rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
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- data/Rakefile +19 -2
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- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
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- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
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<h1 id="class-NEAT::Controller-label-Controller+for+all+operations+of+RubyNEAT"><a href="Controller.html">Controller</a> for all operations of <a href="../RubyNEAT.html">RubyNEAT</a><span><a href="#class-NEAT::Controller-label-Controller+for+all+operations+of+RubyNEAT">¶</a> <a href="#documentation">↑</a></span></h1>
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<span class="method-name">neural_inputs</span><span
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<div class="method-description">
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<p>Class map of named input and output neurons (each critter will have
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instantiations of these) name: InputNeuralClass (usually InputNeuron)</p>
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</div>
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</div>
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|
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325
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<div id="attribute-i-neural_outputs" class="method-detail">
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<div class="method-heading attribute-method-heading">
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327
|
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<span class="method-name">neural_outputs</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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<div class="method-description">
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<p>Class map of named input and output neurons (each critter will have
|
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instantiations of these) name: InputNeuralClass (usually InputNeuron)</p>
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</div>
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</div>
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<div id="attribute-i-neuron_catalog" class="method-detail">
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<div class="method-heading attribute-method-heading">
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<span class="method-name">neuron_catalog</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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345
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<div class="method-description">
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<p>catalog of neurons classes to use { weight => nclass, … }</p>
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349
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</div>
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</div>
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-
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<div id="attribute-i-parms" class="method-detail">
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<div class="method-heading attribute-method-heading">
|
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|
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<span class="method-name">parms</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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<div class="method-description">
|
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359
|
-
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<p>Parameters for evolution (NeatParameters)</p>
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|
-
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362
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</div>
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|
-
</div>
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364
|
-
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365
|
-
<div id="attribute-i-population" class="method-detail">
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|
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<div class="method-heading attribute-method-heading">
|
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367
|
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<span class="method-name">population</span><span
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|
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class="attribute-access-type">[R]</span>
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369
|
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</div>
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|
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371
|
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<div class="method-description">
|
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|
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|
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<p>population object and class specification</p>
|
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374
|
-
|
|
375
|
-
</div>
|
|
376
|
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</div>
|
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377
|
-
|
|
378
|
-
<div id="attribute-i-population_class" class="method-detail">
|
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379
|
-
<div class="method-heading attribute-method-heading">
|
|
380
|
-
<span class="method-name">population_class</span><span
|
|
381
|
-
class="attribute-access-type">[R]</span>
|
|
382
|
-
</div>
|
|
383
|
-
|
|
384
|
-
<div class="method-description">
|
|
385
|
-
|
|
386
|
-
<p>population object and class specification</p>
|
|
387
|
-
|
|
388
|
-
</div>
|
|
389
|
-
</div>
|
|
390
|
-
|
|
391
|
-
<div id="attribute-i-population_history" class="method-detail">
|
|
392
|
-
<div class="method-heading attribute-method-heading">
|
|
393
|
-
<span class="method-name">population_history</span><span
|
|
394
|
-
class="attribute-access-type">[R]</span>
|
|
395
|
-
</div>
|
|
396
|
-
|
|
397
|
-
<div class="method-description">
|
|
398
|
-
|
|
399
|
-
<p>population object and class specification</p>
|
|
400
|
-
|
|
401
|
-
</div>
|
|
402
|
-
</div>
|
|
403
|
-
|
|
404
|
-
<div id="attribute-i-query_func" class="method-detail">
|
|
405
|
-
<div class="method-heading attribute-method-heading">
|
|
406
|
-
<span class="method-name">query_func</span><span
|
|
407
|
-
class="attribute-access-type">[RW]</span>
|
|
408
|
-
</div>
|
|
409
|
-
|
|
410
|
-
<div class="method-description">
|
|
411
|
-
|
|
412
|
-
<p>Query function that Critters shall call.</p>
|
|
413
|
-
|
|
414
|
-
</div>
|
|
415
|
-
</div>
|
|
416
|
-
|
|
417
|
-
<div id="attribute-i-recurrence_func" class="method-detail">
|
|
418
|
-
<div class="method-heading attribute-method-heading">
|
|
419
|
-
<span class="method-name">recurrence_func</span><span
|
|
420
|
-
class="attribute-access-type">[RW]</span>
|
|
421
|
-
</div>
|
|
422
|
-
|
|
423
|
-
<div class="method-description">
|
|
424
|
-
|
|
425
|
-
<p>Recurrence function that Critters will yield to.</p>
|
|
426
|
-
|
|
427
|
-
</div>
|
|
428
|
-
</div>
|
|
429
|
-
|
|
430
|
-
<div id="attribute-i-report_hook" class="method-detail">
|
|
431
|
-
<div class="method-heading attribute-method-heading">
|
|
432
|
-
<span class="method-name">report_hook</span><span
|
|
433
|
-
class="attribute-access-type">[RW]</span>
|
|
434
|
-
</div>
|
|
435
|
-
|
|
436
|
-
<div class="method-description">
|
|
437
|
-
|
|
438
|
-
<p>End run function to call at the end of each generational run Also <a
|
|
439
|
-
href="Controller.html#attribute-i-report_hook">#report_hook</a> to dump
|
|
440
|
-
reports for the user, etc.</p>
|
|
441
|
-
|
|
442
|
-
</div>
|
|
443
|
-
</div>
|
|
444
|
-
|
|
445
|
-
<div id="attribute-i-seq_num" class="method-detail">
|
|
446
|
-
<div class="method-heading attribute-method-heading">
|
|
447
|
-
<span class="method-name">seq_num</span><span
|
|
448
|
-
class="attribute-access-type">[R]</span>
|
|
449
|
-
</div>
|
|
450
|
-
|
|
451
|
-
<div class="method-description">
|
|
452
|
-
|
|
453
|
-
<p>current sequence number being evaluated</p>
|
|
454
|
-
|
|
455
|
-
</div>
|
|
456
|
-
</div>
|
|
457
|
-
|
|
458
|
-
<div id="attribute-i-stop_on_fit_func" class="method-detail">
|
|
459
|
-
<div class="method-heading attribute-method-heading">
|
|
460
|
-
<span class="method-name">stop_on_fit_func</span><span
|
|
461
|
-
class="attribute-access-type">[RW]</span>
|
|
462
|
-
</div>
|
|
463
|
-
|
|
464
|
-
<div class="method-description">
|
|
465
|
-
|
|
466
|
-
<p>Compare function for fitness Cost function for integrating in the cost to
|
|
467
|
-
the fitness scalar.</p>
|
|
468
|
-
|
|
469
|
-
</div>
|
|
470
|
-
</div>
|
|
471
|
-
|
|
472
|
-
<div id="attribute-i-verbosity" class="method-detail">
|
|
473
|
-
<div class="method-heading attribute-method-heading">
|
|
474
|
-
<span class="method-name">verbosity</span><span
|
|
475
|
-
class="attribute-access-type">[RW]</span>
|
|
476
|
-
</div>
|
|
477
|
-
|
|
478
|
-
<div class="method-description">
|
|
479
|
-
|
|
480
|
-
<p>Global verbosity level:</p>
|
|
481
|
-
|
|
482
|
-
<pre>1 - normal (the default)
|
|
483
|
-
2 - really verbose
|
|
484
|
-
3 - maximally verbose</pre>
|
|
485
|
-
|
|
486
|
-
<p>Use in conjunction with log.debug</p>
|
|
487
|
-
|
|
488
|
-
</div>
|
|
489
|
-
</div>
|
|
490
|
-
|
|
491
|
-
</section>
|
|
492
|
-
|
|
493
|
-
|
|
494
|
-
|
|
495
|
-
<section id="public-class-5Buntitled-5D-method-details" class="method-section">
|
|
496
|
-
<header>
|
|
497
|
-
<h3>Public Class Methods</h3>
|
|
498
|
-
</header>
|
|
499
|
-
|
|
500
|
-
|
|
501
|
-
<div id="method-c-new" class="method-detail ">
|
|
502
|
-
|
|
503
|
-
<div class="method-heading">
|
|
504
|
-
<span class="method-name">new</span><span
|
|
505
|
-
class="method-args">(neural_inputs: nil, neural_outputs: nil, neural_hidden: nil, parameters: NeatSettings.new, &block)</span>
|
|
506
|
-
|
|
507
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
508
|
-
|
|
509
|
-
</div>
|
|
510
|
-
|
|
511
|
-
|
|
512
|
-
<div class="method-description">
|
|
513
|
-
|
|
514
|
-
<ul><li>
|
|
515
|
-
<p><a href="Controller.html#attribute-i-neural_inputs">#neural_inputs</a> –
|
|
516
|
-
array of input classes</p>
|
|
517
|
-
</li><li>
|
|
518
|
-
<p><a href="Controller.html#attribute-i-neural_outputs">#neural_outputs</a> –
|
|
519
|
-
array of output classes</p>
|
|
520
|
-
</li><li>
|
|
521
|
-
<p>parameters – NeatParameters object, or a path to a YAML file to create
|
|
522
|
-
this.</p>
|
|
523
|
-
</li></ul>
|
|
524
|
-
|
|
525
|
-
|
|
526
|
-
<div class="method-calls-super">
|
|
527
|
-
Calls superclass method
|
|
528
|
-
<a href="NeatOb.html#method-c-new">NEAT::NeatOb.new</a>
|
|
529
|
-
</div>
|
|
530
|
-
|
|
531
|
-
|
|
532
|
-
|
|
533
|
-
<div class="method-source-code" id="new-source">
|
|
534
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 334</span>
|
|
535
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">neural_inputs</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
|
536
|
-
<span class="ruby-identifier">neural_outputs</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
|
537
|
-
<span class="ruby-identifier">neural_hidden</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
|
538
|
-
<span class="ruby-identifier">parameters</span><span class="ruby-operator">:</span> <span class="ruby-constant">NeatSettings</span>.<span class="ruby-identifier">new</span>,
|
|
539
|
-
<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
540
|
-
<span class="ruby-keyword">super</span>(<span class="ruby-keyword">self</span>)
|
|
541
|
-
<span class="ruby-ivar">@verbosity</span> = <span class="ruby-value">1</span>
|
|
542
|
-
<span class="ruby-ivar">@glob_innov_num</span> = <span class="ruby-value">0</span>
|
|
543
|
-
<span class="ruby-ivar">@gaussian</span> = <span class="ruby-constant">Distribution</span><span class="ruby-operator">::</span><span class="ruby-constant">Normal</span>.<span class="ruby-identifier">rng</span>
|
|
544
|
-
<span class="ruby-ivar">@population_history</span> = []
|
|
545
|
-
<span class="ruby-ivar">@evolver</span> = <span class="ruby-constant">Evolver</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
|
|
546
|
-
<span class="ruby-ivar">@expressor</span> = <span class="ruby-constant">Expressor</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
|
|
547
|
-
|
|
548
|
-
<span class="ruby-ivar">@neuron_catalog</span> = <span class="ruby-constant">Neuron</span><span class="ruby-operator">::</span><span class="ruby-identifier">neuron_types</span>.<span class="ruby-identifier">clone</span>
|
|
549
|
-
<span class="ruby-ivar">@neural_inputs</span> = <span class="ruby-identifier">neural_inputs</span>
|
|
550
|
-
<span class="ruby-ivar">@neural_outputs</span> = <span class="ruby-identifier">neural_outputs</span>
|
|
551
|
-
<span class="ruby-ivar">@neural_hidden</span> = <span class="ruby-identifier">neural_hidden</span>
|
|
552
|
-
|
|
553
|
-
<span class="ruby-comment"># Default classes for population and operators, etc.</span>
|
|
554
|
-
<span class="ruby-ivar">@population_class</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Population</span>
|
|
555
|
-
<span class="ruby-ivar">@evaluator_class</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Evaluator</span>
|
|
556
|
-
<span class="ruby-ivar">@expressor_class</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Expressor</span>
|
|
557
|
-
<span class="ruby-ivar">@evolver_class</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Evolver</span>
|
|
558
|
-
|
|
559
|
-
<span class="ruby-comment"># Handle the parameters parameter. :-)</span>
|
|
560
|
-
<span class="ruby-ivar">@parms</span> = <span class="ruby-keyword">unless</span> <span class="ruby-identifier">parameters</span>.<span class="ruby-identifier">kind_of?</span> <span class="ruby-constant">String</span>
|
|
561
|
-
<span class="ruby-identifier">parameters</span>
|
|
562
|
-
<span class="ruby-keyword">else</span> <span class="ruby-comment"># load it from a file</span>
|
|
563
|
-
<span class="ruby-identifier">open</span>(<span class="ruby-identifier">parameters</span>, <span class="ruby-string">'r'</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">fd</span><span class="ruby-operator">|</span> <span class="ruby-constant">YAML</span><span class="ruby-operator">::</span><span class="ruby-identifier">load</span> <span class="ruby-identifier">fd</span>.<span class="ruby-identifier">read</span> }
|
|
564
|
-
<span class="ruby-keyword">end</span>
|
|
565
|
-
<span class="ruby-identifier">block</span>.(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">block</span>.<span class="ruby-identifier">nil?</span>
|
|
566
|
-
<span class="ruby-keyword">end</span></pre>
|
|
567
|
-
</div>
|
|
568
|
-
|
|
569
|
-
</div>
|
|
570
|
-
|
|
571
|
-
|
|
572
|
-
|
|
573
|
-
|
|
574
|
-
</div>
|
|
575
|
-
|
|
576
|
-
|
|
577
|
-
</section>
|
|
578
|
-
|
|
579
|
-
<section id="public-instance-5Buntitled-5D-method-details" class="method-section">
|
|
580
|
-
<header>
|
|
581
|
-
<h3>Public Instance Methods</h3>
|
|
582
|
-
</header>
|
|
583
|
-
|
|
584
|
-
|
|
585
|
-
<div id="method-i-gaussian" class="method-detail ">
|
|
586
|
-
|
|
587
|
-
<div class="method-heading">
|
|
588
|
-
<span class="method-name">gaussian</span><span
|
|
589
|
-
class="method-args">()</span>
|
|
590
|
-
|
|
591
|
-
<span class="method-click-advice">click to toggle source</span>
|
|
592
|
-
|
|
593
|
-
</div>
|
|
594
|
-
|
|
595
|
-
|
|
596
|
-
<div class="method-description">
|
|
597
|
-
|
|
598
|
-
|
|
599
|
-
|
|
600
|
-
|
|
601
|
-
|
|
602
|
-
|
|
603
|
-
<div class="method-source-code" id="gaussian-source">
|
|
604
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 368</span>
|
|
605
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">gaussian</span> ; <span class="ruby-ivar">@gaussian</span>.() ; <span class="ruby-keyword">end</span></pre>
|
|
606
|
-
</div>
|
|
607
|
-
|
|
608
|
-
</div>
|
|
609
|
-
|
|
610
|
-
|
|
611
|
-
|
|
612
|
-
|
|
613
|
-
</div>
|
|
614
|
-
|
|
615
|
-
|
|
616
|
-
<div id="method-i-new_innovation" class="method-detail ">
|
|
617
|
-
|
|
618
|
-
<div class="method-heading">
|
|
619
|
-
<span class="method-name">new_innovation</span><span
|
|
620
|
-
class="method-args">()</span>
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622
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<div class="method-source-code" id="new_innovation-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 367</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">new_innovation</span> ; <span class="ruby-ivar">@glob_innov_num</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>; <span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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</div>
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<div id="method-i-run" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">run</span><span
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class="method-args">()</span>
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653
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<span class="method-click-advice">click to toggle source</span>
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654
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655
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</div>
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<div class="method-description">
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659
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<p>Run this evolution.</p>
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<div class="method-source-code" id="run-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 371</span>
|
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667
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">run</span>
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|
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<span class="ruby-identifier">pre_run_initialize</span>
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(<span class="ruby-value">1</span><span class="ruby-operator">..</span><span class="ruby-ivar">@parms</span>.<span class="ruby-identifier">max_generations</span>).<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">gen_number</span><span class="ruby-operator">|</span>
|
|
670
|
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<span class="ruby-ivar">@generation_num</span> = <span class="ruby-identifier">gen_number</span>
|
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671
|
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<span class="ruby-ivar">@population_history</span> <span class="ruby-operator"><<</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@population</span>.<span class="ruby-identifier">nil?</span>
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672
|
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<span class="ruby-ivar">@population</span>
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673
|
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<span class="ruby-keyword">else</span>
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674
|
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<span class="ruby-ivar">@population</span> = <span class="ruby-ivar">@population_class</span>.<span class="ruby-identifier">new</span>(<span class="ruby-keyword">self</span>)
|
|
675
|
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<span class="ruby-keyword">end</span>
|
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676
|
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<span class="ruby-ivar">@population_history</span>.<span class="ruby-identifier">shift</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@population_history</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator"><=</span> <span class="ruby-ivar">@parms</span>.<span class="ruby-identifier">max_population_history</span>
|
|
677
|
-
<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">mutate!</span>
|
|
678
|
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<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">express!</span>
|
|
679
|
-
|
|
680
|
-
<span class="ruby-comment">## Evaluate population</span>
|
|
681
|
-
<span class="ruby-ivar">@evaluator</span>.<span class="ruby-identifier">ready_for_evaluation</span> <span class="ruby-ivar">@population</span>
|
|
682
|
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(<span class="ruby-ivar">@parms</span>.<span class="ruby-identifier">start_sequence_at</span> <span class="ruby-operator">..</span> <span class="ruby-ivar">@parms</span>.<span class="ruby-identifier">end_sequence_at</span>).<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">snum</span><span class="ruby-operator">|</span>
|
|
683
|
-
<span class="ruby-ivar">@seq_num</span> = <span class="ruby-identifier">snum</span>
|
|
684
|
-
<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">evaluate!</span>
|
|
685
|
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<span class="ruby-keyword">end</span>
|
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686
|
-
|
|
687
|
-
<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">analyze!</span>
|
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688
|
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<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">speciate!</span>
|
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689
|
-
|
|
690
|
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<span class="ruby-identifier">$log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-ivar">@population</span>.<span class="ruby-identifier">dump_s</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@verbosity</span> <span class="ruby-operator"><</span> <span class="ruby-value">3</span>
|
|
691
|
-
|
|
692
|
-
<span class="ruby-identifier">new_pop</span> = <span class="ruby-ivar">@population</span>.<span class="ruby-identifier">evolve</span>
|
|
693
|
-
|
|
694
|
-
<span class="ruby-comment">## Report hook for evaluation</span>
|
|
695
|
-
<span class="ruby-ivar">@report_hook</span>.(<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">report</span>) <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@report_hook</span>.<span class="ruby-identifier">nil?</span>
|
|
696
|
-
|
|
697
|
-
<span class="ruby-comment">## Exit if fitness criteria is reached</span>
|
|
698
|
-
<span class="ruby-comment">#FIXME handle this exit condition better!!!!!</span>
|
|
699
|
-
<span class="ruby-identifier">exit</span> <span class="ruby-keyword">if</span> <span class="ruby-ivar">@stop_on_fit_func</span>.(<span class="ruby-ivar">@population</span>.<span class="ruby-identifier">report</span>[<span class="ruby-value">:fitness</span>], <span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@stop_on_fit_func</span>.<span class="ruby-identifier">nil?</span>
|
|
700
|
-
|
|
701
|
-
<span class="ruby-comment">## Evolve population</span>
|
|
702
|
-
<span class="ruby-ivar">@population</span> = <span class="ruby-identifier">new_pop</span>
|
|
703
|
-
|
|
704
|
-
<span class="ruby-comment">## Finish up this run</span>
|
|
705
|
-
<span class="ruby-ivar">@end_run_func</span>.(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@end_run_func</span>.<span class="ruby-identifier">nil?</span>
|
|
706
|
-
<span class="ruby-keyword">end</span>
|
|
707
|
-
<span class="ruby-keyword">end</span></pre>
|
|
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|
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</div>
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709
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</div>
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713
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</div>
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</section>
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</section>
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</main>
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<footer id="validator-badges" role="contentinfo">
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725
|
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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|
726
|
-
<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
|
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727
|
-
<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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</footer>
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