RubyGems - rubyneat - Versions diffs - 0.3.5.alpha.3 → 0.3.5.alpha.5 - Mend

rubyneat 0.3.5.alpha.3 → 0.3.5.alpha.5

Files changed (252) hide show

checksums.yaml +4 -4
data/.semver +1 -1
data/Gemfile +19 -19
data/Gemfile.lock +39 -33
data/README.md +66 -0
data/Rakefile +19 -2
data/bin/neat +4 -60
data/lib/rubyneat/cli.rb +5 -0
data/lib/rubyneat/cli/generate.rb +131 -0
data/lib/rubyneat/cli/main.rb +54 -0
data/lib/rubyneat/cli/templates/generate/Gemfile.tt +17 -0
data/lib/rubyneat/cli/templates/generate/README.md.tt +1 -0
data/lib/rubyneat/cli/templates/generate/bin/neat.tt +14 -0
data/{neater/xor_neat.rb → lib/rubyneat/cli/templates/generate/neater.tt} +7 -22
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data/doc/NEAT/Critter.html DELETED Viewed

@@ -1,1037 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-<title>
-  Class: NEAT::Critter
-    &mdash; Documentation by YARD 0.8.7.4
-</title>
-  <link rel="stylesheet" href="../css/style.css" type="text/css" charset="utf-8" />
-  <link rel="stylesheet" href="../css/common.css" type="text/css" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  hasFrames = window.top.frames.main ? true : false;
-  relpath = '../';
-  framesUrl = "../frames.html#!NEAT/Critter.html";
-</script>
-  <script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
-  <script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
-  </head>
-  <body>
-    <div id="header">
-      <div id="menu">
-    <a href="../_index.html">Index (C)</a> &raquo;
-    <span class='title'><span class='object_link'><a href="../NEAT.html" title="NEAT (module)">NEAT</a></span></span>
-     &raquo;
-    <span class="title">Critter</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-    <a class="full_list_link" id="class_list_link"
-        href="../class_list.html">
-      Class List
-    </a>
-    <a class="full_list_link" id="method_list_link"
-        href="../method_list.html">
-      Method List
-    </a>
-    <a class="full_list_link" id="file_list_link"
-        href="../file_list.html">
-      File List
-    </a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Class: NEAT::Critter
-</h1>
-<dl class="box">
-    <dt class="r1">Inherits:</dt>
-    <dd class="r1">
-      <span class="inheritName"><span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></span>
-        <ul class="fullTree">
-          <li>Object</li>
-            <li class="next"><span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></li>
-            <li class="next">NEAT::Critter</li>
-        </ul>
-        <a href="#" class="inheritanceTree">show all</a>
-      </dd>
-    <dt class="r2 last">Defined in:</dt>
-    <dd class="r2 last">lib/rubyneat/critter.rb</dd>
-</dl>
-<div class="clear"></div>
-<h2>Overview</h2><div class="docstring">
-  <div class="discussion">
-<h1 id="label-Critters+for+NEAT">Critters for NEAT</h1>
-<p>The Critter class comprises a Genotype and a Phenotype. The Genotype
-comprises Genes and Neurons.</p>
-  </div>
-</div>
-<div class="tags">
-</div><h2>Defined Under Namespace</h2>
-<p class="children">
-      <strong class="classes">Classes:</strong> <span class='object_link'><a href="Critter/Genotype.html" title="NEAT::Critter::Genotype (class)">Genotype</a></span>, <span class='object_link'><a href="Critter/Phenotype.html" title="NEAT::Critter::Phenotype (class)">Phenotype</a></span>
-</p>
-  <h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
-  <ul class="summary">
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#fitness-instance_method" title="#fitness (instance method)">- (Object) <strong>fitness</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Ratings assigned by Evaluator.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#genotype-instance_method" title="#genotype (instance method)">- (Object) <strong>genotype</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Returns the value of attribute genotype.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#novelty-instance_method" title="#novelty (instance method)">- (Object) <strong>novelty</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Ratings assigned by Evaluator.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#phenotype-instance_method" title="#phenotype (instance method)">- (Object) <strong>phenotype</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Returns the value of attribute phenotype.</p>
-</div></span>
-</li>
-      <li class="public ">
-  <span class="summary_signature">
-      <a href="#population-instance_method" title="#population (instance method)">- (Object) <strong>population</strong> </a>
-  </span>
-      <span class="note title readonly">readonly</span>
-    <span class="summary_desc"><div class='inline'>
-<p>Returns the value of attribute population.</p>
-</div></span>
-</li>
-  </ul>
-  <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
-  <p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
-    <h2>
-      Instance Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#compare-instance_method" title="#compare (instance method)">- (Object) <strong>compare</strong>(oc) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Compare ourselves against another critter for compability.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#dump_s-instance_method" title="#dump_s (instance method)">- (Object) <strong>dump_s</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Critter print.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#evaluate%21-instance_method" title="#evaluate! (instance method)">- (Object) <strong>evaluate!</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>A single evaluation step.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#express%21-instance_method" title="#express! (instance method)">- (Object) <strong>express!</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Exoress this critter using the Expressor plugin.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#initialize-instance_method" title="#initialize (instance method)">- (Critter) <strong>initialize</strong>(pop, mating = false, &amp;block) </a>
-  </span>
-    <span class="note title constructor">constructor</span>
-    <span class="summary_desc"><div class='inline'>
-<p>Critter construction.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#initialize_neurons%21-instance_method" title="#initialize_neurons! (instance method)">- (Object) <strong>initialize_neurons!</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>This initializes neurons in preparation for recurrence.</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#ready_for_expression%21-instance_method" title="#ready_for_expression! (instance method)">- (Object) <strong>ready_for_expression!</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'>
-<p>Get the Critter ready for the Expressor to express the geneotype.</p>
-</div></span>
-</li>
-    </ul>
-  <h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
-  <p class="inherited"><span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
-  <div id="constructor_details" class="method_details_list">
-  <h2>Constructor Details</h2>
-    <div class="method_details first">
-  <h3 class="signature first" id="initialize-instance_method">
-    - (<tt><span class='object_link'><a href="" title="NEAT::Critter (class)">Critter</a></span></tt>) <strong>initialize</strong>(pop, mating = false, &amp;block)
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Critter construction. We construct the genotype. The phenotype will be
-constructed by the Expressor operator.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-20
-21
-22
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-25</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 20</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_pop'>pop</span><span class='comma'>,</span> <span class='id identifier rubyid_mating'>mating</span> <span class='op'>=</span> <span class='kw'>false</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
-  <span class='kw'>super</span> <span class='id identifier rubyid_pop'>pop</span><span class='period'>.</span><span class='id identifier rubyid_controller'>controller</span>
-  <span class='ivar'>@population</span> <span class='op'>=</span> <span class='id identifier rubyid_pop'>pop</span>
-  <span class='ivar'>@genotype</span> <span class='op'>=</span> <span class='const'>Genotype</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='comma'>,</span> <span class='id identifier rubyid_mating'>mating</span><span class='rparen'>)</span>
-  <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-</div>
-  <div id="instance_attr_details" class="attr_details">
-    <h2>Instance Attribute Details</h2>
-      <span id="fitness=-instance_method"></span>
-      <div class="method_details first">
-  <h3 class="signature first" id="fitness-instance_method">
-    - (<tt>Object</tt>) <strong>fitness</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Ratings assigned by Evaluator</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-16
-17
-18</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span>
-  <span class='ivar'>@fitness</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="genotype=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="genotype-instance_method">
-    - (<tt>Object</tt>) <strong>genotype</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Returns the value of attribute genotype</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-13
-14
-15</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_genotype'>genotype</span>
-  <span class='ivar'>@genotype</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="novelty=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="novelty-instance_method">
-    - (<tt>Object</tt>) <strong>novelty</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Ratings assigned by Evaluator</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-16
-17
-18</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_novelty'>novelty</span>
-  <span class='ivar'>@novelty</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id="phenotype=-instance_method"></span>
-      <div class="method_details ">
-  <h3 class="signature " id="phenotype-instance_method">
-    - (<tt>Object</tt>) <strong>phenotype</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Returns the value of attribute phenotype</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-13
-14
-15</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_phenotype'>phenotype</span>
-  <span class='ivar'>@phenotype</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <span id=""></span>
-      <div class="method_details ">
-  <h3 class="signature " id="population-instance_method">
-    - (<tt>Object</tt>) <strong>population</strong>  <span class="extras">(readonly)</span>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Returns the value of attribute population</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-12
-13
-14</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 12</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_population'>population</span>
-  <span class='ivar'>@population</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-  <div id="instance_method_details" class="method_details_list">
-    <h2>Instance Method Details</h2>
-      <div class="method_details first">
-  <h3 class="signature first" id="compare-instance_method">
-    - (<tt>Object</tt>) <strong>compare</strong>(oc)
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Compare ourselves against another critter for compability.</p>
-<p>The function to be used here is: distance = c1*E + c2*D + c3*W</p>
-<p>Where: E, D - The number of excess and disjoint genes repesctively. N - The
-number of genes in the largest genome. W - The sum of absolute weight
-differences.</p>
-<p>This is a variation of the formulation suggested by the Stanley paper,
-which normalizes the E and D terms by N.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-333
-334
-335
-336
-337
-338
-339
-340
-341</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 333</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
-  <span class='id identifier rubyid_c1'>c1</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_excess_coefficient'>excess_coefficient</span>
-  <span class='id identifier rubyid_c2'>c2</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_disjoint_coefficient'>disjoint_coefficient</span>
-  <span class='id identifier rubyid_c3'>c3</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_weight_coefficient'>weight_coefficient</span>
-  <span class='id identifier rubyid_e'>e</span> <span class='op'>=</span> <span class='id identifier rubyid_excess'>excess</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
-  <span class='id identifier rubyid_d'>d</span> <span class='op'>=</span> <span class='id identifier rubyid_disjoint'>disjoint</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
-  <span class='id identifier rubyid_w'>w</span> <span class='op'>=</span> <span class='id identifier rubyid_weight_diff'>weight_diff</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
-  <span class='kw'>return</span> <span class='id identifier rubyid_c1'>c1</span> <span class='op'>*</span> <span class='id identifier rubyid_e'>e</span> <span class='op'>+</span> <span class='id identifier rubyid_c2'>c2</span> <span class='op'>*</span> <span class='id identifier rubyid_d'>d</span> <span class='op'>+</span> <span class='id identifier rubyid_c3'>c3</span> <span class='op'>*</span> <span class='id identifier rubyid_w'>w</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="dump_s-instance_method">
-    - (<tt>Object</tt>) <strong>dump_s</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Critter print</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-344
-345
-346</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 344</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_dump_s'>dump_s</span>
-  <span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_dump_s'>dump_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>\n</span><span class='tstring_end'>&quot;</span></span> <span class='op'>+</span> <span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>\n</span><span class='tstring_end'>&quot;</span></span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="evaluate!-instance_method">
-    - (<tt>Object</tt>) <strong>evaluate!</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>A single evaluation step. Evaluate and generate fitness, novelty, etc.
-Returns the result.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-50
-51
-52</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 50</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_evaluate!'>evaluate!</span>
-  <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evaluator'>evaluator</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span> <span class='kw'>self</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="express!-instance_method">
-    - (<tt>Object</tt>) <strong>express!</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Exoress this critter using the Expressor plugin.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-36
-37
-38</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 36</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_express!'>express!</span>
-  <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_expressor'>expressor</span><span class='period'>.</span><span class='id identifier rubyid_express!'>express!</span> <span class='kw'>self</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="initialize_neurons!-instance_method">
-    - (<tt>Object</tt>) <strong>initialize_neurons!</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>This initializes neurons in preparation for recurrence. Note that the
-Critter should already have expressed its genotype before this is called.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-43
-44
-45</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 43</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_initialize_neurons!'>initialize_neurons!</span>
-  <span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_initialize_neurons'>initialize_neurons</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <h3 class="signature " id="ready_for_expression!-instance_method">
-    - (<tt>Object</tt>) <strong>ready_for_expression!</strong>
-</h3><div class="docstring">
-  <div class="discussion">
-<p>Get the Critter ready for the Expressor to express the geneotype.</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-29
-30
-31
-32
-33</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 29</span>
-<span class='kw'>def</span> <span class='id identifier rubyid_ready_for_expression!'>ready_for_expression!</span>
-  <span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_wire!'>wire!</span>
-  <span class='ivar'>@phenotype</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Critter</span><span class='op'>::</span><span class='const'>Phenotype</span><span class='lbracket'>[</span><span class='kw'>self</span><span class='rbracket'>]</span>
-  <span class='ivar'>@phenotype</span>
-<span class='kw'>end</span></pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-</div>
-    <div id="footer">
-  Generated on Sun Apr 13 15:54:02 2014 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.8.7.4 (ruby-2.1.1).
-</div>
-  </body>
-</html>