[</span><span class='kw'>self</span><span class='rbracket'>]</span>
|
|
1005
|
-
<span class='ivar'>@phenotype</span></pre>
|
|
1006
|
-
|
|
1007
|
-
<p><span class='kw'>end</span></pre></p>
|
|
1008
|
-
|
|
1009
|
-
<pre> </td>
|
|
1010
|
-
</tr></pre>
|
|
1011
|
-
|
|
1012
|
-
<p></table> </div></p>
|
|
1013
|
-
|
|
1014
|
-
<pre></div></pre>
|
|
1015
|
-
|
|
1016
|
-
<p></div></p>
|
|
1017
|
-
|
|
1018
|
-
<pre> <div id="footer">
|
|
1019
|
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Generated on Sun Mar 16 16:36:51 2014 by
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|
1020
|
-
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
|
|
1021
|
-
0.8.7.3 (ruby-2.1.1).</pre>
|
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|
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|
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<p></div></p>
|
|
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|
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|
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|
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|
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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1035
|
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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|
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