rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5
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- checksums.yaml +4 -4
- data/.semver +1 -1
- data/Gemfile +19 -19
- data/Gemfile.lock +39 -33
- data/README.md +66 -0
- data/Rakefile +19 -2
- data/bin/neat +4 -60
- data/lib/rubyneat/cli.rb +5 -0
- data/lib/rubyneat/cli/generate.rb +131 -0
- data/lib/rubyneat/cli/main.rb +54 -0
- data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
- data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
- data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
- data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
- data/rubyneat.gemspec +73 -297
- data/rubyneat.gemspec.orig +384 -0
- metadata +76 -292
- data/.idea/.name +0 -1
- data/.idea/.rakeTasks +0 -7
- data/.idea/dictionaries/trader.xml +0 -3
- data/.idea/encodings.xml +0 -5
- data/.idea/misc.xml +0 -5
- data/.idea/modules.xml +0 -9
- data/.idea/rubyneat.iml +0 -198
- data/.idea/runConfigurations/invpend_neat.xml +0 -26
- data/.idea/runConfigurations/sigdebug_neat.xml +0 -24
- data/.idea/runConfigurations/xor_neat.xml +0 -26
- data/.idea/runConfigurations/xordebug_neat.xml +0 -24
- data/.idea/runConfigurations/xorsin_neat.xml +0 -24
- data/.idea/scopes/scope_settings.xml +0 -5
- data/.idea/vcs.xml +0 -7
- data/.idea/workspace.xml +0 -1151
- data/.yardoc/checksums +0 -11
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Guardfile +0 -8
- data/doc/ControllerPoint.html +0 -125
- data/doc/CuteA.html +0 -286
- data/doc/CuteB.html +0 -297
- data/doc/DSL.html +0 -883
- data/doc/NEAT.html +0 -588
- data/doc/NEAT/BasicNeuronTypes.html +0 -136
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -518
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -366
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -275
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -274
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -274
- data/doc/NEAT/Controller.html +0 -2490
- data/doc/NEAT/Controller/NeatSettings.html +0 -3985
- data/doc/NEAT/Critter.html +0 -1037
- data/doc/NEAT/Critter/Genotype.html +0 -1601
- data/doc/NEAT/Critter/Genotype/Gene.html +0 -979
- data/doc/NEAT/Critter/Phenotype.html +0 -603
- data/doc/NEAT/DSL.html +0 -1255
- data/doc/NEAT/Evaluator.html +0 -420
- data/doc/NEAT/Evolver.html +0 -602
- data/doc/NEAT/Evolver/CritterOp.html +0 -551
- data/doc/NEAT/Expressor.html +0 -327
- data/doc/NEAT/Graph.html +0 -402
- data/doc/NEAT/Graph/DependencyResolver.html +0 -478
- data/doc/NEAT/Graph/GraphException.html +0 -123
- data/doc/NEAT/NeatException.html +0 -123
- data/doc/NEAT/NeatOb.html +0 -567
- data/doc/NEAT/Neuron.html +0 -1067
- data/doc/NEAT/Operator.html +0 -162
- data/doc/NEAT/Population.html +0 -1961
- data/doc/NEAT/Trait.html +0 -169
- data/doc/_index.html +0 -373
- data/doc/class_list.html +0 -54
- data/doc/css/common.css +0 -1
- data/doc/css/full_list.css +0 -57
- data/doc/css/style.css +0 -339
- data/doc/file_list.html +0 -53
- data/doc/frames.html +0 -26
- data/doc/index.html +0 -373
- data/doc/js/app.js +0 -219
- data/doc/js/full_list.js +0 -178
- data/doc/js/jquery.js +0 -4
- data/doc/method_list.html +0 -1415
- data/doc/top-level-namespace.html +0 -164
- data/foo/foo_aquarium_example.rb +0 -38
- data/foo/foo_gosu.rb +0 -99
- data/foo/foo_rubygoo.rb +0 -104
- data/foo/foo_sdl.rb +0 -34
- data/foo/icon.png +0 -0
- data/neater/invpend_neat.rb +0 -150
- data/neater/rnlib/inverted_pendulum.rb +0 -380
- data/neater/rnlib/xor.rb +0 -10
- data/neater/sigdebug_neat.rb +0 -136
- data/neater/xoranalog_neat.rb +0 -138
- data/neater/xorsin_neat.rb +0 -143
- data/projectFilesBackup/.idea/rubyneat.iml +0 -180
- data/public/.directory +0 -4
- data/public/background.png +0 -0
- data/public/background.xcf +0 -0
- data/public/cart.png +0 -0
- data/public/cart.xcf +0 -0
- data/public/metalpoles_molton_ball_l.jpg +0 -0
- data/public/old_background.png +0 -0
- data/public/pointer.png +0 -0
- data/public/pointer.xcf +0 -0
- data/public/pole.kra +0 -0
- data/public/pole.png +0 -0
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- data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
- data/public/wheel.png +0 -0
- data/public/wheel.xcf +0 -0
- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +0 -116
- data/rdoc/CuteA.html +0 -177
- data/rdoc/CuteB.html +0 -178
- data/rdoc/DSLSetup.html +0 -177
- data/rdoc/GameTestWindow.html +0 -242
- data/rdoc/GameWindow.html +0 -292
- data/rdoc/Gemfile.html +0 -215
- data/rdoc/Gemfile_lock.html +0 -327
- data/rdoc/GraphTest.html +0 -210
- data/rdoc/Guardfile.html +0 -198
- data/rdoc/InvertedPendulum.html +0 -198
- data/rdoc/InvertedPendulum/Cart.html +0 -668
- data/rdoc/InvertedPendulum/DSL.html +0 -259
- data/rdoc/InvertedPendulum/InvPendWindow.html +0 -402
- data/rdoc/Logger.html +0 -98
- data/rdoc/NEAT.html +0 -422
- data/rdoc/NEAT/BasicNeuronTypes.html +0 -107
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +0 -265
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +0 -206
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +0 -162
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +0 -161
- data/rdoc/NEAT/Controller.html +0 -729
- data/rdoc/NEAT/Controller/NeatSettings.html +0 -880
- data/rdoc/NEAT/Critter.html +0 -489
- data/rdoc/NEAT/Critter/Genotype.html +0 -735
- data/rdoc/NEAT/Critter/Genotype/Gene.html +0 -457
- data/rdoc/NEAT/Critter/Phenotype.html +0 -330
- data/rdoc/NEAT/DSL.html +0 -729
- data/rdoc/NEAT/Evaluator.html +0 -256
- data/rdoc/NEAT/Evolver.html +0 -891
- data/rdoc/NEAT/Evolver/CritterOp.html +0 -349
- data/rdoc/NEAT/Expressor.html +0 -402
- data/rdoc/NEAT/Graph.html +0 -263
- data/rdoc/NEAT/Graph/DependencyResolver.html +0 -291
- data/rdoc/NEAT/Graph/GraphException.html +0 -105
- data/rdoc/NEAT/NeatException.html +0 -105
- data/rdoc/NEAT/NeatOb.html +0 -325
- data/rdoc/NEAT/Neuron.html +0 -481
- data/rdoc/NEAT/Operator.html +0 -109
- data/rdoc/NEAT/Population.html +0 -935
- data/rdoc/NEAT/Trait.html +0 -117
- data/rdoc/Object.html +0 -384
- data/rdoc/Phi.html +0 -98
- data/rdoc/Player.html +0 -383
- data/rdoc/Rakefile.html +0 -254
- data/rdoc/RubyNEAT.html +0 -98
- data/rdoc/RubyNEAT/Application.html +0 -105
- data/rdoc/SDL.html +0 -98
- data/rdoc/SDL/Event2.html +0 -98
- data/rdoc/Vector.html +0 -195
- data/rdoc/created.rid +0 -125
- data/rdoc/doc/ControllerPoint_html.html +0 -299
- data/rdoc/doc/CuteA_html.html +0 -438
- data/rdoc/doc/CuteB_html.html +0 -436
- data/rdoc/doc/DSL_html.html +0 -992
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +0 -617
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +0 -498
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +0 -413
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +0 -412
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +0 -310
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +0 -3324
- data/rdoc/doc/NEAT/Controller_html.html +0 -2212
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +0 -997
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +0 -1556
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +0 -687
- data/rdoc/doc/NEAT/Critter_html.html +0 -1037
- data/rdoc/doc/NEAT/DSL_html.html +0 -1349
- data/rdoc/doc/NEAT/Evaluator_html.html +0 -556
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +0 -690
- data/rdoc/doc/NEAT/Evolver_html.html +0 -677
- data/rdoc/doc/NEAT/Expressor_html.html +0 -468
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +0 -598
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +0 -299
- data/rdoc/doc/NEAT/Graph_html.html +0 -527
- data/rdoc/doc/NEAT/NeatException_html.html +0 -299
- data/rdoc/doc/NEAT/NeatOb_html.html +0 -671
- data/rdoc/doc/NEAT/Neuron_html.html +0 -1095
- data/rdoc/doc/NEAT/Operator_html.html +0 -337
- data/rdoc/doc/NEAT/Population_html.html +0 -1795
- data/rdoc/doc/NEAT/Trait_html.html +0 -344
- data/rdoc/doc/NEAT_html.html +0 -736
- data/rdoc/doc/_index_html.html +0 -559
- data/rdoc/doc/class_list_html.html +0 -369
- data/rdoc/doc/css/common_css.html +0 -188
- data/rdoc/doc/css/full_list_css.html +0 -243
- data/rdoc/doc/css/style_css.html +0 -530
- data/rdoc/doc/file_list_html.html +0 -240
- data/rdoc/doc/frames_html.html +0 -217
- data/rdoc/doc/index_html.html +0 -559
- data/rdoc/doc/js/app_js.html +0 -423
- data/rdoc/doc/js/full_list_js.html +0 -372
- data/rdoc/doc/js/jquery_js.html +0 -1536
- data/rdoc/doc/method_list_html.html +0 -1375
- data/rdoc/doc/top-level-namespace_html.html +0 -317
- data/rdoc/fonts.css +0 -167
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
- data/rdoc/images/bullet_black.png +0 -0
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- data/rdoc/images/delete.png +0 -0
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- data/rdoc/js/darkfish.js +0 -140
- data/rdoc/js/jquery.js +0 -18
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- data/rdoc/js/search.js +0 -109
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- data/rdoc/js/searcher.js +0 -228
- data/rdoc/rdoc.css +0 -580
- data/rdoc/rubyneat_gemspec.html +0 -387
- data/rdoc/table_of_contents.html +0 -2502
- data/rdoc/xordebug_log.html +0 -170598
- data/rdoc/xorsin_log.html +0 -22569
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<h1 id="class-NEAT::Operator-label-Base+class+of+operators+in+RubyNEAT%2C">Base class of operators in <a href="../RubyNEAT.html">RubyNEAT</a>,<span><a href="#class-NEAT::Operator-label-Base+class+of+operators+in+RubyNEAT%2C">¶</a> <a href="#documentation">↑</a></span></h1>
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<h1 id="class-NEAT::Population-label-Population+of+NEAT+Critters."><a href="Population.html">Population</a> of <a href="../NEAT.html">NEAT</a> Critters.<span><a href="#class-NEAT::Population-label-Population+of+NEAT+Critters.">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>The Population
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In ourselves we have the pool of neurons the critters all use.
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expression, all the phenotypes shall be created individually.</pre>
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<p>Ordered list or hash of input neuron classes (all critters generated here
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 37</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">c</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-keyword">super</span>
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<span class="ruby-ivar">@input_neurons</span> = <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">clone</span>
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<span class="ruby-ivar">@output_neurons</span> = <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">clone</span>
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<span class="ruby-ivar">@hidden_neurons</span> = <span class="ruby-keyword">unless</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_hidden</span>.<span class="ruby-identifier">nil?</span>
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<span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_hidden</span>
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<span class="ruby-identifier">c</span>.<span class="ruby-identifier">neuron_catalog</span>.<span class="ruby-identifier">keep_if</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span> <span class="ruby-keyword">not</span> <span class="ruby-identifier">n</span>.<span class="ruby-identifier">input?</span>}
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<span class="ruby-ivar">@critters</span> = (<span class="ruby-value">0</span> <span class="ruby-operator">...</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">start_population_size</span> <span class="ruby-operator">||</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">population_size</span>).<span class="ruby-identifier">map</span> <span class="ruby-keyword">do</span>
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<span class="ruby-constant">Critter</span>.<span class="ruby-identifier">new</span>(<span class="ruby-keyword">self</span>)
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<span class="ruby-identifier">block</span>.(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">block</span>.<span class="ruby-identifier">nil?</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 74</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">analyze!</span>
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evaluator</span>.<span class="ruby-identifier">analyze_for_fitness!</span> <span class="ruby-identifier">critter</span> }
|
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<span class="ruby-keyword">end</span></pre>
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|
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<span class="method-name">best_critter</span><span
|
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class="method-args">()</span>
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|
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<p>The “best critter” is the critter with the lowest (closet to zero) fitness
|
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|
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rating.</p>
|
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 176</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">best_critter</span>
|
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<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.<span class="ruby-identifier">nil?</span>
|
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">min</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.(<span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span>, <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>) }
|
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<span class="ruby-keyword">else</span>
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">min</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator"><=></span> <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>}
|
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">end</span></pre>
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|
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<div id="method-i-dump_s" class="method-detail ">
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|
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<div class="method-heading">
|
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|
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<span class="method-name">dump_s</span><span
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">dump_s</span>
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<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">"\npopulation:\n"</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">dump_s</span> }.<span class="ruby-identifier">join</span>(<span class="ruby-string">"\n"</span>)
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<p>Called for each sequence.</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 69</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evaluate!</span>
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">evaluate!</span> }
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<span class="ruby-keyword">end</span></pre>
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</div>
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<span class="method-name">evolve</span><span
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class="method-args">()</span>
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<p>Call this after evaluation. Returns a newly-evolved population.</p>
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<div class="method-source-code" id="evolve-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 80</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evolve</span>
|
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<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evolver</span>.<span class="ruby-identifier">evolve</span> <span class="ruby-keyword">self</span>
|
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<span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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</div>
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<div id="method-i-express-21" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">express!</span><span
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<p>Express the entire population.</p>
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<div class="method-source-code" id="express-21-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 64</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">express!</span>
|
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|
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">express!</span> }
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<span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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<div id="method-i-initialize_for_recurrence-21" class="method-detail ">
|
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<div class="method-heading">
|
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<span class="method-name">initialize_for_recurrence!</span><span
|
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class="method-args">()</span>
|
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<span class="method-click-advice">click to toggle source</span>
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</div>
|
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|
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|
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<div class="method-description">
|
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|
536
|
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<p>Make sure all critters are reset and prepared for recurrent network
|
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evaluation.</p>
|
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<div class="method-source-code" id="initialize_for_recurrence-21-source">
|
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 54</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize_for_recurrence!</span>
|
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|
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">initialize_neurons!</span>}
|
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<span class="ruby-keyword">end</span></pre>
|
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</div>
|
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</div>
|
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</div>
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|
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<div id="method-i-mutate-21" class="method-detail ">
|
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559
|
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<div class="method-heading">
|
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<span class="method-name">mutate!</span><span
|
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|
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class="method-args">()</span>
|
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
|
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<p>Mutate the genes and neurons.</p>
|
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<div class="method-source-code" id="mutate-21-source">
|
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 59</span>
|
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|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate!</span>
|
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|
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<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evolver</span>.<span class="ruby-identifier">mutate!</span> <span class="ruby-keyword">self</span>
|
579
|
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<span class="ruby-keyword">end</span></pre>
|
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</div>
|
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|
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</div>
|
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|
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|
-
<div id="method-i-report" class="method-detail ">
|
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|
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|
-
<div class="method-heading">
|
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<span class="method-name">report</span><span
|
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|
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class="method-args">()</span>
|
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-
|
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|
-
<span class="method-click-advice">click to toggle source</span>
|
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</div>
|
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<div class="method-description">
|
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|
603
|
-
<h2 id="method-i-report-label-Generate+a+report+on+the+state+of+this+population.">Generate a report on the state of this population.<span><a href="#method-i-report-label-Generate+a+report+on+the+state+of+this+population.">¶</a> <a href="#documentation">↑</a></span></h2>
|
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<div class="method-source-code" id="report-source">
|
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|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 165</span>
|
610
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report</span>
|
611
|
-
{
|
612
|
-
<span class="ruby-identifier">fitness</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_fitness</span>,
|
613
|
-
<span class="ruby-identifier">fitness_species</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_fitness_species</span>,
|
614
|
-
<span class="ruby-identifier">best_critter</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_best_fit</span>,
|
615
|
-
<span class="ruby-identifier">worst_critter</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_worst_fit</span>,
|
616
|
-
}
|
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|
-
<span class="ruby-keyword">end</span></pre>
|
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</div>
|
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|
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|
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|
-
<div id="method-i-speciate-21" class="method-detail ">
|
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|
-
|
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|
-
<div class="method-heading">
|
631
|
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<span class="method-name">speciate!</span><span
|
632
|
-
class="method-args">()</span>
|
633
|
-
|
634
|
-
<span class="method-click-advice">click to toggle source</span>
|
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-
|
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|
-
</div>
|
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|
-
|
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|
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|
639
|
-
<div class="method-description">
|
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|
-
|
641
|
-
<pre>Group critters into species
|
642
|
-
Note that the @species objects
|
643
|
-
have useful singleton methods:</pre>
|
644
|
-
<ul><li>
|
645
|
-
<p>@species.member? – checks all of the lists for membership, not just the
|
646
|
-
hash</p>
|
647
|
-
</li><li>
|
648
|
-
<p>@<a href="crit">species</a>.fitness – fitness of the entire species</p>
|
649
|
-
</li></ul>
|
650
|
-
|
651
|
-
|
652
|
-
|
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|
-
|
654
|
-
<div class="method-source-code" id="speciate-21-source">
|
655
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 89</span>
|
656
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">speciate!</span>
|
657
|
-
<span class="ruby-comment"># We blow away existing species and create our own member? function</span>
|
658
|
-
<span class="ruby-ivar">@species</span> = {} <span class="ruby-comment"># lists keyed by representative critter</span>
|
659
|
-
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">crit</span>)
|
660
|
-
<span class="ruby-keyword">super</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">crit</span>) <span class="ruby-keyword">or</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">li</span><span class="ruby-operator">|</span> <span class="ruby-identifier">li</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">crit</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">t1</span>, <span class="ruby-identifier">t2</span><span class="ruby-operator">|</span> <span class="ruby-identifier">t1</span> <span class="ruby-keyword">or</span> <span class="ruby-identifier">t2</span> }
|
661
|
-
<span class="ruby-keyword">end</span>
|
662
|
-
|
663
|
-
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">evaluate!</span>
|
664
|
-
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
|
665
|
-
<span class="ruby-identifier">sp</span>.<span class="ruby-identifier">fitness</span> = <span class="ruby-identifier">sp</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">fitness</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>,<span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span><span class="ruby-operator">+</span><span class="ruby-identifier">b</span>} <span class="ruby-operator">/</span> <span class="ruby-identifier">sp</span>.<span class="ruby-identifier">size</span>
|
666
|
-
<span class="ruby-keyword">end</span>
|
667
|
-
<span class="ruby-keyword">end</span>
|
668
|
-
|
669
|
-
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">compactify!</span>(<span class="ruby-identifier">parm</span>)
|
670
|
-
<span class="ruby-identifier">mutt</span> = <span class="ruby-keyword">self</span>[<span class="ruby-value">:mutt</span>] = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span> [<span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span>]}.<span class="ruby-identifier">reject</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span>
|
671
|
-
<span class="ruby-identifier">splist</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">>=</span> <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">smallest_species</span>
|
672
|
-
}.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span>
|
673
|
-
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">delete</span> <span class="ruby-identifier">k</span>
|
674
|
-
<span class="ruby-identifier">splist</span>
|
675
|
-
}.<span class="ruby-identifier">flatten</span>
|
676
|
-
|
677
|
-
<span class="ruby-comment"># FIXME this code is not dry!!!!</span>
|
678
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutt</span>.<span class="ruby-identifier">fitness=</span>(<span class="ruby-identifier">fit</span>)
|
679
|
-
<span class="ruby-ivar">@fitness</span> = <span class="ruby-identifier">fit</span>
|
680
|
-
<span class="ruby-keyword">end</span>
|
681
|
-
|
682
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutt</span>.<span class="ruby-identifier">fitness</span>
|
683
|
-
<span class="ruby-ivar">@fitness</span>
|
684
|
-
<span class="ruby-keyword">end</span>
|
685
|
-
|
686
|
-
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">delete</span> <span class="ruby-value">:mutt</span> <span class="ruby-keyword">if</span> <span class="ruby-keyword">self</span>[<span class="ruby-value">:mutt</span>].<span class="ruby-identifier">empty?</span>
|
687
|
-
<span class="ruby-keyword">end</span>
|
688
|
-
|
689
|
-
<span class="ruby-comment"># Some convience parms</span>
|
690
|
-
<span class="ruby-identifier">parm</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>
|
691
|
-
|
692
|
-
<span class="ruby-comment"># And so now we iterate...</span>
|
693
|
-
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span>
|
694
|
-
<span class="ruby-identifier">wearein</span> = <span class="ruby-keyword">false</span>
|
695
|
-
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">ck</span>, <span class="ruby-identifier">list</span><span class="ruby-operator">|</span>
|
696
|
-
<span class="ruby-identifier">delta</span> = <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">compare</span>(<span class="ruby-identifier">ck</span>)
|
697
|
-
<span class="ruby-comment">#log.debug { "delta for #{crit} and #{ck} is #{delta}" }</span>
|
698
|
-
<span class="ruby-keyword">if</span> <span class="ruby-identifier">delta</span> <span class="ruby-operator"><</span> <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">compatibility_threshold</span>
|
699
|
-
<span class="ruby-identifier">list</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">crit</span>
|
700
|
-
<span class="ruby-identifier">wearein</span> = <span class="ruby-keyword">true</span>
|
701
|
-
<span class="ruby-keyword">break</span>
|
702
|
-
<span class="ruby-keyword">end</span>
|
703
|
-
<span class="ruby-keyword">end</span>
|
704
|
-
|
705
|
-
<span class="ruby-comment"># New species?</span>
|
706
|
-
<span class="ruby-keyword">unless</span> <span class="ruby-identifier">wearein</span>
|
707
|
-
<span class="ruby-ivar">@species</span>[<span class="ruby-identifier">crit</span>] = <span class="ruby-identifier">species</span> = [<span class="ruby-identifier">crit</span>]
|
708
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">species</span>.<span class="ruby-identifier">fitness=</span>(<span class="ruby-identifier">fit</span>)
|
709
|
-
<span class="ruby-ivar">@fitness</span> = <span class="ruby-identifier">fit</span>
|
710
|
-
<span class="ruby-keyword">end</span>
|
711
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">species</span>.<span class="ruby-identifier">fitness</span>
|
712
|
-
<span class="ruby-ivar">@fitness</span>
|
713
|
-
<span class="ruby-keyword">end</span>
|
714
|
-
<span class="ruby-keyword">end</span>
|
715
|
-
<span class="ruby-keyword">end</span>
|
716
|
-
|
717
|
-
<span class="ruby-comment"># Compactify the species if less than smallest_species</span>
|
718
|
-
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">compactify!</span> <span class="ruby-identifier">parm</span>
|
719
|
-
|
720
|
-
<span class="ruby-comment"># And now we evaluate all species for fitness...</span>
|
721
|
-
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">evaluate!</span>
|
722
|
-
|
723
|
-
<span class="ruby-comment"># Dump for debugging reasons</span>
|
724
|
-
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
|
725
|
-
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">">> Species #{k} has #{sp.size} members with a #{sp.fitness} fitness"</span>
|
726
|
-
<span class="ruby-keyword">end</span>
|
727
|
-
|
728
|
-
<span class="ruby-keyword">end</span></pre>
|
729
|
-
</div>
|
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|
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|
731
|
-
</div>
|
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|
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|
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|
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</div>
|
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|
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|
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|
739
|
-
<div id="method-i-worst_critter" class="method-detail ">
|
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|
-
|
741
|
-
<div class="method-heading">
|
742
|
-
<span class="method-name">worst_critter</span><span
|
743
|
-
class="method-args">()</span>
|
744
|
-
|
745
|
-
<span class="method-click-advice">click to toggle source</span>
|
746
|
-
|
747
|
-
</div>
|
748
|
-
|
749
|
-
|
750
|
-
<div class="method-description">
|
751
|
-
|
752
|
-
<p>The “worst critter” is the critter with the highest (away from zero)
|
753
|
-
fitness rating.</p>
|
754
|
-
|
755
|
-
|
756
|
-
|
757
|
-
|
758
|
-
<div class="method-source-code" id="worst_critter-source">
|
759
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 186</span>
|
760
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">worst_critter</span>
|
761
|
-
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.<span class="ruby-identifier">nil?</span>
|
762
|
-
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">max</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.(<span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span>, <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>) }
|
763
|
-
<span class="ruby-keyword">else</span>
|
764
|
-
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">max</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator"><=></span> <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>}
|
765
|
-
<span class="ruby-keyword">end</span>
|
766
|
-
<span class="ruby-keyword">end</span></pre>
|
767
|
-
</div>
|
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|
-
|
769
|
-
</div>
|
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|
-
|
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|
-
|
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|
-
|
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|
-
|
774
|
-
</div>
|
775
|
-
|
776
|
-
|
777
|
-
</section>
|
778
|
-
|
779
|
-
<section id="protected-instance-5Buntitled-5D-method-details" class="method-section">
|
780
|
-
<header>
|
781
|
-
<h3>Protected Instance Methods</h3>
|
782
|
-
</header>
|
783
|
-
|
784
|
-
|
785
|
-
<div id="method-i-report_best_fit" class="method-detail ">
|
786
|
-
|
787
|
-
<div class="method-heading">
|
788
|
-
<span class="method-name">report_best_fit</span><span
|
789
|
-
class="method-args">()</span>
|
790
|
-
|
791
|
-
<span class="method-click-advice">click to toggle source</span>
|
792
|
-
|
793
|
-
</div>
|
794
|
-
|
795
|
-
|
796
|
-
<div class="method-description">
|
797
|
-
|
798
|
-
<p>Find the best fit critter</p>
|
799
|
-
|
800
|
-
|
801
|
-
|
802
|
-
|
803
|
-
<div class="method-source-code" id="report_best_fit-source">
|
804
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 217</span>
|
805
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_best_fit</span>
|
806
|
-
<span class="ruby-identifier">best_critter</span>.<span class="ruby-identifier">phenotype</span>.<span class="ruby-identifier">code</span>
|
807
|
-
<span class="ruby-keyword">end</span></pre>
|
808
|
-
</div>
|
809
|
-
|
810
|
-
</div>
|
811
|
-
|
812
|
-
|
813
|
-
|
814
|
-
|
815
|
-
</div>
|
816
|
-
|
817
|
-
|
818
|
-
<div id="method-i-report_fitness" class="method-detail ">
|
819
|
-
|
820
|
-
<div class="method-heading">
|
821
|
-
<span class="method-name">report_fitness</span><span
|
822
|
-
class="method-args">()</span>
|
823
|
-
|
824
|
-
<span class="method-click-advice">click to toggle source</span>
|
825
|
-
|
826
|
-
</div>
|
827
|
-
|
828
|
-
|
829
|
-
<div class="method-description">
|
830
|
-
|
831
|
-
<p>report on many fitness metrics</p>
|
832
|
-
|
833
|
-
|
834
|
-
|
835
|
-
|
836
|
-
<div class="method-source-code" id="report_fitness-source">
|
837
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 200</span>
|
838
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_fitness</span>
|
839
|
-
{
|
840
|
-
<span class="ruby-identifier">overall</span><span class="ruby-operator">:</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">fitness</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">f</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">f</span>} <span class="ruby-operator">/</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">size</span>,
|
841
|
-
<span class="ruby-identifier">best</span><span class="ruby-operator">:</span> <span class="ruby-identifier">best_critter</span>.<span class="ruby-identifier">fitness</span>,
|
842
|
-
<span class="ruby-identifier">worst</span><span class="ruby-operator">:</span> <span class="ruby-identifier">worst_critter</span>.<span class="ruby-identifier">fitness</span>,
|
843
|
-
}
|
844
|
-
<span class="ruby-keyword">end</span></pre>
|
845
|
-
</div>
|
846
|
-
|
847
|
-
</div>
|
848
|
-
|
849
|
-
|
850
|
-
|
851
|
-
|
852
|
-
</div>
|
853
|
-
|
854
|
-
|
855
|
-
<div id="method-i-report_fitness_species" class="method-detail ">
|
856
|
-
|
857
|
-
<div class="method-heading">
|
858
|
-
<span class="method-name">report_fitness_species</span><span
|
859
|
-
class="method-args">()</span>
|
860
|
-
|
861
|
-
<span class="method-click-advice">click to toggle source</span>
|
862
|
-
|
863
|
-
</div>
|
864
|
-
|
865
|
-
|
866
|
-
<div class="method-description">
|
867
|
-
|
868
|
-
<p>report on the best and worst species</p>
|
869
|
-
|
870
|
-
|
871
|
-
|
872
|
-
|
873
|
-
<div class="method-source-code" id="report_fitness_species-source">
|
874
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 209</span>
|
875
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_fitness_species</span>
|
876
|
-
{
|
877
|
-
<span class="ruby-identifier">best</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
878
|
-
<span class="ruby-identifier">worst</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
879
|
-
}
|
880
|
-
<span class="ruby-keyword">end</span></pre>
|
881
|
-
</div>
|
882
|
-
|
883
|
-
</div>
|
884
|
-
|
885
|
-
|
886
|
-
|
887
|
-
|
888
|
-
</div>
|
889
|
-
|
890
|
-
|
891
|
-
<div id="method-i-report_worst_fit" class="method-detail ">
|
892
|
-
|
893
|
-
<div class="method-heading">
|
894
|
-
<span class="method-name">report_worst_fit</span><span
|
895
|
-
class="method-args">()</span>
|
896
|
-
|
897
|
-
<span class="method-click-advice">click to toggle source</span>
|
898
|
-
|
899
|
-
</div>
|
900
|
-
|
901
|
-
|
902
|
-
<div class="method-description">
|
903
|
-
|
904
|
-
<p>Find the worst fit critter</p>
|
905
|
-
|
906
|
-
|
907
|
-
|
908
|
-
|
909
|
-
<div class="method-source-code" id="report_worst_fit-source">
|
910
|
-
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 222</span>
|
911
|
-
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_worst_fit</span>
|
912
|
-
<span class="ruby-identifier">worst_critter</span>.<span class="ruby-identifier">phenotype</span>.<span class="ruby-identifier">code</span>
|
913
|
-
<span class="ruby-keyword">end</span></pre>
|
914
|
-
</div>
|
915
|
-
|
916
|
-
</div>
|
917
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</section>
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</section>
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</main>
|
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929
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930
|
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<footer id="validator-badges" role="contentinfo">
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931
|
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
|
932
|
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
|
933
|
-
<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
|
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</footer>
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